G688822


Basic Information

Item Value
gene id G688822
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25057547 ~ 25058925 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU784314
ttgccttgacagctctgcacactcttggcattctctcaaccagcttcatgaggtagtcacctggaatgcatttcaattaacaggcatGCCCTgtgaaaagttaatttgtggaatttctttccttcttaatgcgtttgagccaatcagttgtgttgtgacaaggtatgggtggtaaaccgaagatagccctatttggtaaaagaccaagtccatattatggcaagaacagctcaaataaggaaagagaaatggaagtccatcattactttaacacatgaaggtcagtcaatacagaacatttcaagaactttgaaaaatgtgcagtctcaaaaaccatcaagcgctatgatgaaactggctctcatgaggaccaccacaggaaaggaagacccagagttacctctgctgcaaaggatggGTTCatgagagttaccagcctcagaaattgcagcccaaataaatgcatcacatAGTTCaagaacagacacatttcaacatcaactgtgcaGAAGAGACCGAGTGAATCAGGCatccatggtcgaattgctgctgaaaccactactaaaggacaccaataaggacactaataagaagaagagacttgcttgggccaagaaacacgagcaatggacattagaccagtagaaatctgtcctttggtctgatgagtccaaattagagatttttggttccaaccgccatgtctttgtgagacgcagagtaggtgaacagatgatctctgcatgtgtggttcctaccgtgaagcatggaggtggtggtgtgatggtgcttggTGACacagtctgatttatttagaattcaaggcacacttaaccagaatggctaccacagcattctgcagtgatacgccatcccatctggtttgagcttaggggcctatcatttgtttttcaacaggacaatgccccagtgctgcatcagatgagctggcctccacaatcccccaacctcaacccaattgagattgattgggatgagttggactgcagagtgaaggaaaagcagccaacacgtgctcagcatatgtgggaactccttcaagactgttggaaaagcattccaggtgaagctggttgagagaatggcaagagtgtgcaaagctgtcatcaaggcaaaaggtggct
>TU784315
ttgccttgacagctctgcacactcttggcattctctcaaccagcttcatgaggtagtcacctggaatgcatttcaattaacaggcatGCCCTgtgaaaagttaatttgtggaatttctttccttcttaatgcgtttgagccaatcagttgtgttgtgacaaggtatgggtggtaaaccgaagatagccctatttggtaaaagaccaagtccatattatggcaagaacagctcaaataaggaaagagaaatggaagtccatcattactttaacacatgaaggtcagtcaatacagaacatttcaagaactttgaaaaatgtgcagtctcaaaaaccatcaagcgctatgatgaaactggctctcatgaggaccaccacaggaaaggaagacccagagttacctctgctgcaaaggatggGTTCatgagagttaccagcctcagaaattgcagcccaaataaatgcatcacatAGTTCaagaacagacacatttcaacatcaactgtgcaGAAGAGACCGAGTGAATCAGGCatccatggtcgaattgctgctgaaaccactactaaaggacaccaataaggacactaataagaagaagagacttgcttgggccaagaaacacgagcaatggacattagaccagtagaaatctgtcctttggtctgatgagtccaaattagagatttttggttccaaccgccatgtctttgtgagacgcagagtaggtgaacagatgatctctgcatgtgtggttcctaccgtgaagcatggaggtggtggtgtgatggtgcttggTGACacagtctgatttatttagaattcaaggcacacttaaccagaatggctaccacagcattctgcagtgatacgccatcccatctggtttgagcttaggggcctatcatttgtttttcaacaggacaatgccccagtgctgcatcagatgagctggcctccacaatcccccaacctcaacccaattgagattgattgggatgagttggactgcagagtgaaggaaaagcagccaacacgtgctcagcatatgtgggaactccttcaagactgttggaaaagcattccaggtgaagctggttgagagaatggcaagagtgtgcaaagctgtcatcaaggcaaaaggtggctactttgaagaatctcaaatataaaatatatttagatttgtttaacacttttttggttactacatgattccatgtgttatttcatagttttgatgtattcactattattctacaatgtagaaaatttaaaaataaagaaaaacccttgaatgactcagtgtgtccaaacttttgactggtacacacacatgtatgtatatgtatatatatatatatatatatatatacacatata

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU784314 False 1145 lncRNA 0.45 1 25057547 25058691
TU784315 True 1379 lncRNA 0.41 1 25057547 25058925

Neighbor

gene id symbol gene type direction distance location
LOC110529664 LOC106571456 coding upstream 78103 24942086 ~ 24979444 (+)
LOC110529663 spats1 coding upstream 252081 24797849 ~ 24805466 (+)
LOC110529661 LOC106571453 coding upstream 425297 24626040 ~ 24632250 (+)
lbr LOC106571452 coding upstream 433681 24611307 ~ 24623866 (+)
LOC110529212 enah coding upstream 446984 24503815 ~ 24610563 (+)
tnfrsf21 LOC106571462 coding downstream 81852 25140777 ~ 25184652 (+)
adgrf8 LOC106571458 coding downstream 137881 25196806 ~ 25234163 (+)
LOC110529668 LOC106571459 coding downstream 195254 25254179 ~ 25273650 (+)
trnas-gcu-5 NA coding downstream 247306 25305888 ~ 25306312 (+)
LOC110529679 NA coding downstream 267428 25326353 ~ 25339617 (+)
G688821 NA non-coding upstream 110 25056624 ~ 25057437 (+)
G688836 NA non-coding upstream 2443 25054791 ~ 25055104 (+)
G688804 NA non-coding upstream 38994 25018339 ~ 25018553 (+)
G688802 NA non-coding upstream 40687 25016556 ~ 25016860 (+)
G688795 NA non-coding upstream 50781 25006555 ~ 25006766 (+)
G689201 NA non-coding downstream 127101 25186026 ~ 25186267 (+)
G689211 NA non-coding downstream 169364 25228289 ~ 25228626 (+)
G689226 NA non-coding downstream 216172 25275097 ~ 25275777 (+)
G688613 NA other upstream 72721 24982729 ~ 24984826 (+)
LOC110529210 ift172 other upstream 1066548 23961761 ~ 23991295 (+)
LOC110529640 LOC106571431 other upstream 1533512 23484408 ~ 23524035 (+)
G686448 LOC106571417 other upstream 2084711 22946501 ~ 22972836 (+)
G685551 NA other upstream 2575408 22480323 ~ 22482139 (+)
G688823 NA other downstream 28 25058953 ~ 25061450 (+)
LOC110529690 LOC106571476 other downstream 619727 25678604 ~ 25685894 (+)
LOC110529702 LOC106607944 other downstream 1074266 26133191 ~ 26195544 (+)
LOC110529706 LOC106571495 other downstream 1322203 26381097 ~ 26393547 (+)
jag2b LOC106571712 other downstream 2497359 27498161 ~ 27602164 (+)

Expression


Co-expression Network