G688613


Basic Information

Item Value
gene id G688613
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 24982729 ~ 24984826 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU784088
ccaaacagcatcagatacatggggtacacatacagtacatgtcctctGCCTCAATTACAATggcagtattagcagcagcacCTGTCTTTTTACTAAAGAAATGACTTAGGACATTTTTTTGTCAAAATTAAATCTTCTTTCTATCTTTTTCTTTTCTCTGCCCCGCTCTGAAAGTGCCtaatttcttcttcttttttacccctttttcatggtatccaattgtttagtagctactatcttgtctcaccgctacaactcccgtacgggctcaggagagacgaaggttgaaagtcatgtgtcctccgatacacaaccaacccaagccgcactgcttcttaagacagcgccatccaacccggaagccagccgcaccaatgtgtcggaggaaacaccgtgcacctggcaacattggttagcgtgcactgcgcccggcccgccacagaagtcgctggtgcgcgatgagacagggatttccctaccggccaaaccctccataccccggacgacgctatgccaatcagcaatctacacacaataccctataatgacagtgaaaacaagtttttagaaatgtttgcaaatgtattaaaaataaaaactatgTATTCAcagcctttgctatgagactcgaaattgagctcaggtgcatcctgtttccagtgatcatccttgagatgtttctaaaacttgattggagtccacctgtggtaaattcaattgattggacatgatttggaaaggcacatatctgtctatataaggtcccacagttgacagtgcatgtcaaagctaagcccaagccatgaggtcaaaataattgtccatagagctccgagacaggattgtgtcgaggcacagatttggggacgGGTACCAAAcatttttttgcagcattgaaggtccccaagaacacagtggcctccatcattcttaaatggaaggagtttagaatcatcaagactcttcctagagctggctgcctggccaaactgagcaatcgggggagaagggtcttggtcagggaggtgacctagaacccgatggtcactctgacagagccctagagttcctctgtggagatgggagaaccttccacaaggacaaccatttctgcagctctccaccaatcaggcctttatggtagcgtgaccagatggaagccactcctcagtaaaagacacatgacagcctgcttagagtttgccaaaaggcacctgaagactcccagaccatgataaacaagattctctggtctgatgaaaccaagattgaactctttggcctgaatgccaagtgtcacatcttgaggaaacctggcaccatacctatggtggtggcagcatcatgctgtggggatgtttttcagcggcagggactgggagactagtcaggattgaggcaaagatgaacggagcaaagtacagagagatccttgatgaaaacctgctccagagtgcttaggacctcaggctggggcgaaggttcaccttccaacaggacaatgaccctaagcacacagccaagacaacgcaggagtggctttgggacaagtctctgaatgtccttgagtggcccagccagagtccagacttgaacccaatcgaacatctctggagagacctgaaaatagctgtgcaacaactctgcccatccaacctgacagagcttgagagtatctgcagagaagaaactcaaatacaggtgtgccaagcttgtagcgtcatacccaagactcaaggctgtaatcactgccaaaggtgcttcaacaaagtagagtaaagggtctgaatacttaagtaaatgtgatatttcagttttattttttttaaattagcaaaacattctaaacttgtttttgctttgtcagtatgatttattgtgtgtagattgatgaggggaatttAAAAaacatctattttagaataaggctgtaacctaacaaaatgtggaaaaagtcaaggggtctgaatactttacaaaagGCACTGTAaagtccaaaagtattgggacagtgacaattgtgttgttgttttggcgcTGTAATCCAGCACTTGAGATTTGAAATGAtgcaatgactatgaggttaaagtgctgtcag

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU784088 True 2098 TUCP 0.45 1 24982729 24984826

Neighbor

gene id symbol gene type direction distance location
LOC110529664 LOC106571456 coding upstream 3285 24942086 ~ 24979444 (+)
LOC110529663 spats1 coding upstream 177263 24797849 ~ 24805466 (+)
LOC110529661 LOC106571453 coding upstream 350479 24626040 ~ 24632250 (+)
lbr LOC106571452 coding upstream 358863 24611307 ~ 24623866 (+)
LOC110529212 enah coding upstream 372166 24503815 ~ 24610563 (+)
tnfrsf21 LOC106571462 coding downstream 155951 25140777 ~ 25184652 (+)
adgrf8 LOC106571458 coding downstream 211980 25196806 ~ 25234163 (+)
LOC110529668 LOC106571459 coding downstream 269353 25254179 ~ 25273650 (+)
trnas-gcu-5 NA coding downstream 321405 25305888 ~ 25306312 (+)
LOC110529679 NA coding downstream 341527 25326353 ~ 25339617 (+)
G688766 NA non-coding upstream 15109 24967416 ~ 24967620 (+)
G688750 NA non-coding upstream 43097 24939191 ~ 24939632 (+)
G688749 NA non-coding upstream 44839 24932858 ~ 24937890 (+)
G688747 NA non-coding upstream 53495 24928588 ~ 24929234 (+)
G688610 NA non-coding downstream 1065 24985891 ~ 24986802 (+)
G688776 NA non-coding downstream 7701 24992527 ~ 24992810 (+)
G688777 NA non-coding downstream 8044 24992870 ~ 24993237 (+)
G688778 NA non-coding downstream 8501 24993327 ~ 24993610 (+)
G688779 NA non-coding downstream 8994 24993820 ~ 24994070 (+)
LOC110529210 ift172 other upstream 991730 23961761 ~ 23991295 (+)
LOC110529640 LOC106571431 other upstream 1458694 23484408 ~ 23524035 (+)
G686448 LOC106571417 other upstream 2009893 22946501 ~ 22972836 (+)
G685551 NA other upstream 2500590 22480323 ~ 22482139 (+)
G685469 NA other upstream 2534656 22446771 ~ 22448073 (+)
G688823 NA other downstream 74127 25058953 ~ 25061450 (+)
LOC110529690 LOC106571476 other downstream 693826 25678604 ~ 25685894 (+)
LOC110529702 LOC106607944 other downstream 1148365 26133191 ~ 26195544 (+)
LOC110529706 LOC106571495 other downstream 1396302 26381097 ~ 26393547 (+)
jag2b LOC106571712 other downstream 2571458 27498161 ~ 27602164 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G60101 NA non-coding CM030127.1 CM030127.1 5165267 ~ 5165488 (-)
tiger barb (Puntius tetrazona) G50729 NA unknown NC_056705.1 CM032074.1 5687790 ~ 5720325 (-)
mexican tetra (Astyanax mexicanus) G55770 NA non-coding NC_035902.1 CM008305.1 31728742 ~ 31730248 (+)