G689723 (rad51)


Basic Information

Item Value
gene id G689723
gene name rad51
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25517566 ~ 25521288 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU785308
CAGAAACTATGGTTCTTGAACGTACAAACAAATAGAGAAAATGTAGTCGCTAAGGGTGTCAAACCTTGTTAGTAAGGGGGCATGTACTGATGTTTATTCTATTAAGGGCAGATGTTTGACAAATAAATAGATTTAAATGAAAAACACTGGTAGAAATATCAGACACCCGCGAAAAACAAAATCAAACAAAACAATACCACAAACATACATCTAAATATGTCCACGTCTACCAGTGGAGTTAGATTTGAAATATTATTTCACAAGTCCATTGGGTTGGTGAAAAATGTCACATTTCTGTGAAGTTGAGCTCCCTCTGATTCTCAAAGCTGCTATAGGcccatatactgtataatacaaaATGAGTATCCAGTGTAAGCCTAAGCATGGGCAAATCACTGTGCTCCTTAGGGCAATAGGCAACATTCTCTATGCACAGTACCCTCTTGTACTGTAGGAATGCATTCTTCCCTCAGCAATGggacagtccaaaatcatatcaACACAACAGTTATGGCCAGCATCTCCCTATTAGTCATTTTCTTAGCTCTTACCTCTGGGAAgtgtgtacacacaaacacaagagcTGTCATTGTGCAAGTCTATGGTAGCGAGTGAGGGGCATAGCCACATGACATACAGCCATGCTCTCACTCCCTGGTATGGTGCCATCTGAGCTCAGTCCTTGGCGTCACCCACCCCATCTGCGTTGATGGCAAACATGGCTTCAGACTCAGGGAGGCAGGGCGAGTCGTAAATTTTGCAGATCCTCGTTTCGCCGCGGCCTTTCCTCAAGTACAGTCGGGTAGTGGAGGCATGTGCCATGATGTTGCCCCCGATAGGTTTTTTAGGGTCTGCTGAGAACATGGCGGCACCGTCTACCTGGGCCACCACCTGATTGGTTATCACCACAGCAACGCCAAACTCGTCTGCTAGCCTTAGCAGCATTCTCAGGAAGCGTCCCAGGTGGCCTTGCCGTGCAGCGAGCTCTCCCCTCCCGGAGTAGTCGGTTCTGTAGAGGGCTGTGGCACTGTCCACTATCAGCAGGGCATACCTGGACTCTGCCATCATGGCTGAGGCTTGGTAAAGAAGCTGGGTCTGGTGGTCTGTGTTAAAGGCCCTAGCGTAGGCTACGTTGTCCAGAACGTCACTCCCAACAAGTCCATACCGCTCTGCTACAGCCAGTAACCTCTCTGGTCTGAAGGTCCCCTCTGTATCAATGTACATGGCTTTTCCCTCTCCACCACCCTGGTCAATGGGCAACTGGCAGGTGACTGCAAGGGTGTGGCACAGCTGTGTTTTTCCTGTCCGGAACTCTCCAAACATTTCTGTGATGGAGCCTGTCTCTATcccacCCTGTAGCAGCTTGTCCAGCTCTTTGGACCCAGTGGAGATCTGGATGATTTCAGCTCGGCGTTGGTGGAACTCTGTTGCTGTGGTGAAGCCCATGGGCACTAGTTTGGCAGCTTCAGCCAGAACTTTGTCTGCTTTGGCCTCACTGATCCCCTTGATGTTAAGCAGCTCCTTCTTGGGGGCATAGGCCACTGCCTCAATGGTGTGGAAGCCTGCATCCTCCAGCTTCTTTATGTCACTGGCACTGATGCCACATTGCTCAAGTCTGCTCAGTAGCTGTGGTCCaaagctctcctcctcctctacctctgccTCCACTCTGGCCTCGCTCCTCACAGCCATCTTGATTTATGGACAGGTGAGGTATGTCTTTCAAATGGGAGAACGTTTTGACGGTGCAAGAGTTATAACTCTATAGCTCTAGTTTTTATTGCTTGAACTAAAATCTCCCGCTCGCTAGTCAACGTACTTGTTTATCAGGCTACGTAATTA
>TU785310
CAGAAACTATGGTTCTTGAACGTACAAACAAATAGAGAAAATGTAGTCGCTAAGGGTGTCAAACCTTGTTAGTAAGGGGGCATGTACTGATGTTTATTCTATTAAGGGCAGATGTTTGACAAATAAATAGATTTAAATGAAAAACACTGGTAGAAATATCAGACACCCGCGAAAAACAAAATCAAACAAAACAATACCACAAACATACATCTAAATATGTCCACGTCTACCAGTGGAGTTAGATTTGAAATATTATTTCACAAGTCCATTGGGTTGGTGAAAAATGTCACATTTCTGTGAAGTTGAGCTCCCTCTGATTCTCAAAGCTGCTATAGGcccatatactgtataatacaaaATGAGTATCCAGTGTAAGCCTAAGCATGGGCAAATCACTGTGCTCCTTAGGGCAATAGGCAACATTCTCTATGCACAGTACCCTCTTGTACTGTAGGAATGCATTCTTCCCTCAGCAATGggacagtccaaaatcatatcaACACAACAGTTATGGCCAGCATCTCCCTATTAGTCATTTTCTTAGCTCTTACCTCTGGGAAgtgtgtacacacaaacacaagagcTGTCATTGTGCAAGTCTATGGTAGCGAGTGAGGGGCATAGCCACATGACATACAGCCATGCTCTCACTCCCTGGTATGGTGCCATCTGAGCTCAGTCCTTGGCGTCACCCACCCCATCTGCGTTGATGGCAAACATGGCTTCAGACTCAGGGAGGCAGGGCGAGTCGTAAATTTTGCAGATCCTCGTTTCGCCGCGGCCTTTCCTCAAGTACAGTCGGGTAGTGGAGGCATGTGCCATGATGTTGCCCCCGATAGGTTTTTTAGGGTCTGCTGAGAACATGGCGGCACCGTCTACCTGGGCCACCACCTGATTGGTTATCACCACAGCAACGCCAAACTCGTCTGCTAGCCTTAGCAGCATTCTCAGGAAGCGTCCCAGGTGGCCTTGCCGTGCAGCGAGCTCTCCCCTCCCGGAGTAGTCGGTTCTGTAGAGGGCTGTGGCACTGTCCACTATCAGCAGGGCATACCTGGACTCTGCCATCATGGCTGAGGCTTGGTAAAGAAGCTGGGTCTGGTGGTCTGTGTTAAAGGCCCTAGCGTAGGCTACGTTGTCCAGAACGTCACTCCCAACAAGTCCATACCGCTCTGCTACAGCCAGTAACCTCTCTGGTCTGAAGGTCCCCTCTGTATCAATGTACATGGCTTTTCCCTCTCCACCACCCTGGTCAATGGGCAACTGGCAGGTGACTGCAAGGGTGTGGCACAGCTGTGTTTTTCCTGTCCGGAACTCTCCAAACATTTCTGTGATGGAGCCTGTCTCTATcccacCCTGTAGCAGCTTGTCCAGCTCTTTGGACCCAGTGGAGATCTGGATGATTTCAGCTCGGCGTTGGTGGAACTCTGTTGCTGTGGTGAAGCCCATGGGCACTAGTTTGGCAGCTTCAGCCAGAACTTTGTCTGCTTTGGCCTCACTGATCCCCTTGATGTTAAGCAGCTCCTTCTTGGGGGCATAGGCCACTGCCTCAATGGTGTGGAAGCCTGCATCCTCCAGCTTCTTTATGTCACTGGCACTGATGCCACATTGCTGTGTAGGAAAC
>TU785309
CAGAAACTATGGTTCTTGAACGTACAAACAAATAGAGAAAATGTAGTCGCTAAGGGTGTCAAACCTTGTTAGTAAGGGGGCATGTACTGATGTTTATTCTATTAAGGGCAGATGTTTGACAAATAAATAGATTTAAATGAAAAACACTGGTAGAAATATCAGACACCCGCGAAAAACAAAATCAAACAAAACAATACCACAAACATACATCTAAATATGTCCACGTCTACCAGTGGAGTTAGATTTGAAATATTATTTCACAAGTCCATTGGGTTGGTGAAAAATGTCACATTTCTGTGAAGTTGAGCTCCCTCTGATTCTCAAAGCTGCTATAGGcccatatactgtataatacaaaATGAGTATCCAGTGTAAGCCTAAGCATGGGCAAATCACTGTGCTCCTTAGGGCAATAGGCAACATTCTCTATGCACAGTACCCTCTTGTACTGTAGGAATGCATTCTTCCCTCAGCAATGggacagtccaaaatcatatcaACACAACAGTTATGGCCAGCATCTCCCTATTAGTCATTTTCTTAGCTCTTACCTCTGGGAAgtgtgtacacacaaacacaagagcTGTCATTGTGCAAGTCTATGGTAGCGAGTGAGGGGCATAGCCACATGACATACAGCCATGCTCTCACTCCCTGGTATGGTGCCATCTGAGCTCAGTCCTTGGCGTCACCCACCCCATCTGCGTTGATGGCAAACATGGCTTCAGACTCAGGGAGGCAGGGCGAGTCGTAAATTTTGCAGATCCTCGTTTCGCCGCGGCCTTTCCTCAAGTACAGTCGGGTAGTGGAGGCATGTGCCATGATGTTGCCCCCGATAGGTTTTTTAGGGTCTGCTGAGAACATGGCGGCACCGTCTACCTGGGCCACCACCTGATTGGTTATCACCACAGCAACGCCAAACTCGTCTGCTAGCCTTAGCAGCATTCTCAGGAAGCGTCCCAGGTGGCCTTGCCGTGCAGCGAGCTCTCCCCTCCCGGAGTAGTCGGTTCTGTAGAGGGCTGTGGCACTGTCCACTATCAGCAGGGCATACCTGGACTCTGCCATCATGGCTGAGGCTTGGTAAAGAAGCTGGGTCTGGTGGTCTGTGTTAAAGGCCCTAGCGTAGGCTACGTTGTCCAGAACGTCACTCCCAACAAGTCCATACCGCTCTGCTACAGCCAGTAACCTCTCTGGTCTGAAGGTCCCCTCTGTATCAATGTACATGGCTTTTCCCTCTCCACCACCCTGGTCAATGGGCAACTGAGTTGGGGAAAAGCACAATAGATCAAAAACGGAATGTCCTGAGTGCTATCGTCATATTCTGTGAGC

Function

symbol description
rad51 Predicted to enable DNA binding activity and catalytic activity, acting on DNA. Acts upstream of or within several processes, including double-strand break repair via homologous recombination; hematopoietic stem cell proliferation; and response to methylmercury. Predicted to be located in nucleus. Predicted to be active in condensed nuclear chromosome. Is expressed in brain; gill; liver; musculature system; and testis. Used to study Fanconi anemia. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group R; breast cancer; congenital mirror movement disorder; and ovarian cancer. Orthologous to human RAD51 (RAD51 recombinase).

NR:

description
DNA repair protein RAD51 homolog A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU785308 False 1842 TUCP 0.49 11 25517566 25521288
TU785310 False 1621 TUCP 0.49 9 25518463 25521288
TU785309 True 1329 lncRNA 0.48 6 25519159 25521288

Neighbor

gene id symbol gene type direction distance location
LOC110529682 LOC106571470 coding downstream 15724 25497573 ~ 25503435 (-)
LOC110529680 disp1 coding downstream 28885 25416277 ~ 25490274 (-)
LOC110529676 LOC106571466 coding downstream 192861 25323627 ~ 25326298 (-)
LOC110529677 brox coding downstream 198347 25310439 ~ 25320812 (-)
LOC110529678 LOC106571467 coding downstream 209376 25307431 ~ 25309783 (-)
LOC110529692 LOC106607895 coding upstream 222736 25744024 ~ 25758350 (-)
LOC110529693 LOC106571480 coding upstream 237589 25758877 ~ 25775028 (-)
LOC110529218 NA coding upstream 275612 25796900 ~ 25800394 (-)
LOC110529694 LOC106571481 coding upstream 280032 25801320 ~ 25805570 (-)
LOC110529696 LOC106571482 coding upstream 333292 25854580 ~ 25873677 (-)
G689728 NA non-coding downstream 4005 25514401 ~ 25515154 (-)
G689688 NA non-coding downstream 106031 25412850 ~ 25413128 (-)
G689687 NA non-coding downstream 106702 25412078 ~ 25412457 (-)
G689684 NA non-coding downstream 108851 25409989 ~ 25410308 (-)
G689683 NA non-coding downstream 109183 25409729 ~ 25409976 (-)
G689737 NA non-coding upstream 13669 25534957 ~ 25535231 (-)
G689741 LOC106581772 non-coding upstream 19799 25541087 ~ 25541386 (-)
G689742 NA non-coding upstream 21011 25542299 ~ 25542596 (-)
G689747 NA non-coding upstream 65093 25586381 ~ 25587286 (-)
G689780 NA non-coding upstream 126850 25648138 ~ 25651980 (-)
G689685 NA other downstream 108027 25410823 ~ 25411132 (-)
G689656 tlr5m other downstream 111812 25376122 ~ 25407347 (-)
LOC110529665 LOC106571552 other downstream 521324 24992535 ~ 25010299 (-)
G688922 NA other downstream 782119 24736046 ~ 24737040 (-)
G688537 NA other downstream 837733 24680967 ~ 24681426 (-)
G689810 LOC106571475 other upstream 142877 25664165 ~ 25664665 (-)
G690033 NA other upstream 443891 25965179 ~ 25965493 (-)
G690073 NA other upstream 469390 25990678 ~ 25991143 (-)
cenpw LOC106571497 other upstream 907827 26428702 ~ 26430888 (-)

Expression


Co-expression Network