G689082


Basic Information

Item Value
gene id G689082
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 24977011 ~ 24979552 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU784587
CTTATTACATTGTTTTCCTGGCAACTGCATCAGGTTTGAAGCCCATCCTTTGTATAAACGTGAGGTGAAATAAGAACAAGTCGCCTATCACCTGCTACTCGTTAACAGTGTTTGGGTTTTTATATTCACACACAGAGCATCAGACACCACATCAATACCAAACCTCAGACAATGACCTCATCACTGATGTCATCAATCAATGACCATGTTCTGATCTGAACAGTGAGTTGACACTCAGACTCACTGACAAAATTACAACCTACCACACATACAATAAGCATCAACAGATCACTGCATTAGACAGCCTGATTTAAGAGTTAGACAAAACCATGAGCAAGGGGTTTGGTAAATGAAACACTGGAGGAGGTAATGACTTTCTCAGTGGAGCAGACAGTGAAGTGTTAGACAAGTGATGGTCAATCGCACGTTAGAACACATACTAGACTCAGAAAGACAGCATTAAATATAGCTTCGTCAGAGATGGCTTGTATACAGCAAGTACAGCAAGCTGAGTACTTCAAAAGATGAATTGACTATCCTGTATCATGAGTGTCTAGCAAAAAAACATTGAAAGTTATTGGAGGGTTAAGCATGTTCATGGATCATGTATAATGATATTGTAATCTGAAAATTAAAAAGTAGTTATGTAAGTATGGGTCATAACAGCACAGCAAACCTTTTAGCTCAGTTGTTTTGCATACTATTCTGATAGAAAGAAAATAACCACAACCAAGCTAAACAAAATTGCAGTGTAGTAAAAAGAGGCTGTAATATCTCCCTGTAATATAATGGCCAAGTAGTGAGGAATGAACGAAATAAAGAAGGAAAACAAGCAGAATCCACAGTCTCCCCATAGAGAACGTATCACATTTGTTGATGCACCACAAACATTTAGGTCCACTGGAGGTGCAACAAGTTGATCTACTCAGTTTACTGTTGACATTCTGCAGTTGATTACTGGCCTACTGTGTTCAACCCTTTTTTCCTTTATTGCTTTTTTATAAGAACATTTCAGctttaaaaaaatctaatatcATAGAGTTTTTTTTATagaaaatctttaaaaaaaaaatcatatacAGTTATATTACACATGTGATCCTCTGGCTTCTGTTTTGTTGAACATAAAGGACATTTTGTTACTTTGTTGCACAAAATGTTATAGAATATGCATTTAAACAACAAACATGGGTTCACACAGCGTTGCAAAATAAGGATACACAGACTAAATATACAGAAATCAAATACATGCGTCAATACATTACAGTGCCATGCGTACACAGTCATTTTGGGAAGTCAATGATTTCAATTGGCATTTGTCCCCTTTGTATTAAATGTTCAAACCTTCTTACTATACATACATGACATGGCTTTTACAAAAATGCAGTGACACCAACAGTTGCAGGTTTTGTAGCTAGCCTATACCCATCACTTTGGAGTAACTATGTCTGGTTAAAGTTATGAGATTCTCTCTTGCTATTTAGGCTTTAACGCTTAGGATTAATCATCACCACGGATAAGAGATTTGAGAATGAAATTAGGGATTTACCTTGTCATTATTTTTTTACGTGAGAGATTCATTCATTGCTAACTTTCAGACAAAATGGCCGTCATTAGTCTTTTGTGAGGAGGGTGATTTCTTGCATGAGGGAGAGAACCCTTTTCATCCCATTTATTTTACTAAAGGAGGAGTGTGAAAGCCCATGAGCAGGTAAAGGCATTATCTTGATAACTAGCGATCTACTGTTTCATACAGAAGCAGAAACTGCTTTTCGCTTCTTTACTTCAATATGTTGCTTTCAAGATGGTTAATTgtactgaccattttactcctgCAAGCTTCTCTAACTGTTGGTCCAAACACACATAAAGTTGCTTCAGCTGCCCTCATAGCTTTTATTGCCTTTTTTGAGAGGTACTTTGTCCCTTTCAAGCAGCATATAAAGACAGCAATGCTCTCTCAAGGTCATAACGTTCAATTAAGAATAACCTACGGACAGCCACATCCTTTTACATGAGAGGCATTCTGTTACATGCCACAAACCACCCTAAGGTGACGTATCAGAGGTCAGTGATGACTATCTCCTGCATTCTGACCTTGAGAGTGTCTGCCCTTACAGAGATCTTATCCAGCATCATCAGACTTAGCTTGATAATGCGCTTGGCTTTCCGACGGGGAGAGGGACTCCACTCTGGCCATTCTGGATAGCAGAGAGGCTACTAGAGGAGAATATTGATGTTCTCTGGAGATTTCTAAAGTAGATCAAGCAATGGTCCATGAAAGCCATTGGAATGCTAATATACATCACCAACGGTTGTTTAAACACGCATCATTGTGATGTATGGCATTACTTTGAGGTTTGAACCAATAGGATGTCTTTTACAtcatgatttgatttgacagaatATCCACATGTACCACCAAATCGGCACCCATATTTTTTTCCCCGCTCTAATTATTTGGCACCACAGTCTTTCACACAAACAAAAAGAAACAATGTATCTCTGATTAAATTGTGACCTGTCGTGTCCAACCCACCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU784587 True 2542 lncRNA 0.38 1 24977011 24979552

Neighbor

gene id symbol gene type direction distance location
LOC110529662 LOC106571455 coding downstream 181595 24739057 ~ 24795416 (-)
srp09 srp09 coding downstream 527676 24447416 ~ 24449348 (-)
LOC110529658 LOC106571450 coding downstream 530071 24438965 ~ 24446940 (-)
LOC110529659 LOC106571449 coding downstream 538364 24436497 ~ 24438647 (-)
LOC118965504 NA coding downstream 565177 24404911 ~ 24411834 (-)
LOC110529665 LOC106571552 coding upstream 12983 24992535 ~ 25010299 (-)
cd2ap LOC106571457 coding upstream 81135 25060687 ~ 25134641 (-)
mep1a.2 LOC106571460 coding upstream 296904 25276456 ~ 25288041 (-)
LOC110529672 LOC106571463 coding upstream 310657 25290209 ~ 25294380 (-)
LOC110529673 LOC106571464 coding upstream 316848 25296400 ~ 25304057 (-)
G689073 NA non-coding downstream 16983 24959820 ~ 24960028 (-)
G689070 NA non-coding downstream 20193 24956562 ~ 24956818 (-)
G689069 NA non-coding downstream 21293 24955498 ~ 24955718 (-)
G689056 NA non-coding downstream 48578 24928157 ~ 24928433 (-)
G688605 NA non-coding downstream 244915 24731830 ~ 24732096 (-)
G689083 NA non-coding upstream 7566 24987118 ~ 24987357 (-)
G689089 NA non-coding upstream 23755 25003307 ~ 25003535 (-)
G689092 NA non-coding upstream 28976 25008528 ~ 25008737 (-)
G689096 NA non-coding upstream 36780 25016332 ~ 25016631 (-)
G688922 NA other downstream 239971 24736046 ~ 24737040 (-)
G688537 NA other downstream 295585 24680967 ~ 24681426 (-)
G688480 LOC106571453 other downstream 345962 24629554 ~ 24631049 (-)
G688366 NA other downstream 551458 24425063 ~ 24425553 (-)
G689656 tlr5m other upstream 396570 25376122 ~ 25407347 (-)
G689685 NA other upstream 431271 25410823 ~ 25411132 (-)
G689723 rad51 other upstream 538014 25517566 ~ 25521288 (-)
G689810 LOC106571475 other upstream 684613 25664165 ~ 25664665 (-)

Expression


Co-expression Network