G690443


Basic Information

Item Value
gene id G690443
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26452388 ~ 26460132 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU786119
CCATTCCGTCAGTGAAGTACTTGCAGCTCATCTTGATGAACTTGACAATGGCGGGGTTCTCATCCTCGGACAGGGAAGACCGCTCACGTCGTAGCGGTCTTACTGATCTGCCACTGAAGTCTCCATCCTGTGACACCTTCTCTGTTAGATCTTTGATGGAGGTGGGGTCAGAGGAACCCACAGACTGAGAGTCGGCTTCCGATTGGCCCACGTCAGGAACAAATAGCTTCTGTCCTGGATAGACACTGCGGGAAAAGAGGCGGTTGAGCTGCACCAATTTGTTGGGGGTGATATTGAACTTCAGAGCAATGCTGTTTAGAGATTCTTGGGGTCCCACAGTATACTCCACTGTCCCGGGGggcctcctcttctctttcttggCCTGGCTGCTCATGTTGTTGCTGTCATCTAAACCTTCAGGTGGGTTTGGTATTATCCTCTCCTGAGGATCAGAAAAAGCAGGGAGGGATGGGCAGGAGATGACGGGCGTCTTTAAGGACGAATCCGACGGGTTCTGCTCAGCCATAGCCTTCTCTGATTGGCTCTGTTTGAGCTGTCTCCGTCTCTTCAACCTGCAAAGTAGCCCGgcttcctgtctctcttctccatcaGTGCGGTATTCTAAAGCTGCATGCACCccaacgcacacacacgcgccgAGCCTGTGGGCACAACGTCCTAATGATCCCGCTCTTCTCCCTTTCCACAATCTTCCCACTTCCTTATCATGGGGGAGATAAAAATAATTATTGAAGGGAATTAGCTAAAATATCGGCATCATCTGCTGTATGCAGCAACGCAGAAGTGTACCAAACAGCAAGCCAAAAGACGCCAATCGAGCTGACTGAAGGTTAATGCCACAGCGTAGTCAGAGTGCTGAAA
>TU786120
CCATTCCGTCAGTGAAGTACTTGCAGCTCATCTTGATGAACTTGACAATGGCGGGGTTCTCATCCTCGGACAGGGAAGACCGCTCACGTCGTAGCGGTCTTACTGATCTGCCACTGAAGTCTCCATCCTGTGACACCTTCTCTGTTAGATCTTTGATGGAGGTGGGGTCAGAGGAACCCACAGACTGAGAGTCGGCTTCCGATTGGCCCACGTCAGGAACAAATAGCTTCTGTCCTGGATAGACACTGCGGGAAAAGAGGCGGTTGAGCTGCACCAATTTGTTGGGGGTGATATTGAACTTCAGAGCAATGCTGTTTAGAGATTCTTGGGGTCCCACAGTATACTCCACTGTCCCGGGGggcctcctcttctctttcttggCCTGGCTGCTCATGTTGTTGCTGTCATCTAAACCTTCAGGTGGGTTTGGTATTATCCTCTCCTGAGGATCAGAAAAAGCAGGGAGGGATGGGCAGGAGATGACGGGCGTCTTTAAGGACGAATCCGACGGGTTCTGCTCAGCCATAGCCTTCTCTGATTGGCTCTGTTTGAGCTGTCTCCGTCTCTTCAACCTGAGgatatggagagaggggtggTCAATCTGTTTACTTCCAATCATGCTTATGAACATTGGATTTCACGACTAATGAATGTTTCCTGTTAGGTTGTGAAAAACTCAAAAACAGAAATCCAAAACGTCACTGTCTTTTGCTTGCccactttctcttctcctctgtccttttT
>TU786121
CCATTCCGTCAGTGAAGTACTTGCAGCTCATCTTGATGAACTTGACAATGGCGGGGTTCTCATCCTCGGACAGGGAAGACCGCTCACGTCGTAGCGGTCTTACTGATCTGCCACTGAAGTCTCCATCCTGTGACACCTTCTCTGTTAGATCTTTGATGGAGGTGGGGTCAGAGGAACCCACAGACTGAGAGTCGGCTTCCGATTGGCCCACGTCAGGAACAAATAGCTTCTGTCCTGGATAGACACTGCGGGAAAAGAGGCGGTTGAGCTGCACCAATTTGTTGGGGGTGATATTGAACTTCAGAGCAATGCTGTTTAGAGATTCTTGGGGTCCCACAGTATACTCCACTGTCCCGGGGggcctcctcttctctttcttggCCTGGCTGCTCATGTTGTTGCTGTCATCTGAAAGACAGAGAAATAGGTCAGTGACACAGTATAGAGATTAATAAAAATAATCGCTCCGTTCATTCAGAAACAAAATGCATGTATACACCAACAAACTAGTGCACACTGCTTTAAATAGAATTATATTAAAAAGCATAACCCTAGctcgcgaacacacacacacacacggctagcTAGTATCCT
>TU786118
tgcactTCTGACCTTTTTTTAATGTGCCCATagaaaggctgtgtgtgtgaggcgTGTTTTACCTAAACCTTCAGGTGGGTTTGGTATTATCCTCTCCTGAGGATCAGAAAAAGCAGGGAGGGATGGGCAGGAGATGACGGGCGTCTTTAAGGACGAATCCGACGGGTTCTGCTCAGCCATAGCCTTCTCTGATTGGCTCTGTTTGAGCTGTCTCCGTCTCTTCAACCTGGCAAAGTAGCCCGgcttcctgtctctcttctccatcaGTGCGGTATTCTAAAGCTGCATGCACCccaacgcacacacacgcgccgAGCCTGTGGGCACAACGTCCTAATGATCCCGCTCTTCTCCCTTTCCACAATCTTCCCACTTCCTTATCATGGGGGAGATAAAAATAATTATTGAAGGGAATTAGCTAAAATATCGGCATCATCTGCTGTATGCAGCAACGCAGAAGTGTACCAAACAGCAAGCCAAAAGACGCCAATCGAGCTGACTGAAGGTTAATGCCACAGCGTAGTCAGAGTGCTGAAA

Function

NR:

description
nuclear receptor coactivator 7-like isoform X2

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU786119 False 882 lncRNA 0.51 6 26452388 26460132
TU786120 False 744 lncRNA 0.49 5 26452388 26458730
TU786121 False 594 lncRNA 0.47 4 26452388 26453435
TU786118 True 537 lncRNA 0.49 2 26458333 26460132

Neighbor

gene id symbol gene type direction distance location
LOC110529706 LOC106571495 coding upstream 58841 26381097 ~ 26393547 (+)
LOC110529707 LOC106571493 coding upstream 76212 26363177 ~ 26376176 (+)
LOC110529705 LOC106571492 coding upstream 181130 26266259 ~ 26271258 (+)
LOC110529702 LOC106607944 coding upstream 280041 26133191 ~ 26195544 (+)
ngs LOC106571488 coding upstream 333420 26115006 ~ 26118968 (+)
LOC110529712 LOC106571498 coding downstream 6046 26466178 ~ 26590958 (+)
kcnh5a LOC106571504 coding downstream 153476 26613608 ~ 26734774 (+)
ppm1ab LOC106571506 coding downstream 286992 26747124 ~ 26758023 (+)
LOC110529717 LOC106571508 coding downstream 339458 26799590 ~ 26835405 (+)
si:ch211-212g7.6 LOC106571509 coding downstream 385548 26845680 ~ 26868116 (+)
G690439 LOC106571501 non-coding upstream 2655 26449424 ~ 26449733 (+)
G690428 NA non-coding upstream 21449 26429117 ~ 26430939 (+)
G690394 NA non-coding upstream 91504 26360685 ~ 26360884 (+)
G690386 NA non-coding upstream 100085 26352029 ~ 26352303 (+)
G690348 NA non-coding upstream 103937 26325330 ~ 26348451 (+)
G690442 NA non-coding downstream 2523 26462655 ~ 26462892 (+)
G690530 NA non-coding downstream 134931 26595063 ~ 26650001 (+)
G690606 NA non-coding downstream 229512 26689644 ~ 26689879 (+)
G690619 NA non-coding downstream 241644 26701776 ~ 26702014 (+)
G690627 NA non-coding downstream 250078 26710210 ~ 26710417 (+)
LOC110529690 LOC106571476 other upstream 770661 25678604 ~ 25685894 (+)
G688823 NA other upstream 1390938 25058953 ~ 25061450 (+)
G688613 NA other upstream 1467562 24982729 ~ 24984826 (+)
jag2b LOC106571712 other downstream 1096152 27498161 ~ 27602164 (+)
G692343 LOC106571710 other downstream 1435569 27895701 ~ 27895987 (+)
xrcc3 xrcc3 other downstream 1510344 27951635 ~ 27972016 (+)
G692424 NA other downstream 1609768 28069900 ~ 28070228 (+)
btbd7 btbd7 other downstream 2035153 28495104 ~ 28605625 (+)

Expression


Co-expression Network