XLOC_026121 (zgc:162154)


Basic Information

Item Value
gene id XLOC_026121
gene name zgc:162154
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 9542168 ~ 9571309 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051036
aaacaatctcatttataacagaatgagTTACgctagtcaagctgcacctgattttgccttgatttgcttgcagATGTCTTGTCTTTTATCTtttgagtgacagtatttacaattttaaagtatttatttacgtatttacaattaacatttaaatgaatcTTTTCATGTTCGTTGGCTTTGTTTGTAGCtcagtaataaaacaaacaaacaaacaaacaaacaaacaaagactaTTTTAAACTAGAAATTACAATCTCTGTTCAAATCATTCCCCCCCAACCCTGCACATCATTCATACTCATGTCTCAGATGGGATAGTGGGCCAACGAGCCACCTTTGGCCTGCTGgttctagtttgggcatctcttgCTTATACAAACTGATCTGAATTATacgtattgtatttattttttaactaaaatcttaaataataatcattGGTTTTTCATTTTCGCTTCTGTAGtacaaaaatgcatataaaatgaGTATgggtaaataattaaatgcttAAACAATTCCTTCTGAAATCTTATTAAATGAACTGGACAAATTTGCAATCTTTGTTTACCCTATATCATTACAGCACATTGGTATTCGTTGCACAATTTTCTTGTCAAATATTAATCAATACACATGCTCAGGTACTTCCCTTTTAATTGTAAACTAGaatgtaaaaatgtgtatattttgtCCTTTAAGTGTTAGGATAGAAGATTAAGTGACAAAACACTTTATCTAATTGCATCATTctgtaagttatttatttaaaggttttattttcatattttgttatattttttctttcagtgTTTTTGGAGATGAAGTCTGTTTGTTTAATTCTGCTCATTTTAGGTGGAATTACAGATTCAGTATCAGCAGAGCGGTATGAAGTGTTGGGATCTGCAGGTCCTGTATTTGCATTTGCTGGTGAAGATGTGACTCTGCCCTGTTCAGTCAAACCCAACATCAGTGTTGTGGACATGAGAGTCGAGTGGTTTAGACTTGATCAGAAATACTCAGTAGTTCATCTCTATGAGGATCATGAAGACAGAAACACAGAGCAGATTCAGTCCTACAGAGGGAGAACTGAACTCAATCATCAACAACTACAAACAGGAAACGCATCACTCAGACTATCAGCAGTGAAAGTGTCTGATGAAGGACGCTATAAGTGTTTTATTCAGTCCAACTCAGTGTCTGATGATGCCACGATTAATTTTAAAGTTGAAgCTGTAGGAAGTCCTCCAATGATCACAGTAGATGGATTTGATCGTTCAGGAGGGCTTCATCTACTGTGTGAATCTGAAGGTTGGCATCCTGAACCTGATCTTGAGTGGCTGGACAGTGAAGGAGTCAGATTGAGTCCAGAATCTACAGAGATGCACAGAAACACAGACGGATTCAGTGTGAAACACACCGTCACTGTTCATCAGAGAGACGGCAAGATTCACTGCAGAGTCAAAGTGAGACACCACATGCTGGAGACACTGATCAGCTCTACAAGTAATATGTTTGCTTCGTGGAGGACATCAGTGATTGTGATATCAGTTTTTTCTGTGCTCAGTGTGATTGCTGGAATACTGATAACTGTGACTGTTCAGAAAAATAGCGCTCACAGTAAACTAAAGAAAGCCATGAGAACATTAGAACTAGATTACCATAAACTACATATAAGCAACGAGAAACTAAGTGAAGGTAAATCTGTctatattaaataatgcattattactTTTGTTTGCATCCACCAAACTATTTTCT
>TCONS_00051037
aaacaatctcatttataacagaatgagTTACgctagtcaagctgcacctgattttgccttgatttgcttgcagATGTCTTGTCTTTTATCTtttgagtgacagtatttacaattttaaagtatttatttacgtatttacaattaacatttaaatgaatcTTTTCATGTTCGTTGGCTTTGTTTGTAGCtcagtaataaaacaaacaaacaaacaaacaaacaaacaaagactaTTTTAAACTAGAAATTACAATCTCTGTTCAAATCATTCCCCCCCAACCCTGCACATCATTCATACTCATGTCTCAGATGGGATAGTGGGCCAACGAGCCACCTTTGGCCTGCTGgttctagtttgggcatctcttgCTTATACAAACTGATCTGAATTATacgtattgtatttattttttaactaaaatcttaaataataatcattGGTTTTTCATTTTCGCTTCTGTAGtacaaaaatgcatataaaatgaGTATgggtaaataattaaatgcttAAACAATTCCTTCTGAAATCTTATTAAATGAACTGGACAAATTTGCAATCTTTGTTTACCCTATATCATTACAGCACATTGGTATTCGTTGCACAATTTTCTTGTCAAATATTAATCAATACACATGCTCAGGTACTTCCCTTTTAATTGTAAACTAGaatgtaaaaatgtgtatattttgtCCTTTAAGTGTTAGGATAGAAGATTAAGTGACAAAACACTTTATCTAATTGCATCATTctgtaagttatttatttaaaggttttattttcatattttgttatattttttctttcagtgTTTTTGGAGATGAAGTCTGTTTGTTTAATTCTGCTCATTTTAGGTGGAATTACAGATTCAGTATCAGCAGAGCGGTATGAAGTGTTGGGATCTGCAGGTCCTGTATTTGCATTTGCTGGTGAAGATGTGACTCTGCCCTGTTCAGTCAAACCCAACATCAGTGTTGTGGACATGAGAGTCGAGTGGTTTAGACTTGATCAGAAATACTCAGTAGTTCATCTCTATGAGGATCATGAAGACAGAAACACAGAGCAGATTCAGTCCTACAGAGGGAGAACTGAACTCAATCATCAACAACTACAAACAGGAAACGCATCACTCAGACTATCAGCAGTGAAAGTGTCTGATGAAGGACGCTATAAGTGTTTTATTCAGTCCAACTCAGTGTCTGATGATGCCACGATTAATTTTAAAGTTGAAgCTGTAGGAAGTCCTCCAATGATCACAGTAGATGGATTTGATCGTTCAGGAGGGCTTCATCTACTGTGTGAATCTGAAGGTTGGCATCCTGAACCTGATCTTGAGTGGCTGGACAGTGAAGGAGTCAGATTGAGTCCAGAATCTACAGAGATGCACAGAAACACAGACGGATTCAGTGTGAAACACACCGTCACTGTTCATCAGAGAGACGGCAAGATTCACTGCAGAGTCAAAGTGAGACACCACATGCTGGAGACACTGATCAGCTCTACAAGTAATATGTTTGCTTCGTGGAGGACATCAGTGATTGTGATATCAGTTTTTTCTGTGCTCAGTGTGATTGCTGGAATACTGATAACTGTGACTGTTCAGAAAAATAGCGGTAAACTTACTGTCACTTTTTTATGTAAAGAAGGTGTCCTGTGGAAAGTTTTTTAACTGactcacagttgaagtcagaattattagctcccctgaattattagccaccctgtttatttttccccccaatttctgtttaacggagagaagattttttaaacacatttcttaacataatagttttaataactcatttctaataactgatttattttgtctttgccatgatgacagtaaataatattttactagatatttttcaagacacttctatacagcttaaagtgacatttaaaggattaactaggttaattaggttaaccaggcaggttagggtaattaggcaagttattgtataatgatggtttgttctgtagactatcggaaaaaaaatatagcctaaaggggcgaataattttgaacTTATAATGGTGTTAGCTTTTATGctagcggaaataaaacaagtaagactttctccagaagaaaaatattatcagacatactgtgaaaatttccttgctcttatttttaaataaatttaaaaggggactaataattcaattGATGACTGTATAAAGGATTTCCACCAAATCACAGATGACCAAACAATCAgtttacatgaacaccaataCTCTAATCTGAATACAATTAGAACAATATTCTGATAAAAGCATGTAAACTGATTTTTTGATTACTTtgatatttatcaatatgtggatgtTTTGGGATTCTCTGAGGctatgtaaattaaaaatgttacatacAGTGTAAAATACAGTGTGAAAATTATTATCCAGAGTCTCTTAATACACATTTATAAACCAGCTCATGAGTAAAACATGATTGTTGTGACCTGGTTATGTTTGTTTATGTCAGGAAATTgcttttttacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatatatatatatatatatatatatatatatatatatatatatatatgtgtgtgtgtgtgggtgtgtgtgt
>TCONS_00051038
atgccagggccgattttttgccccagtccaacattttgttttttgtttttacatccaTGCTCTCTTTCTCTTGTAGCAGAGCGGTATGAAGTGTTGGGATCTGCAGGTCCTGTATTTGCATTTGCTGGTGAAGATGTGACTCTGCCCTGTTCAGTCAAACCCAACATCAGTGTTGTGGACATGAGAGTCGAGTGGTTTAGACTTGATCAGAAATACTCAGTAGTTCATCTCTATGAGGATCATGAAGACAGAAACACAGAGCAGATTCAGTCCTACAGAGGGAGAACTGAACTCAATCATCAACAACTACAAACAGGAAACGCATCACTCAGACTATCAGCAGTGAAAGTGTCTGATGAAGGACGCTATAAGTGTTTTATTCAGTCCAACTCAGTGTCTGATGATGCCACGATTAATTTTAAAGTTGAAgCTGTAGGAAGTCCTCCAATGATCACAGTAGATGGATTTGATCATTTAGGAGGGCTTCGTCTACAGTGTGAATCTGAAGGTTGGCATCCTGAACCTGATCTTGAGTGGCTGGACAGTGAAGGAGTCAGACTGAGTTCAGAAACTACAGagaaacacagaaacacagacagaTTCAGTGTGAAACACACCGTCACTGTTCATCAGAGAAACAGCAAGATTCACTGCAGAGTCAAAGTGAGACACCACATGCTGGAGACACTGATCAGCTCTACAAAACACAAGAAACTACAGCTTGATAACTGCAGAATGCAAAGTGGTGAGTTTGTCTTACCTAAAAGGGATAGATAa

Function

symbol description
zgc:162154 Predicted to enable signaling receptor binding activity. Predicted to be involved in T cell receptor signaling pathway and regulation of cytokine production. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Orthologous to several human genes including BTNL3 (butyrophilin like 3); BTNL8 (butyrophilin like 8); and BTN1A1 (butyrophilin subfamily 1 member A1).

GO:

id name namespace
GO:0001817 regulation of cytokine production biological_process
GO:0050776 regulation of immune response biological_process
GO:0050852 T cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-57 Predicted to enable signaling receptor binding activity. Predicted to be involved in T cell receptor signaling pathway and regulation of cytokine production. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Orthologous to several human genes including BTNL3 (butyrophilin like 3); BTNL8 (butyrophilin like 8); and BTN1A1 (butyrophilin subfamily 1 member A1).

Ensembl:

ensembl_id ENSDARG00000110702

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051036 False 1758 mRNA 0.36 6 9542168 9569261
TCONS_00051037 False 2680 mRNA 0.34 4 9542579 9569261
TCONS_00051038 True 777 mRNA 0.43 4 9564237 9571309

Neighbor

gene id symbol gene type direction distance location
XLOC_026120 zmp:0000000997 coding downstream 45315 9496077 ~ 9496853 (-)
XLOC_026119 FO904885.2 coding downstream 53818 9485208 ~ 9488350 (-)
XLOC_026118 FO904885.3 coding downstream 65413 9475575 ~ 9476755 (-)
XLOC_026117 FO904885.1 coding downstream 83723 9457762 ~ 9458445 (-)
XLOC_026116 rnps1 coding downstream 97419 9431501 ~ 9444749 (-)
XLOC_026122 crebbpb coding upstream 63468 9634777 ~ 9722603 (-)
XLOC_026123 NA coding upstream 152507 9723816 ~ 9727824 (-)
XLOC_026124 CR339059.1 coding upstream 166181 9737490 ~ 9738985 (-)
XLOC_026125 CR339059.3 coding upstream 173146 9744455 ~ 9752851 (-)
XLOC_026126 CR339059.4 coding upstream 182705 9754014 ~ 9761538 (-)
XLOC_026115 CR926128.3 non-coding downstream 510401 9031619 ~ 9031767 (-)
XLOC_026114 CR926128.2 non-coding downstream 517616 9024485 ~ 9024552 (-)
XLOC_026113 CR792416.1 non-coding downstream 607692 8933639 ~ 8934476 (-)
XLOC_026112 NA non-coding downstream 619372 8921127 ~ 8922796 (-)
XLOC_026127 NA non-coding upstream 324907 9896216 ~ 9899429 (-)
XLOC_026128 FP236320.1 non-coding upstream 342963 9914272 ~ 9914389 (-)

Expression


Co-expression Network