G689656 (tlr5m)


Basic Information

Item Value
gene id G689656
gene name tlr5m
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25376122 ~ 25407347 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU785239
TAGAGAAGTTGGAATGTTTTATTAAAAGTACCAAAATCCTTACATTAGTTATATTACAACGTGTAAATGTAAGCCACGAGAACTTTGCATTGTACACACTGCAAAACACAATCatagatggcgccgacagacatggcagctctgcttctagcgcCAAAGCAATTTCGCAGTATTTTGatttttgttatttgttatttctttcattaaaaaaaaaacttccaaaaatagaagcatttcgctacaccggcaataacatctgctaaatatgtgtatgtgaccaataaaatttgatttgatttatacagAAGGTAACGTTTCACAGTTCCAATATTAGTGAATAAAGGTTGACTGCCACCTAGTGGTCAAAAACAAGCTATGCCAAAAGACAGAGGACCCTCTCCATTTTGCCTGTAATCAATATGGGAAAAGTTCTTAATGCTATACAGACAAAATAAAAATGACTGATGTAAGAATTCACAGTACAGTTAAATAAGATTTTCGCTTAAGCATACAGGCTGTGGAAaaatgagtcaacaacattaagTTCCAACTGTCATATTTACAAGTGTGATATCCCTATTGTTATCTTTGGAGGTGTACTTTTTGTCCTTAAGAATCTTGGACATGAGCTTCTCATAGAACCATTGAATATCCTGTGTGTCCTCCGGCCACTGCAGGTACTCCCTCTTCTGGGCAAAGGTCCTAATGCCTTCATGTTTCATCAGTCTGTAATGGGGGACATTCCCCACGACCACCATGATGAGAACATCTCTGAGCTCCTCCAGCATCCTGCTCTGAGCCAGGGTAAAGGCCTCCAGGCACCAGCCGTCCTTGAGGAACTCTTTAGAGACGATACAAACGGTCTTCCTGCTCCCCCATATGGCGTCCCTGATATTGAACAGGTGATCTTCACCTGGGATGAAGTCTCTGACCTCGAAGCAGCAGCGGAGGACGTTTCGCTCCGCGAACTGAGAGTCTAGTCTGTTCAACAGGGCGGTTTCTACCCACTTGTAGTCGTTGTTGCTGAAGCATAAGTAAGCGTCGTACCGAGGCCCATCAGCAGAAGGATCCCTCCTAGGGCCCTCAAGGATCCTGGCAGTCAACTTTTTATAAACTTTGAAGAGGAATCCACGGAGACGAGCGAAAACGATTGATCCGACCATGATCAGGATGATGAGCGCTGTGCAGCCGATGAAGAGCGAGAGCCTCAGCTCCTGAACCAGCCTCTCGTCATCCTCCTCACACGATATGACTGAGCTGAAATTCAACAGGCTGATGCCATGGAGATCTGAAGGAAACTCACAGCTGAATTCATTCACGCCAGGGTCAGGAAAAGTCACGTTAGTCCCTTTCAGCCACGTCAGAAAGTCCTCCAGACCGCAGTCACAGTGGAATTGATTCCTATACAGGTTGATCCAGCTGAGAGAATGGAAAGCTTCTGGGTCAGGAGAGGCCAGGAAATTGTAAGAGAGATCAACCGTTTTGAGAGAATGGAAAGCTTCTGGGTCAGGAGAGGCCAGGAAATTGTAAGAGAGGTCAACTGTTTTGAGACTCTGGACAAATGTCTGGTTTGAGGTATATGAGTGAGTTGAAGTGAAGATCCATCTCTTCCATAGAGATGAGGCCTTTAAATATACCATCTGGGAGAGCCTGCAGGGAGTTAAAGCTTAAAGCCAGGCTTAAAAGCTTGCCAAGATTTTCAAATACATGCATACACTCTCCCCGTTTCACTCAACTTTGAacataaatccaatgacatggtgccATTTGtcgttgatttcacattgaattcacattagttgacaactcaaccaaatgtaaatcaaaaataGACATCGaaatgatgtctgtgcccagtgggatgagaGCATTGGCATAACTCTTATCATATGAGTAAAAAGGGGTATCCTGACACTTTTTAGGTAAACAGCTGAGTGATCGGGTTCGAGAAATGTAACCATTGATGGaacaaggactgaccatctgaGAGTTTTGAAGCTCTACAGTTTTACTTTACAATTACAGTGTTTGCAAACAATTGAGTTAGACAAGCTGACATGTTGGGTTATGATGGGGTTAGTTAGACATAAGCTCGTGAGGCATGTATTCATTCTATTTTTTCAAGAATCAGAAAATTGATGTAGGCCTACCAATCCCAGATTCCCCCTTTAAATGTACTTCTCTAGAGGCTGCAATTCTGAGACATTTTATAAAGTTGCCATCCAAAGAACTGTGACGTGTTAATTGACTCCAAGATGACAGCAATTGTTCATGTCTGGTGCTTCAATGCGTATTGGTGTCTTTGCATTGTAACCCCTCCAAAACaatagtctgggtaccaCTGAACTGAGACGGCAACCAGGCTaccattttttcttcttctgataTATCAACTATTGGCCGACAAAATAATGCAATTATTATAGTAGGCCTAAACAGTAGATTAAATGTAAAAGTTGTGTTACCTGAAGTCATGCGCGCGCTGATAACCCAAATATGCGTCGAGCTGGTGAGTACATTTATGGGATAGGTTACACCCCTCTCAGATAAATCAAGCACTGAGCGGTCCCTTTAGCATGGCCCGGTGCCCCGTGTAAGGTGAAGATTTTATTTTACGACTAATGGAACGAATCCCCCTACTGTTTTTCATAAATTCCTCCCCAGAAACGGGGAGGATCTAACTGCAGACATCATCTCTCAGGCCCCCCGCTATACTGCCACCTACTGGTGGGAATAGTTTATAGACATCATCTCTTAGGCCCTTAAGTTTTCAGGCCCCTCTCCAAtgccaggggcctcatttataaacgtTGTTTATGCACAAAATCTGCCC

Function

NR:

description
membrane-Toll-like receptor 5 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU785239 True 2833 TUCP 0.43 4 25376122 25407347

Neighbor

gene id symbol gene type direction distance location
LOC110529676 LOC106571466 coding downstream 49824 25323627 ~ 25326298 (-)
LOC110529677 brox coding downstream 55310 25310439 ~ 25320812 (-)
LOC110529678 LOC106571467 coding downstream 66339 25307431 ~ 25309783 (-)
LOC118965601 NA coding downstream 70209 25304419 ~ 25305913 (-)
LOC110529673 LOC106571464 coding downstream 72065 25296400 ~ 25304057 (-)
LOC110529680 disp1 coding upstream 8930 25416277 ~ 25490274 (-)
LOC110529682 LOC106571470 coding upstream 90226 25497573 ~ 25503435 (-)
LOC110529692 LOC106607895 coding upstream 336677 25744024 ~ 25758350 (-)
LOC110529693 LOC106571480 coding upstream 351530 25758877 ~ 25775028 (-)
LOC110529218 NA coding upstream 389553 25796900 ~ 25800394 (-)
G689659 NA non-coding downstream 30900 25344878 ~ 25345222 (-)
G689620 NA non-coding downstream 58525 25252752 ~ 25317597 (-)
G689644 NA non-coding downstream 69700 25305639 ~ 25306422 (-)
G689606 NA non-coding downstream 139879 25233139 ~ 25236243 (-)
G689593 LOC106571458 non-coding downstream 154822 25217015 ~ 25221300 (-)
G689680 NA non-coding upstream 450 25407797 ~ 25408072 (-)
G689681 NA non-coding upstream 1325 25408672 ~ 25408969 (-)
G689683 NA non-coding upstream 2382 25409729 ~ 25409976 (-)
G689684 NA non-coding upstream 2642 25409989 ~ 25410308 (-)
G689687 NA non-coding upstream 4731 25412078 ~ 25412457 (-)
LOC110529665 LOC106571552 other downstream 378287 24992535 ~ 25010299 (-)
G688922 NA other downstream 639082 24736046 ~ 24737040 (-)
G688537 NA other downstream 694696 24680967 ~ 24681426 (-)
G688480 LOC106571453 other downstream 745073 24629554 ~ 24631049 (-)
LOC110529658 LOC106571450 other downstream 935922 24438965 ~ 24446940 (-)
G689685 NA other upstream 3476 25410823 ~ 25411132 (-)
G689723 rad51 other upstream 110219 25517566 ~ 25521288 (-)
G689810 LOC106571475 other upstream 256818 25664165 ~ 25664665 (-)
LOC110529694 LOC106571481 other upstream 394617 25801320 ~ 25805570 (-)
G690033 NA other upstream 557832 25965179 ~ 25965493 (-)

Expression


Co-expression Network