G690307


Basic Information

Item Value
gene id G690307
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26250617 ~ 26252930 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU785966
TCACAAAGCCGACGAGACCCACGATATTAATCACGTTGTTGTCTTCGTCATCCCCTAGCTCGACTTCCCCTGACACTATGTTGTCAGTGAGCGAGAGTAGGGAATCAACTGGGCTTGGCTGTGGGGAGTTGAGCCTCGGCCGGTGgctgagaagggagggagggggtagtaATAGCGGAGAGTTTTAGCCTCCTTTTCTAACCTGCTCTAGAGAGCAATTTACAATGCTTACACTACTCTGGGTTATCGACTGCTTCCTGAGCAGGTTCTCGTCCCAGACAATTGATGCACAGAGTGTGAAAATCCTTCCCCGCAACCGCGGTGCCGTAATCACAACAACGTGGTGGTTTGGGCGCGAGGCTCATCTAGGGATGTGGCAGCAGTTACCATGGTGGAGAAaactatactgaataaaaatctcAACGCAACATACAACCATGGCACAGCCATGCGTGGGCCTGGAAGGAAAtatgcccacccacttgggaggtaggcccacccactggggaaccaggccagccaatcagaattaattTTTCCCCaccaaagggctttattacagatcaAAATACtgctcagtttcatcagctgtccagttgGCTGGTCTCAGGCGATCCCGTAGTTGAAGAAGCTGGGTGTGGAGGTCCTAGTTTGGCGTGgtaacacgtggtctgcggttgtgaggctggttggacgtactgccaaattctctaaaatgacgttgagatggcttatggtagagaaatgaacattcaattctctggcaacagctctggtggacattcctgcagtctcatgccaattgcacacttcctcaacttgacatctgtgtcattgtgttttGTTGACAGAACTGTGCATTTGAGGGGCCTTTTATTGacaccagcacaaggtgcacctgtgtgatgatcatgctgtttaatcagcttcttgatatgtcacacctgtcaggattatcttggcaaagaagaaataaTGACTAACAGGGAAACAaattaaacaaatttgtgcacaacatttcagAGAGATAcggtttttgtgcgtatggaacatttctgggatcttttatttcagatcatgaaacatgggaccaacactttacatgttgcatttgtttttatactgaataaaaatatgtaTACTTTAGTTAGGCATAAGCTAACTAGTAGAAGCCTTACAGCTAAAGCTAGCTACAACCGTGAAGATAGTGACACGTTAGCAAGCTATCAGCTACCCTTGCTAAGGCGCACTGTAGCTAGCATCGTGTTGGTCGAAGGCTTGTGCTAACCTGGTCAGACGAAGCTTAACGGTGAGGGCAAACCGAACCTCGATAGCTAGCCATGTGGAGCCATGAATTATTTTCAAAGCAAAAACCTTTCTGTCGGTACTCAACTATTGACAGAAGCTGACGTTCTATGTTTCGCAGCATTAACCTCAAGTTTCGTGTGATCAGTTCAGTAGGAAACCAGGAATCTAGTCAACTAGTCAAGCTGAGTAGAGTTTAGTGAACGTATTCTCTAACGCAAGAATGAGAGGTGAGAATTACCAGTTTGGCGGGAGAGTGGCTCCCCTTGTGGAGGAGAGGGGCTCACCTGATTCGCCACTcgacctgtctgtctccaacagacTCTGTTTGATTGGATGCTTTGAGCTAATGGACACACTCAGGCGCATCTCATAGTACGACATTGAAAAGAGTATTTGAAATGTAACTAGGTAATTCCTATAGACATCATTATATATCATAGTCTGAGTTAACCCttgtatttaatttttattttgcaTGGTCTCGATGCACACTCACAGCTTCCACACACTCACGtgcactgacactccaacacacacatactgtaacatTCACTCACATTAACAGTATACTGactctagacacacacacactcacatacaattATAACTGATGCTGTTTCTACCCTGTTTATCATATATTCTGATGCCTTGTCACCTTTCCACTATACATATCTACAGTGCCtaaagaaagtattcacacccctttactttttccagaTTTGTTGTTAcagctgaatttaaaatggattacatttagattttgtgtcactggcctatgtgtcaaagaaattaactatgtcctgaatacaaagtgttatgtttggggcaaatccaacacaacacatcactgagtaccacttttcatattttcaagcatggtggtgtcagtatcatgttatgggtatgcttgtcatcggcaagggctgggcgatatggccaaaatatatcacagtatttatttatttatttatttaagagggga
>TU785965
GCGGAGAGTTTTAGCCTCCTTTTCTAACCTGCTCTAGAGAGCAATTTACAATGCTTACACTACTCTGGGTTATCGACTGCTTCCTGAGCAGGTTCTCGTCCCAGACAATTGATGCACAGAGTGTGAAAATCCTTCCCCGCAACCGCGGTGCCGTAATCACAACAACGTGGTGGTTTGGGCGCGAGGCTCATCTAGGGATGTGGCAGCAGTTACCATGGTGGAGAAaactatactgaataaaaatctcAACGCAACATACAACCATGGCACAGCCATGCGTGGGCCTGGAAGGAAAtatgcccacccacttgggaggtaggcccacccactggggaaccaggccagccaatcagaattaattTTTCCCCaccaaagggctttattacagatcaAAATACtgctcagtttcatcagctgtccagttgGCTGGTCTCAGGCGATCCCGTAGTTGAAGAAGCTGGGTGTGGAGGTCCTAGTTTGGCGTGgtaacacgtggtctgcggttgtgaggctggttggacgtactgccaaattctctaaaatgacgttgagatggcttatggtagagaaatgaacattcaattctctggcaacagctctggtggacattcctgcagtctcatgccaattgcacacttcctcaacttgacatctgtgtcattgtgttttGTTGACAGAACTGTGCATTTGAGGGGCCTTTTATTGacaccagcacaaggtgcacctgtgtgatgatcatgctgtttaatcagcttcttgatatgtcacacctgtcaggattatcttggcaaagaagaaataaTGACTAACAGGGAAACAaattaaacaaatttgtgcacaacatttcagAGAGATAcggtttttgtgcgtatggaacatttctgggatcttttatttcagatcatgaaacatgggaccaacactttacatgttgcatttgtttttatactgaataaaaatatgtaTACTTTAGTTAGGCATAAGCTAACTAGTAGAAGCCTTACAGCTAAAGCTAGCTACAACCGTGAAGATAGTGACACGTTAGCAAGCTATCAGCTACCCTTGCTAAGGCGCACTGTAGCTAGCATCGTGTTGGTCGAAGGCTTGTGCTAACCTGGTCAGACGAAGCTTAACGGTGAGGGCAAACCGAACCTCGATAGCTAGCCATGTGGAGCCATGAATTATTTTCAAAGCAAAAACCTTTCTGTCGGTACTCAACTATTGACAGAAGCTGACGTTCTATGTTTCGCAGCATTAACCTCAAGTTTCGTGTGATCAGTTCAGTAGGAAACCAGGAATCTAGTCAACTAGTCAAGCTGAGTAGAGTTTAGTGAACGTATTCTCTAACGCAAGAATGAGAGGTGAGAATTACCAGTTTGGCGGGAGAGTGGCTCCCCTTGTGGAGGAGAGGGGCTCACCTGATTCGCCACTcgacctgtctgtctccaacagacTCTGTTTGATTGGATGCTTTGAGCTAATGGACACACTCAGGCGCATCTCATAGTACGACATTGAAAAGAGTATTTGAAATGTAACTAGGTAATTCCTATAGACATCATTATATATCATAGTCTGAGTTAACCCttgtatttaatttttattttgcaTGGTCTCGATGCACACTCACAGCTTCCACACACTCACGtgcactgacactccaacacacacatactgtaacatTCACTCACATTAACAGTATACTGactctagacacacacacactcacatacaattATAACTGATGCTGTTTCTACCCTGTTTATCATATATTCTGATGCCTTGTCACCTTTCCACTATACATATCTACAGTGCCtaaagaaagtattcacacccctttactttttccagaTTTGTTGTTAcagctgaatttaaaatggattacatttagattttgtgtcactggcctatgtgtcaaagaaattaactatgtcctgaatacaaagtgttatgtttggggcaaatccaacacaacacatcactgagtaccacttttcatattttcaagcatggtggtgtcagtatcatgttatgggtatgcttgtcatcggcaagggctgggcgatatggccaaaatatatcacagtatttatttatttatttatttaagaggggaaaaaagaagaaaaataaattgacg
>TU785967
GCGGAGAGTTTTAGCCTCCTTTTCTAACCTGCTCTAGAGAGCAATTTACAATGCTTACACTACTCTGGGTTATCGACTGCTTCCTGAGCAGGTTCTCGTCCCAGACAATTGATGCACAGAGTGTGAAAATCCTTCCCCGCAACCGCGGTGCCGTAATCACAACAACGTGGTGGTTTGGGCGCGAGGCTCATCTAGGGATGTGGCAGCAGTTACCATGGTGGAGAAaactatactgaataaaaatctcAACGCAACATACAACCATGGCACAGCCATGCGTGGGCCTGGAAGGAAAtatgcccacccacttgggaggtaggcccacccactggggaaccaggccagccaatcagaattaattTTTCCCCaccaaagggctttattacagatcaAAATACtgctcagtttcatcagctgtccagttgGCTGGTCTCAGGCGATCCCGTAGTTGAAGAAGCTGGGTGTGGAGGTCCTAGTTTGGCGTGgtaacacgtggtctgcggttgtgaggctggttggacgtactgccaaattctctaaaatgacgttgagatggcttatggtagagaaatgaacattcaattctctggcaacagctctggtggacattcctgcagtctcatgccaattgcacacttcctcaacttgacatctgtgtcattgtgttttGTTGACAGAACTGTGCATTTGAGGGGCCTTTTATTGacaccagcacaaggtgcacctgtgtgatgatcatgctgtttaatcagcttcttgatatgtcacacctgtcaggattatcttggcaaagaagaaataaTGACTAACAGGGAAACAaattaaacaaatttgtgcacaacatttcagAGAGATAcggtttttgtgcgtatggaacatttctgggatcttttatttcagatcatgaaacatgggaccaacactttacatgttgcatttgtttttatactgaataaaaatatgtaTACTTTAGTTAGGCATAAGCTAACTAGTAGAAGCCTTACAGCTAAAGCTAGCTACAACCGTGAAGATAGTGACACGTTAGCAAGCTATCAGCTACCCTTGCTAAGGCGCACTGTAGCTAGCATCGTGTTGGTCGAAGGCTTGTGCTAACCTGGTCAGACGAAGCTTAACGGTGAGGGCAAACCGAACCTCGATAGCTAGCCATGTGGAGCCATGAATTATTTTCAAAGCAAAAACCTTTCTGTCGGTACTCAACTATTGACAGAAGCTGACGTTCTATGTTTCGCAGCATTAACCTCAAGTTTCGTGTGATCAGTTCAGTAGGAAACCAGGAATCTAGTCAACTAGTCAAGCTGAGTAGAGTTTAGTGAACGTATTCTCTAACGCAAGAATGAGAGGTGAGAATTACCAGTTTGGCGGGAGAGTGGCTCCCCTTGTGGAGGAGAGGGGCTCACCTGATTCGCCACTcgacctgtctgtctccaacagacTCTGTTTGATTGGATGCTTTGAGCTAATGGACACACTCAGGCGCATCTCATAGTACGACATTGAAAAGAGTATTTGAAATGTAACTAGGTAATTCCTATAGACATCATTATATATCATAGTCTGAGTTAACCCttgtatttaatttttattttgcaTGGTCTCGATGCACACTCACAGCTTCCACACACTCACGtgcactgacactccaacacacacatactgtaacatTCACTCACATTAACAGTATACTGactctagacacacacacactcacatacaattATAACTGATGCTGTTTCTACCCTGTTTATCATATATTCTGATGCCTTGTCACCTTTCCACTATACATATCTACAGTGCCtaaagaaagtattcacacccctttactttttccagaTTTGTTGTTAcagctgaatttaaaatggattacatttagattttgtgtcactggcctatgtgtcaaagaaattaactatgtcctgaatacaaagtgttatgtttggggcaaatccaacacaacacatcactgagtaccacttttcatattttcaagcatggtggtgtcagtatcatgttatgggtatgcttgtcatcggcaagggctgggcgatatggccaaaatatatcacagtatttatttatttatttatttaagagggga

Function

NR:

description
hypothetical protein EH28_06569

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU785966 False 2290 lncRNA 0.44 1 26250617 26252906
TU785965 False 2140 lncRNA 0.43 1 26250791 26252930
TU785967 True 2116 lncRNA 0.43 1 26250791 26252906

Neighbor

gene id symbol gene type direction distance location
LOC110529702 LOC106607944 coding upstream 78270 26133191 ~ 26195544 (+)
ngs LOC106571488 coding upstream 131649 26115006 ~ 26118968 (+)
LOC110529699 LOC106571484 coding upstream 169647 26077497 ~ 26080970 (+)
LOC110529698 LOC106571483 coding upstream 243988 26003595 ~ 26006629 (+)
LOC110529695 nagab coding upstream 440710 25805901 ~ 25809907 (+)
LOC110529705 LOC106571492 coding downstream 13329 26266259 ~ 26271258 (+)
LOC110529707 LOC106571493 coding downstream 110247 26363177 ~ 26376176 (+)
LOC110529706 LOC106571495 coding downstream 128167 26381097 ~ 26393547 (+)
LOC110529712 LOC106571498 coding downstream 213248 26466178 ~ 26590958 (+)
kcnh5a LOC106571504 coding downstream 360678 26613608 ~ 26734774 (+)
G690304 NA non-coding upstream 88 26248083 ~ 26250529 (+)
G690333 NA non-coding upstream 7961 26242359 ~ 26242656 (+)
G690188 NA non-coding upstream 100916 26148973 ~ 26149701 (+)
G690135 NA non-coding upstream 163022 26083741 ~ 26087595 (+)
G690148 NA non-coding upstream 183695 26066607 ~ 26066922 (+)
G690309 NA non-coding downstream 6651 26259581 ~ 26260475 (+)
G690308 NA non-coding downstream 21722 26274652 ~ 26277497 (+)
G690348 NA non-coding downstream 72400 26325330 ~ 26348451 (+)
G690386 NA non-coding downstream 99099 26352029 ~ 26352303 (+)
G690394 NA non-coding downstream 107755 26360685 ~ 26360884 (+)
LOC110529690 LOC106571476 other upstream 568890 25678604 ~ 25685894 (+)
G688823 NA other upstream 1189167 25058953 ~ 25061450 (+)
G688613 NA other upstream 1265791 24982729 ~ 24984826 (+)
LOC110529210 ift172 other upstream 2259618 23961761 ~ 23991295 (+)
jag2b LOC106571712 other downstream 1303354 27498161 ~ 27602164 (+)
G692343 LOC106571710 other downstream 1642771 27895701 ~ 27895987 (+)
xrcc3 xrcc3 other downstream 1717546 27951635 ~ 27972016 (+)
G692424 NA other downstream 1816970 28069900 ~ 28070228 (+)

Expression


Co-expression Network