XLOC_026129


Basic Information

Item Value
gene id XLOC_026129
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 9984415 ~ 10014575 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052944
TTCTCGTCTTCACTTTTATCTCtgtctgctgaaaaaaaaagcACAGATTGCCGTGTCTCCGGAGGATAGTTGTAGTGTATTAAAGCGCTCGACGCTGCTTTACACACCATCTGCTTGAGCGGAAACAAGACGAGAGGAACAACACTCAATCCTTCAATGACGCTGAACTGTTCAGAGACACTCCGTGATGAACGCCGGCTGAAAGTTTTGACCTTTTATTGCGTTTTATTTTTAGCTGATGCATAAGCAGAAATCATCTCATTACTGGGACTGATGGAGACATGACAGAAAGCTTTGTTTGTGTTGCATATAAAGAGGGAAATAAATGAGATTATTGGTTTTTCCGTGTCTTACGCAGGTGCTTTTGACTTGTATGGAAATATCAGGACAAATTAAATTAGTCCTATAGTAGGTATATTAAAGTTGTCCATCACTGACGGCTAGGGTGGTCTTTATGCAGTTTTATAATTGATTATTAGATGGACTTTGGTGTAAATGAGCTGATATGGTTCTCGTGGGACACCTTTTCTTCAGGGGCCGTGCGGTAATGCAGGAGATTATGAGAAAGGGAGAATTCATGGATGGTTATGCAGGTCTTATGCTAGAGCTGTTCATTTTCTGATGGGACATTGTTTGAAGATGTATTCATTTTTATAagtgtttaaatattatttccttaTTCTCCGTATAGAGATTTGaatgattttaatatatttagtataggtatttttatataaaaaatacaaatcacaTTTATTGTACTTTGTTTgcgttttatttacttatttaaacaaGCCAACGCATCtgtttacactctcagaaaaaaaaaggtacaaaattgtaccttttagggtacaaatggcccgtcactggggtggtaccctaaagggtacaattttgtacctctgtttagaggtacaaaattgtaccttctacatttgtaccatttaagggacaattttgtaccccccAAGGAAGGTACGAAAATGTACCTTcttatattatatagcattttcagggtactgacccaggcattttgatcctttggtgactgc
>TCONS_00052945
CTGGCGCTCAGGCTGTGATGAAGCATTTCTCGTCTTCACTTTTATCTCtgtctgctgaaaaaaaaagcATTGCCGTGTCTCCGGAGGATAGTTGTAGTGTATTAAAGCGCTCGACGCTGCTTTACACACCATCTGCTTGAGCGGAAACAAGACGAGAGGAACAACACTCAATCCTTCAATGACGCTGAACTGTTCAGAGACACTCCGTGATGAACGCCGGCTGAAAGTTTTGACCTTTTATTGCGTTTTATTTTTAGCTGATGCATAAGCAGAAATCATCTCATTACTGGGACTGATGGAGACATGACAGAAAGCTTTGTTTGTGTTGCATATAAAGAGGGAAATAAATGAGATTATTGGTTTTTCCGTGTCTTACGCAGGTGCTTTTGACTTGTATGGAAATATCAGGACAAATTAAATTAGTCCTATAGTAGGTATATTAAAGTTGTCCATCACTGACGGCTAGGGTGGTCTTTATGCAGTTTTATAATTGATTATTAGATGGACTTTGGTGTAAATGAGCTGATATGGTTCTCGTGGGACACCTTTTCTTCAGGGGCCGTGCGGTAATGCAGGAGATTATGAGAAAGGGAGAATTCATGGATGGTTATGCAGGTCTTATGCTAGAGCTGTTCATTTTCTGATGGGACATTGTTTGAAGATGTATTCATTTTTATAagtgtttaaatattatttccttaTTCTCCGTATAGAGATTTGaatgattttaatatatttagtataggtatttttatataaaaaatacaaatcacaTTTATTGTACTTTGTTTgcgttttatttacttatttaaacaaGCCAACGCATCtgtttacactctcagaaaaaaaaaggtacaaaattgtaccttttagggtacaaatggcccgtcactggggtggtaccctaaagggtacaattttgtacctctgtttagaggtacaaaattgtaccttctacatttgtaccatttaagggacaattttgtaccccccAAGGAAGGTACGAAAATGTACCTTcttatattatatagcattttcagggtactgacccaggcattttgatcctttggtgactgc
>TCONS_00052946
GTTCATTTCTAAAACGGTCATTGGCTCAGTCTGTTTGAACTGTGAGCGCGTCAACTGAACCAACAGAATCGGCTCGTTTTGTGGTGCTTTTGGAAGATATTTAACTTCACAAAATGAACATAAAGTCATATGTAATTAACAACTGTCGGTTTTATGACAAGACGTGTCACACTGTTGCGATGTGGTGTATTTTTGGCCTCGGAAGTTCGCTGAGATGAAACAACGcacagctggaccatcatcataaaATCACAACCAAAGGCAAACAAGACCGCAACGTATTTCCAGCATCTCTTCatcagaggaagaggaggagggacATACGACTTCATTGAGGAGATTACAGCgatcgcgcgcacacacacaacacaccacTATTGCCGTGTCTCCGGAGGATAGTTGTAGTGTATTAAAGCGCTCGACGCTGCTTTACACACCATCTGCTTGAGCGGAAACAAGACGAGAGGAACAACACTCAATCCTTCAATGACGCTGAACTGTTCAGAGACACTCCGTGATGAACGCCGGCTGAAAGTTTTGACCTTTTATTGCGTTTTATTTTTAGCTGATGCATAAGCAGAAATCATCTCATTACTGGGACTGATGGAGACATGACAGAAAGCTTTGTTTGTGTTGCATATAAAGAGGGAAATAAATGAGATTATTGGTTTTTCCGTGTCTTACGCAGGTGCTTTTGACTTGTATGGAAATATCAGGACAAATTAAATTAGTCCTATAGTAGGTATATTAAAGTTGTCCATCACTGACGGCTAGGGTGGTCTTTATGCAGTTTTATAATTGATTATTAGATGGACTTTGGTGTAAATGAGCTGATATGGTTCTCGTGGGACACCTTTTCTTCAGGGGCCGTGCGGTAATGCAGGAGATTATGAGAAAGGGAGAATTCATGGATGGTTATGCAGGTCTTATGCTAGAGCTGTTCATTTTCTGATGGGACATTGTTTGAAGATGTATTCATTTTTATAagtgtttaaatattatttccttaTTCTCCGTATAGAGATTTGaatgattttaatatatttagtataggtatttttatataaaaaatacaaatcacaTTTATTGTACTTTGTTTgcgttttatttacttatttaaacaaGCCAACGCATCtgtttacactctcagaaaaaaaaaggtacaaaattgtaccttttagggtacaaatggcccgtcactggggtggtaccctaaagggtacaattttgtacctctgtttagaggtacaaaattgtaccttctacatttgtaccatttaagggacaattttgtaccccccAAGGAAGGTACGAAAATGTACCTTcttatattatatagcattttcagggtactgacccaggcattttgatcctttggtgactgc
>TCONS_00052947
CTGTGAAATAAATGGTCATAACACAAATCGAATAGTACTTTAATCCGACCAGTTAATCAATAATAGGCCTACTGAGATGAATTTGTGAATGATTCAAATCCACAGCGCGCATATCAGTGCAATTCGACTCATGAACAAATGATTCTTTTGAATCAGTTCTCGTGATGAATCGTTCATTTCTAAAACGGTCATTGGCTCAGTCTGTTTGAACTGTGAGCGCGTCAACTGAACCAACAGAATCGGCTCGTTTTGTGGTGCTTTTGGAAGATATTTAACTTCACAAAATGAACATAAAGTCATATGTAATTAACAACTGTCGGTTTTATGACAAGACGTGTCACACTGTTGCGATGTGGTGTATTTTTGGCCTCGGAAGTTCGCTGAGATGAAACAACGcacagctggaccatcatcataaaATCACAACCAAAGGCAAACAAGACCGCAACGTATTTCCAGCATCTCTTCatcagaggaagaggaggagggacATACGACTTCATTGAGGAGATTACAGCgatcgcgcgcacacacacaacacacactACAGATTGCCGTGTCTCCGGAGGATAGTTGTAGTGTATTAAAGCGCTCGACGCTGCTTTACACACCATCTGCTTGAGCGGAAACAAGACGAGAGGAACAACACTCAATCCTTCAATGACGCTGAACTGTTCAGAGACACTCCGTGATGAACGCCGGCTGAAAGTTTTGACCTTTTATTGCGTTTTATTTTTAGCTGATGCATAAGCAGAAATCATCTCATTACTGGGACTGATGGAGACATGACAGAAAGCTTTGTTTGTGTTGCATATAAAGAGGGAAATAAATGAGATTATTGGTTTTTCCGTGTCTTACGCAGGTGCTTTTGACTTGTATGGAAATATCAGGACAAATTAAATTAGTCCTATAGTAGGTATATTAAAGTTGTCCATCACTGACGGCTAGGGTGGTCTTTATGCAGTTTTATAATTGATTATTAGATGGACTTTGGTGTAAATGAGCTGATATGGTTCTCGTGGGACACCTTTTCTTCAGGGGCCGTGCGGTAATGCAGGAGATTATGAGAAAGGGAGAATTCATGGATGGTTATGCAGGTCTTATGCTAGAGCTGTTCATTTTCTGATGGGACATTGTTTGAAGATGTATTCATTTTTATAagtgtttaaatattatttccttaTTCTCCGTATAGAGATTTGaatgattttaatatatttagtataggtatttttatataaaaaatacaaatcacaTTTATTGTACTTTGTTTgcgttttatttacttatttaaacaaGCCAACGCATCtgtttacactctcagaaaaaaaaaggtacaaaattgtaccttttagggtacaaatggcccgtcactggggtggtaccctaaagggtacaattttgtacctctgtttagaggtacaaaattgtaccttctacatttgtaccatttaagggacaattttgtaccccccAAGGAAGGTACGAAAATGTACCTTcttatattatatagcattttcagggtactgacccaggcattttgatcctttggtgactgc
>TCONS_00051044
CTGTGAAATAAATGGTCATAACACAAATCGAATAGTACTTTAATCCGACCAGTTAATCAATAATAGGCCTACTGAGATGAATTTGTGAATGATTCAAATCCACAGCGCGCATATCAGTGCAATTCGACTCATGAACAAATGATTCTTTTGAATCAGTTCTCGTGATGAATCGTTCATTTCTAAAACGGTCATTGGCTCAGTCTGTTTGAACTGTGAGCGCGTCAACTGAACCAACAGAATCGGCTCGTTTTGTGGTGCTTTTGGAAGATATTTAACTTCACAAAATGAACATAAAGTCATATGTAATTAACAACTGTCGGTTTTATGACAAGACGTGTCACACTGTTGCGATGTGGTGTATTTTTGGCCTCGGAAGTTCGCTGAGATGAAACAACGcacagctggaccatcatcataaaATCACAACCAAAGGCAAACAAGACCGCAACGTATTTCCAGCATCTCTTCatcagaggaagaggaggagggacATACGACTTCATTGAGGAGATTACAGCgatcgcgcgcacacacacaacacaccacTACAGATTGCCGTGTCTCCGGAGGATAGTTGTAGTGTATTAAAGCGCTCGACGCTGCTTTACACACCATCTGCTTGAGCGGAAACAAGACGAGAGGAACAACACTCAATCCTTCAATGACGCTGAACTGTTCAGAGACACTCCGTGATGAACGCCGGCTGAAAGTTTTGACCTTTTATTGCGTTTTATTTTTAGCTGATGCATAAGCAGAAATCATCTCATTACTGGGACTGATGGAGACATGACAGAAAGCTTTGTTTGTGTTGCATATAAAGAGGGAAATAAATGAGATTATTGGTTTTTCCGTGTCTTACGCAGGTGCTTTTGACTTGTATGGAAATATCAGGACAAATTAAATTAGTCCTATAGTAGGTATATTAAAGTTGTCCATCACTGACGGCTAGGGTGGTCTTTATGCAGTTTTATAATTGATTATTAGATGGACTTTGGTGTAAATGAGCTGATATGGTTCTCGTGGGACACCTTTTCTTCAGGGGCCGTGCGGTAATGCAGGAGATTATGAGAAAGGGAGAATTCATGGATGGTTATGCAGGTCTTATGCTAGAGCTGTTCATTTTCTGATGGGACATTGTTTGAAGATGTATTCATTTTTATAagtgtttaaatattatttccttaTTCTCCGTATAGAGATTTGaatgattttaatatatttagtataggtatttttatataaaaaatacaaatcacaTTTATTGTACTTTGTTTgcgttttatttacttatttaaacaaGCCAACGCATCtgtttacactctcagaaaaaaaaaggtacaaaattgtaccttttagggtacaaatggcccgtcactggggtggtaccctaaagggtacaattttgtacctctgtttagaggtacaaaattgtaccttctacatttgtaccatttaagggacaattttgtaccccccAAGGAAGGTACGAAAATGTACCTTcttatattatatagcattttcagggtactgacccaggcattttgatcctttggtgactgc

Function

GO:

id name namespace
GO:0032183 SUMO binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052944 False 1055 lncRNA 0.37 2 9984415 9985599
TCONS_00052945 False 1077 lncRNA 0.38 2 9984415 9985625
TCONS_00052946 False 1385 lncRNA 0.39 3 9984415 10014404
TCONS_00052947 False 1559 lncRNA 0.39 4 9984415 10014575
TCONS_00051044 True 1560 lncRNA 0.39 3 9984415 10014575

Neighbor

gene id symbol gene type direction distance location
XLOC_026128 FP236320.1 coding downstream 70026 9914272 ~ 9914389 (-)
XLOC_026127 NA coding downstream 84986 9896216 ~ 9899429 (-)
XLOC_026126 CR339059.4 coding downstream 222877 9754014 ~ 9761538 (-)
XLOC_026125 CR339059.3 coding downstream 231564 9744455 ~ 9752851 (-)
XLOC_026124 CR339059.1 coding downstream 245430 9737490 ~ 9738985 (-)
XLOC_026130 NA coding upstream 3782 10018357 ~ 10025630 (-)
XLOC_026131 NA coding upstream 46397 10060972 ~ 10134755 (-)
XLOC_026132 NA coding upstream 47613 10062188 ~ 10137141 (-)
XLOC_026133 BX539325.2 coding upstream 164616 10179191 ~ 10186353 (-)
XLOC_026134 BX539325.3 coding upstream 172458 10187033 ~ 10187151 (-)
XLOC_026123 NA non-coding downstream 256591 9723816 ~ 9727824 (-)

Expression


Co-expression Network