G689606


Basic Information

Item Value
gene id G689606
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25233139 ~ 25236243 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU785178
ctgttgtattcggggcacgTGACACATACACTTTCATTTATTTTGATCAGTGTGGTGCCAAGTCATTGGGAAAGCAGAAATCGCACCGTGAATATGGCAAACACGGCATCTTTATTGGGTAGATGGTTGAACCAAGACTTTTTTAATCGAGTTGCAGCAACACCGTCTGTGAGACAGGATCAACGAGACAAAACTACTGTAGAAGCATCTTCAACAATATATTATACACATTTAAAATATGCCCATTACATAAGAAAAGTCAATAGCAGCTGTATAACATGTCTTAATACAACGCACAGAAATtaagtaaaaatgtatttaaaaaaaggcGAACTCTCTGTCATACAGTTAGCACTTGTCTGTACCAATGCAGCTAATTGACCTTCATAAGTTCCTGCAATTGTCTGGTCATCTATTATATTTGAATATTGCTACGGTTTCTTTGGAAATCTGAATCGCAAAAAAGAAAAAGTACTTCAATACCATACATAATTTAAAGTGCTATGTCTTGTTCAGAAGCTGGTTCAAGCTGGTCCATCATTTACTGTAGCGTCTAGACTCATAAACGTGTACAACAAAAAAGAGGCAAGTCTCTCAGACAGAACccttatacagtggcttgcgaaagtattcacccagggcattttcctattttgttgccttacaacctggaattaaaatagatttttggggggtttgtgtcATCTGATTTtctcaacatgcctaccactttgaatatgttttattgtgaaactaacaagaaataagacacacaaaaaaagaaaacttgagcgtgcataactactCATCCCCCCaaggtcaatactttgtagagccacctttttcagcaattacagctgcaagtctcttggggtatgtctctataagcttggcacatctaaccactgggatttttgcccattcttcaaggcaaaacttctccagctccttcaagttggttgggttccgctggtgtacagcgaTCTTTAAGTCatgccacagattctcaattggattgaggtctgggctttgactaggccagactagacatttaaatgtttccccttaaaccactcaagtgttgctttagcagtatgcttagggtcattgccctgctggaaggtgaacctccgtcccagtctcaaatctctggaagactgaaacaggtttccctcaagaatttccctgtatttagcgccacccatcattcctttaattctgaccagtttcctagtccctgttgatgaaaaacatccccacagcatgatgctgccacccccatgcttcactgtgtggATGATGTTCTcgggatgatgagaggtgttgggtttgcgccagacatagcattttccttgatggccaaaaagcaaacTTTTAgactcatctgaccagagtaccttgttccatatgtttggggagtctcccacatgccttttggcgaacacccaACGTGTTTGCTTATAttgttctttaagcaatggctttttatggccactcttccgtaaagcccagctctgtggagtgtacggcttgaagtggtcctatggacagatactccaatctccgctgtggagctttgcagctccttcagggttatctttggtctctttgttgcctctctgattaatgccctccttgcctggtctgtgagttttgatgggaggccctctcttggcaggtttgtatgctgttctttgtatgccattttaatatttgataattaaccaattatattaggccactcttggccatgattacagacacctgtgtcttttgacactatataaacgagtcatcccgcagtgtttgtgattataccctgatgaagacagcttggctgtcgaaacgttggtaattaaatttttgcatctgagctcctagagtgtgcggctctcttttatttttaagttttctactccgctaacCAGCACcttgcctaaataggtgtgcgtttctttttcttctagataggtttgttatggtgccatattctttaaattttttaataatggatttaatggtgctctgtgggatgttcaaatgTTCTGATATTTTGTATAACCCAACCATGatttgtacttctccacaactttgtccctgacctgtttggagagctccttggtcttcatggttccgcttgcttggtggtgccccttgcttagtggtgttgcagactttgggaccattcagaacaggtgtatatatactgaggtcatgtgacagatcatgtgacacttagattgcacacaggtggacttcatttaacaaattatgtgagttatgaaggtaattggttgcacaagATCTTATTTGGGGACTTcacagcaaagggggtgaatacatatgcacacaccacttttccgtgTTAtaatatttttaatttttttaaacaagttattttttaaatttcatttcaccaattttGATTATTTTGTATGTCCAttgcatgaaatccaaataaaaatctatttaaattacaggttttaatgcaacaaaataggaaatgaGGATGAAtcattttgcaaggcactgtagaactCACAACATTATTCCAGAAAAGTCCACAAATCTTCACATCAATAGATTCATTGTGTGTTGGACCAAGCCATGTTTTATGGCAGGTCCAGGTCAAAGGCTATAATTCTTGGCtaaacatacattttaaaaacaataaaatggtgccatctgctttgcttaaaagaaagaattttaaattatttatacttttacttttgatacttacgtatatttttatcaattacatttacttttgatacttaagtatatttaaaaacaaatcaaTTTACTCAAGTAGTTTTTCACTGAGTGACTTTTACCTGAGTAACTTCATagtaaggtatctatactttaactcaagtatgacCATTGGGTACTTTTAGGTGTTGATGAAAGACTCTGTAGCACCAGTGCTGTTGGAAGAATTTGCAACTTCCGAAACATTGTAGACATCTGTCAAAGCAAGAGAAGTCAAACAGTTGGTTTGTTATAGAAAGCAAGGCAGGGTGATTATTTAAGAAACCAAATATTTAAAGAACTGTGATCATttcaaaat

Function

NR:

description
transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU785178 True 3073 lncRNA 0.39 2 25233139 25236243

Neighbor

gene id symbol gene type direction distance location
cd2ap LOC106571457 coding downstream 98498 25060687 ~ 25134641 (-)
LOC110529665 LOC106571552 coding downstream 222840 24992535 ~ 25010299 (-)
LOC110529662 LOC106571455 coding downstream 437723 24739057 ~ 24795416 (-)
srp09 srp09 coding downstream 783804 24447416 ~ 24449348 (-)
LOC110529658 LOC106571450 coding downstream 786199 24438965 ~ 24446940 (-)
mep1a.2 LOC106571460 coding upstream 40213 25276456 ~ 25288041 (-)
LOC110529672 LOC106571463 coding upstream 53966 25290209 ~ 25294380 (-)
LOC110529673 LOC106571464 coding upstream 60157 25296400 ~ 25304057 (-)
LOC118965601 NA coding upstream 68176 25304419 ~ 25305913 (-)
LOC110529678 LOC106571467 coding upstream 71188 25307431 ~ 25309783 (-)
G689593 LOC106571458 non-coding downstream 11839 25217015 ~ 25221300 (-)
G689079 NA non-coding downstream 174453 25057588 ~ 25058686 (-)
G689080 NA non-coding downstream 175757 25056785 ~ 25057382 (-)
G689096 NA non-coding downstream 216508 25016332 ~ 25016631 (-)
G689092 NA non-coding downstream 224402 25008528 ~ 25008737 (-)
G689620 NA non-coding upstream 16509 25252752 ~ 25317597 (-)
G689644 NA non-coding upstream 69396 25305639 ~ 25306422 (-)
G689659 NA non-coding upstream 108635 25344878 ~ 25345222 (-)
G689677 NA non-coding upstream 163032 25399275 ~ 25399585 (-)
G689680 NA non-coding upstream 171554 25407797 ~ 25408072 (-)
G688922 NA other downstream 496099 24736046 ~ 24737040 (-)
G688537 NA other downstream 551713 24680967 ~ 24681426 (-)
G688480 LOC106571453 other downstream 602090 24629554 ~ 24631049 (-)
G689656 tlr5m other upstream 139879 25376122 ~ 25407347 (-)
G689685 NA other upstream 174580 25410823 ~ 25411132 (-)
G689723 rad51 other upstream 281323 25517566 ~ 25521288 (-)
G689810 LOC106571475 other upstream 427922 25664165 ~ 25664665 (-)
LOC110529694 LOC106571481 other upstream 565721 25801320 ~ 25805570 (-)

Expression


Co-expression Network