G693517 (vipas39)


Basic Information

Item Value
gene id G693517
gene name vipas39
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 28873318 ~ 28876113 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU789438
CTCGATGATAATCTGCCTTTCCAGGAGTGTGTAGTGGTCTTGAACGTGAGTGGCATCGTCTGGTGAGAAGGGGAAACTGAGGCAGTTCTTCAGAAAGTCCCTCCTCTTGTTCTCGTCTCTGACATTGAGGTGATCTCTGTACTGCATGAGCGCCatgtcttctgttctgtccatggACTTGAAAAGCTCCACCAAAAGCTTCTGTTCTCCTATTTCCTTCAGGTAGTGGATATAATGCCTGAGAGCTATTTCTCTTGTTATCAACTCCCGGAAGAGAATCTCTGCACAGAAACACAGTGAACTGTCATTATTTGCAGAATATTTGCCATGTGCACTTAACTTTTGCAACATCCAAAGTTTGCAACTGTTATTGTTCTAAAggaataatatatgccatttagcagatgcttttgtcagcatgcatacatacattttCAACACCTG

Function

symbol description
vipas39 Acts upstream of or within hepaticobiliary system development. Predicted to be located in early endosome; late endosome; and recycling endosome. Predicted to be active in cytoplasm. Is expressed in intestine and liver. Human ortholog(s) of this gene implicated in arthrogryposis, renal dysfunction, and cholestasis 2. Orthologous to human VIPAS39 (VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog).

NR:

description
spermatogenesis-defective protein 39 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU789438 True 444 lncRNA 0.43 4 28873318 28876113

Neighbor

gene id symbol gene type direction distance location
ahsa1a LOC106571686 coding downstream 13207 28850874 ~ 28860111 (-)
LOC110529750 LOC106571688 coding downstream 28491 28822703 ~ 28844827 (-)
si:dkey-177p2.18 LOC106571734 coding downstream 68961 28776437 ~ 28804357 (-)
LOC110529748 NA coding downstream 106645 28736794 ~ 28766673 (-)
chga chga coding downstream 145407 28704849 ~ 28727911 (-)
LOC110529757 LOC106571682 coding upstream 114144 28990257 ~ 29005160 (-)
lcb2 lcb2 coding upstream 149170 29025283 ~ 29029716 (-)
LOC110529223 snw1 coding upstream 170310 29046423 ~ 29096035 (-)
LOC118965622 NA coding upstream 326273 29202386 ~ 29203480 (-)
LOC118965623 NA coding upstream 328037 29204150 ~ 29208928 (-)
G693488 NA non-coding downstream 87802 28785109 ~ 28785516 (-)
G693471 NA non-coding downstream 103106 28770001 ~ 28770212 (-)
G693468 NA non-coding downstream 105162 28767751 ~ 28768156 (-)
G693390 itpk1 non-coding downstream 207384 28634023 ~ 28665934 (-)
G693085 NA non-coding downstream 407480 28465620 ~ 28465838 (-)
G693527 NA non-coding upstream 6190 28882303 ~ 28882931 (-)
G693528 NA non-coding upstream 7511 28883624 ~ 28884010 (-)
G693530 NA non-coding upstream 10321 28886434 ~ 28886754 (-)
G693652 NA non-coding upstream 65749 28941862 ~ 28942115 (-)
G693653 NA non-coding upstream 66147 28942260 ~ 28943003 (-)
G693383 btbd7 other downstream 278887 28593341 ~ 28594431 (-)
si:dkey-85n7.8 NA other downstream 391420 28478817 ~ 28481944 (-)
G692859 NA other downstream 757270 28115736 ~ 28116048 (-)
G691747 NA other downstream 1557383 27315568 ~ 27315935 (-)
G691447 LOC106571509 other downstream 2005240 26864210 ~ 26868078 (-)
G693665 NA other upstream 82282 28958395 ~ 28958832 (-)
G694858 LOC105017690 other upstream 1125650 30001763 ~ 30062168 (-)
G696068 NA other upstream 1970789 30846902 ~ 30847209 (-)
G696073 NA other upstream 1978994 30855107 ~ 30855407 (-)
G696499 NA other upstream 2601241 31477354 ~ 31478027 (-)

Expression


Co-expression Network