G689506


Basic Information

Item Value
gene id G689506
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25744128 ~ 25746736 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU785066
GAATAAATTAATGTACTGTAGTACCACATGACAAGACATGTAAACATAAAAAAACCCAAAATGGGGGAAGAAGTATAGTGCATTAAAAATAAATGAGTAGATTATATATACAAAATTTTAGGCATTTACAAAGGCAGCCTTTTTTGTTGCTTGTGTTTATATAAATATAATTCTCTAGATAAAGTGTGGATATACGCTGATATGTTTGCTAAAATAGAGGGACCAGGCGACGAGAGGGGCAGAGCTCCATCCGAGTCAATAACCTTCTCTGATCTCCGTGACAACCCAAATTATACTACTCAATTTGACTCCAGTTTCAAGGAGTCCAAACCCCACCCAAGCTAGTATACATTCCAGTTCGGCTTAACTTTCTCATTGCAACGTGGTTCAATGCTAAGGATTCCTTTAGTGTGTCATTATTGCTTACCATTCATTTGATTTATCTGAAGTAAAAGTGCATGCAGCACATGCTAGGGGTTGTGAATGCTTTTGAAGCTAGCTACAATTGAAAGATAGTTGCATATGATTCTGTACAGTACCTAGAGGTCTGCTGGCTTCCCTTACTAAAGAAATCTACCTTCGGAGACATTCAACTGAAACCCATTACCTCGTCACACTTTGATACAGGAAAAAGCTTCCATTAGACACCATGATTCGACTTCTAATAGCGAGGACAGAACTGGCACTACCGTGGACTTCTTACCTGGGATGTCTAGTTGCTGTCTATAGGTGTCAGGCTTCTAAATACTTTGTCCAGCAGTTACTACAACAGTAGTTTTACTATAGAGCTACAAACTGATGCTACAACAACCACTTGGCTAGGTCTTCAGGTTCTAGCCTATACTTATCTGTAGCCTTATCAATCACTGATGTCATTATACTACTACTCAGGCCTAGGTCTGCCAAAACCTACTACATGGCTACTCAAGCTGCTGGGCTTGCTAATGTTaaaacataccccccccccccccaaacatggAGTAACAACATCGCCACCACTGCTCTTGGTGTAGAGTAGTGATAGACTGGACCCGATCGGTTTGTGTGCGACTGCAATTATTGTGCACTGAGCTTAGTTACCTGCCGACGATTTGACAGGTTTGTGGCGTACCAAGCATAGCGTTGCCATGACAGATAGTGCTGGTGAAGGTTGGCGGTTGTGGATGTAGACAAGAGGTTATGGAAATGTTGGTGTTTGAAGGATCTCTCCTGTCTTTGAACAGAAACCTCCCTACCTCCGTTACATTGTCTCCATAAGTACATACAACGATTTAGTGTTCTACTACTGTTGCTACATCCACTGGACAAGAACAGATCACCGACTGATTACATCATCACTTGATCCTCAACACAACATCAAAGAGTTATTGGTTTTAAAAACAACATGGTAGGATCAACTCACAGCAATTACACCATTATTTCAACATCCTAATATTAGTGTTATATCCACTGAAATACTCAACCCTGAACTTTCAGTACATACTAAGAGGTGAGGTATGAGGCAGGCAAGTTTACAGGGTCATAATGTAACATGTCACTAGGAGGGGTCAGAGGTTGACAGCTATTGTTTACATAAGAATGGTGATGTCATAAGTGGCTACACTACAGGCAGCAAAAAGTCCCTAATTTCTTTAAAACTACAGAAAAATAAAAAGCTGTATAAGCTTGTTCTTTCAGGTTACCTTCTAACTAACTTCTGTCATTATTTTTTCCCTTTTTCGAGAAGTTATCAATTAAAAATACATGTTCTATTTGTGCAATTTCCCCATTGTAGTATACAAAATAATGATTTATAACATGTCACTAGTGTAGCTCTCTAATCCTATGTACCAGCATGCAAAGACAAACTGACAGGGTTTGTGAAATGTAAAAgagatgggggaaaaaaaaaacaaggcttCTGAATCCCACTAATACCATAGTCTGTCAATCATTAATTACTCTGATCCATAGGATCTCTCTGTTAAAGCGGAGCGCTCCCATTGGACTCCATGACTGATCCCACCCATAGAGGTTCAAGAAGCCTTATTTCCCCATCCCTCCTATATACCCCAGTCAGAGGGCATTGGCCAGTCTAACAGAGGAAAGACGCATTCCAGTGGTCAAGTGACTTCTCGTCTCCTCACCCTATTTCTTACTGATGTGAAAAGACAGACCGGTGAATGTAGAGACAGGAATTAGTTTCCCCTCTCAAGTTCTTTCACATTAGTGCAAACAGAGGATAGAAAATAAGTACAGAAAGACACTTTAGACAATGGAGAGTAATACTGCCAACAGGCTAACAGAGACACTAACATGCAGAGAAGACAAAACGAATGTGAGATTATAGCATTAGAACATTAAAACACACTTAAAAATGACATGTAAAAAGGTAAAGCATCAGGTATTAAAATGTGAATCTTATAAGTCGAGGGAAAAGATGGAGTCgtcgtcaccccccccccccaacaggaaGAGTCCACCTTagaggggtgtggggggggggctctcCTTCCATTGGTATGTTCCAGAAATCTGCAGCTCCTGAGTGTTCCGTCAGAATGTTCTAGAACAGGGGGCTCCTCCACTAGGTCTATGTGGGACACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU785066 True 2587 lncRNA 0.41 2 25744128 25746736

Neighbor

gene id symbol gene type direction distance location
LOC110529691 LOC106571477 coding upstream 10328 25693543 ~ 25733800 (+)
LOC110529690 LOC106571476 coding upstream 58251 25678604 ~ 25685894 (+)
LOC110529689 LOC106571475 coding upstream 68041 25653300 ~ 25676087 (+)
LOC110529687 LOC106571474 coding upstream 92141 25607940 ~ 25651987 (+)
LOC110529686 pura1 coding upstream 143586 25587443 ~ 25600542 (+)
LOC110529695 nagab coding downstream 59165 25805901 ~ 25809907 (+)
LOC110529698 LOC106571483 coding downstream 256859 26003595 ~ 26006629 (+)
LOC110529699 LOC106571484 coding downstream 330761 26077497 ~ 26080970 (+)
ngs LOC106571488 coding downstream 368270 26115006 ~ 26118968 (+)
LOC110529702 LOC106607944 coding downstream 386461 26133191 ~ 26195544 (+)
G689507 NA non-coding upstream 192 25743679 ~ 25743936 (+)
G689502 NA non-coding upstream 7657 25736238 ~ 25736471 (+)
G689493 NA non-coding upstream 28271 25715632 ~ 25715857 (+)
G689490 NA non-coding upstream 30485 25713412 ~ 25713643 (+)
G689449 NA non-coding downstream 12171 25758907 ~ 25762187 (+)
G689517 NA non-coding downstream 34123 25780859 ~ 25781090 (+)
G689519 NA non-coding downstream 37045 25783781 ~ 25784068 (+)
G689520 NA non-coding downstream 37878 25784614 ~ 25784826 (+)
G689528 NA non-coding downstream 45612 25792348 ~ 25792624 (+)
G688823 NA other upstream 682678 25058953 ~ 25061450 (+)
G688613 NA other upstream 759302 24982729 ~ 24984826 (+)
LOC110529210 ift172 other upstream 1753129 23961761 ~ 23991295 (+)
LOC110529640 LOC106571431 other upstream 2220093 23484408 ~ 23524035 (+)
LOC110529706 LOC106571495 other downstream 634392 26381097 ~ 26393547 (+)
jag2b LOC106571712 other downstream 1809548 27498161 ~ 27602164 (+)
G692343 LOC106571710 other downstream 2148965 27895701 ~ 27895987 (+)
xrcc3 xrcc3 other downstream 2223740 27951635 ~ 27972016 (+)

Expression


Co-expression Network