G689353


Basic Information

Item Value
gene id G689353
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25467429 ~ 25467682 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU784896
ggggagcgctactgcacagctattttcaggtctcagagctctacggataattcctttgaccacatggcttggtttttgctctgacatgcactgtcaactgtgggactttatataaacaggtgtgtgcctttacaaatcatgtccaatcaattgaaattaccacaagtggactccaatcaagttgtggaaacatcaagaatgatcaatggaaacaggatgcacctgatctcaatttcgagtctaatagagaaggg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU784896 True 254 lncRNA 0.43 1 25467429 25467682

Neighbor

gene id symbol gene type direction distance location
tlr5m tlr5m coding upstream 60079 25399256 ~ 25407350 (+)
LOC110529215 tlr5 coding upstream 89015 25370910 ~ 25378414 (+)
LOC110529679 NA coding upstream 127812 25326353 ~ 25339617 (+)
trnas-gcu-5 NA coding upstream 161117 25305888 ~ 25306312 (+)
LOC110529668 LOC106571459 coding upstream 193779 25254179 ~ 25273650 (+)
knl1 knl1 coding downstream 37331 25484214 ~ 25515202 (+)
LOC110529684 rad51 coding downstream 49805 25517487 ~ 25521324 (+)
LOC110529685 LOC106571472 coding downstream 59531 25527213 ~ 25531103 (+)
LOC110529217 LOC106571473 coding downstream 84755 25552437 ~ 25587302 (+)
LOC110529686 pura1 coding downstream 119761 25587443 ~ 25600542 (+)
G689311 NA non-coding upstream 52922 25414192 ~ 25414507 (+)
G689309 NA non-coding upstream 54018 25412001 ~ 25413411 (+)
G689294 tlr5m non-coding upstream 60331 25377933 ~ 25407098 (+)
G689276 NA non-coding upstream 131204 25332891 ~ 25336225 (+)
G689374 NA non-coding downstream 29915 25497597 ~ 25498338 (+)
G689393 NA non-coding downstream 67197 25534879 ~ 25535162 (+)
G689395 NA non-coding downstream 71662 25539344 ~ 25539646 (+)
G689396 NA non-coding downstream 73117 25540799 ~ 25541075 (+)
G688823 NA other upstream 405979 25058953 ~ 25061450 (+)
G688613 NA other upstream 482603 24982729 ~ 24984826 (+)
LOC110529210 ift172 other upstream 1476430 23961761 ~ 23991295 (+)
LOC110529640 LOC106571431 other upstream 1943394 23484408 ~ 23524035 (+)
G686448 LOC106571417 other upstream 2494593 22946501 ~ 22972836 (+)
LOC110529690 LOC106571476 other downstream 210970 25678604 ~ 25685894 (+)
LOC110529702 LOC106607944 other downstream 665509 26133191 ~ 26195544 (+)
LOC110529706 LOC106571495 other downstream 913446 26381097 ~ 26393547 (+)
jag2b LOC106571712 other downstream 2088602 27498161 ~ 27602164 (+)
G692343 LOC106571710 other downstream 2428019 27895701 ~ 27895987 (+)

Expression


Co-expression Network