G688821


Basic Information

Item Value
gene id G688821
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25056624 ~ 25057437 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU784310
CTCTAGCTTACCAAGCCATGAAAATGACTCCCCATGAGGGTATAGTGTACCCATCTCTAGTGTTGGATAGAAAAGACTAGATAGATCCAAAATAGTGGACAATATCACATAAAATAACCTGGTACTCATGAGTGTAAATAAAGATTATATTTATTCATTTTGGAAGAATCTCAGTTCATGCAATTTTACAGCACATGTAAACAAGATAACTTGAACAGATGTTAACTTGAACAGATGTTAAATGTGCACATATTTCCTATTTTCTTTGCATCAAATAATTGAATGTACAGTAATAAGCTGAATGACAGTTATATGGATAGCTTTTTCATATATATATTTGCATGATTAACTCTTTGCTCAAGCTCAACTTAGAATGTAGCCATGAGAAACATTGAGGGATGGAAAAGAGAAAGATATTATTGCTTTAGGGATCAATGTGTAACCTTGCCCTTTATTTTACCCGGACCAGTCAACAAGGCCAAACACACTTAAGACAAACCCAAAATCACAGATACATACACAGGCTTTCAGGTTTCCTttcatgcataca
>TU784309
GGAAGAATCTCAGTTCATGCAATTTTACAGCACATGTAAACAAGATAACTTGAACAGATGTTAACTTGAACAGATGTTAAATGTGCACATATTTCCTATTTTCTTTGCATCAAATAATTGAATGTACAGTAATAAGCTGAATGACAGTTATATGGATAGCTTTTTCATATATATATTTGCATGATTAACTCTTTGCTCAAGCTCAACTTAGAATGTAGCCATGAGAAACATTGAGGGATGGAAAAGAGAAAGATATTATTGCTTTAGGGATCAATGTGTAACCTTGCCCTTTATTTTACCCGGACCAGTCAACAAGGCCAAACACACTTAAGACAAACCCAAAATCACAGATACATACACAGGCTTTCAGGTTTCCTttcatgcatacacacaaacacgtgCAAGCACAGTCCCTGATCAGGAATGCTTTCTTTTAAGGAATAAGATTCTAAGCCTGAGGATAGTACACGACTTGGTGTACTCATGTGAAGAAGGAATCATTTCCCATTTTGtgagatcagtgtgtgtgtgtgtgtgtgagagatatatatataatatatatatatagtaccaatCCAAAGGTTTGGACACCACCTACCCATTGAATGGTTTTTCgttacttttactattttcaacattgtagaataatagtg
>TU784311
GGAAGAATCTCAGTTCATGCAATTTTACAGCACATGTAAACAAGATAACTTGAACAGATGTTAACTTGAACAGATGTTAAATGTGCACATATTTCCTATTTTCTTTGCATCAAATAATTGAATGTACAGTAATAAGCTGAATGACAGTTATATGGATAGCTTTTTCATATATATATTTGCATGATTAACTCTTTGCTCAAGCTCAACTTAGAATGTAGCCATGAGAAACATTGAGGGATGGAAAAGAGAAAGATATTATTGCTTTAGGGATCAATGTGTAACCTTGCCCTTTATTTTACCCGGACCAGTCAACAAGGCCAAACACACTTAAGACAAACCCAAAATCACAGATACATACACAGGCTTTCAGGTTTCCTttcatgcatacacacaaacacgtgCAAGCACAGTCCCTGATCAGGAATGCTTTCTTTTAAGGAATAAGATTCTAAGCCTGAGGATAGTACACGACTTGGTGTACTCATGTGAAGAAGGAATCATTTCCCATTTTGt
>TU784312
GGAAGAATCTCAGTTCATGCAATTTTACAGCACATGTAAACAAGATAACTTGAACAGATGTTAACTTGAACAGATGTTAAATGTGCACATATTTCCTATTTTCTTTGCATCAAATAATTGAATGTACAGTAATAAGCTGAATGACAGTTATATGGATAGCTTTTTCATATATATATTTGCATGATTAACTCTTTGCTCAAGCTCAACTTAGAATGTAGCCATGAGAAACATTGAGGGATGGAAAAGAGAAAGATATTATTGCTTTAGGGATCAATGTGTAACCTTGCCCTTTATTTTACCCGGACCAGTCAACAAGGCCAAACACACTTAAGACAAACCCAAAATCACAGATACATACACAGGCTTTCAGGTTTCCTttcatgcatacacacaaacacgtgCAAGCACAGTCCCTGATCAGGAATGCTTTCTTTTAAGGAATAAGATTCTAAGCCTGAGGATAGTACACGACTTGGTGTACTCATGTGAAGAAGGAATCATTTCCCATTTTGtgagatcagtgtgtgtgtgtgtgtgtgagagatatatatataatatatatatatagtaccaatCCAAAGGTTTGGACACCACCTACCCATTGAATGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU784310 False 550 lncRNA 0.34 1 25056624 25057173
TU784309 False 653 lncRNA 0.35 1 25056785 25057437
TU784311 False 513 lncRNA 0.36 1 25056785 25057297
TU784312 True 609 lncRNA 0.36 1 25056785 25057393

Neighbor

gene id symbol gene type direction distance location
LOC110529664 LOC106571456 coding upstream 77180 24942086 ~ 24979444 (+)
LOC110529663 spats1 coding upstream 251158 24797849 ~ 24805466 (+)
LOC110529661 LOC106571453 coding upstream 424374 24626040 ~ 24632250 (+)
lbr LOC106571452 coding upstream 432758 24611307 ~ 24623866 (+)
LOC110529212 enah coding upstream 446061 24503815 ~ 24610563 (+)
tnfrsf21 LOC106571462 coding downstream 83340 25140777 ~ 25184652 (+)
adgrf8 LOC106571458 coding downstream 139369 25196806 ~ 25234163 (+)
LOC110529668 LOC106571459 coding downstream 196742 25254179 ~ 25273650 (+)
trnas-gcu-5 NA coding downstream 248794 25305888 ~ 25306312 (+)
LOC110529679 NA coding downstream 268916 25326353 ~ 25339617 (+)
G688836 NA non-coding upstream 1520 25054791 ~ 25055104 (+)
G688804 NA non-coding upstream 38071 25018339 ~ 25018553 (+)
G688802 NA non-coding upstream 39764 25016556 ~ 25016860 (+)
G688795 NA non-coding upstream 49858 25006555 ~ 25006766 (+)
G688793 NA non-coding upstream 51395 25004954 ~ 25005229 (+)
G688822 NA non-coding downstream 110 25057547 ~ 25058925 (+)
G689201 NA non-coding downstream 128589 25186026 ~ 25186267 (+)
G689211 NA non-coding downstream 170852 25228289 ~ 25228626 (+)
G688613 NA other upstream 71798 24982729 ~ 24984826 (+)
LOC110529210 ift172 other upstream 1065625 23961761 ~ 23991295 (+)
LOC110529640 LOC106571431 other upstream 1532589 23484408 ~ 23524035 (+)
G686448 LOC106571417 other upstream 2083788 22946501 ~ 22972836 (+)
G685551 NA other upstream 2574485 22480323 ~ 22482139 (+)
G688823 NA other downstream 1516 25058953 ~ 25061450 (+)
LOC110529690 LOC106571476 other downstream 621215 25678604 ~ 25685894 (+)
LOC110529702 LOC106607944 other downstream 1075754 26133191 ~ 26195544 (+)
LOC110529706 LOC106571495 other downstream 1323691 26381097 ~ 26393547 (+)
jag2b LOC106571712 other downstream 2498847 27498161 ~ 27602164 (+)

Expression


Co-expression Network