XLOC_026138 (pctp)


Basic Information

Item Value
gene id XLOC_026138
gene name pctp
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 10407458 ~ 10425313 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051049
aaattacagattttttaaactgtgcagagttgtagctgctttactgggcctattACGCTATactatatttcaatactgctcattttagtggtacttggagagacagtttttttctgaggaggtacttgatgaaaaaagtttgagaaccactgatgatTTGTTCCTGTGTAGAATATACTTGTTATTCCAGATAGGCGTATTGTGTTGtgtaaaattgtgtgtgtgcgctAGTTTCCAAGACAGCAAGACTTGTTGGTGGAATGCTGAAAGCTTCACTGGGGAGTTTAGGCAAGTCAAAGTCACATCTGAGAAGAAATCGGATGCCACCCAGTATGTTAAACAAGGCACAAGGAACAGTGTACCAAAAACTCTCAGTAATACTCAAAAACCTTTGAAGCCAtttaagttttaataaataatacgcATGGCGAGCGACCAGCTGACACGTGACGTCACCACGCCAACTTCCGCGTTCATGTGTCAGACTCGGTGGCGGACGGAAGAGAGCAGAAATCATGGCTCTTGCATTCAGTGATGAGGAGTTTCAGCAGGCGTGGACGGAGCTGGACGAGCCGCAGCTGGACGGAGGATGGGAGTTTTTCACCGAGACCATGAACGTCAAGATCTACCGACTCTACAACAAGGAGACGGGTTTGTACGAGTATAAAGTGTTTGGTTCTCTGTCCGGCTGTTCTCCAGAGCTCTGCGCCGAGGTTTACATGGACCTCAACTACAGGAGACAGTGGGACTCCTATGTCAAAGAGCTGCATGAGAAAGACTACAATGATCAGAAGGCCATATACTGGGAGGTGAAATATCCAATGCCGCTGTCCAACAGGGATTATGTGTATGTGCGCGAGCGAAGGGATCTGGACGTGTCCGGACGGAAGATCTGTGTGGTTTTAGCCAAGAGCACGTCTGTGTCTCAGTGTCCGGAGAAAAGAGGAGTGATCCGAGTCAAAGACTACAAACAGAGCCTGGCCATAGAGAGTGACGACTCCGGAGGAACCAAAATGTTTATGAACTACTTTGATAATCCTGGAGGAATGATCCCGACGTGGCTGGTCAACTGGGCAGCAAAGACGGGCGTTCCTTCATTCCTCACCGACATGAAGAAAGCCTGCAGCAACTACAGCGACTACTGCAAAAACAGCAAGTGA

Function

symbol description
pctp Predicted to enable phosphatidylcholine binding activity and phosphatidylcholine transporter activity. Acts upstream of or within digestive tract development; exocrine pancreas development; and liver development. Orthologous to human PCTP (phosphatidylcholine transfer protein).

GO:

id name namespace
GO:0031017 exocrine pancreas development biological_process
GO:0048565 digestive tract development biological_process
GO:0001889 liver development biological_process
GO:0008525 phosphatidylcholine transporter activity molecular_function
GO:0008289 lipid binding molecular_function
GO:0031210 phosphatidylcholine binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-182 Predicted to enable phosphatidylcholine binding activity and phosphatidylcholine transporter activity. Acts upstream of or within digestive tract development; exocrine pancreas development; and liver development. Orthologous to human PCTP (phosphatidylcholine transfer protein).

Ensembl:

ensembl_id ENSDARG00000073985

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051049 True 1160 mRNA 0.47 6 10407458 10425313

Neighbor

gene id symbol gene type direction distance location
XLOC_026136 NA coding downstream 13630 10252159 ~ 10393828 (-)
XLOC_026137 nog1 coding downstream 95206 10310090 ~ 10312252 (-)
XLOC_026135 BX539325.1 coding downstream 194238 10213098 ~ 10213220 (-)
XLOC_026134 BX539325.3 coding downstream 220307 10187033 ~ 10187151 (-)
XLOC_026133 BX539325.2 coding downstream 221105 10179191 ~ 10186353 (-)
XLOC_026139 NA coding upstream 98137 10523450 ~ 10529896 (-)
XLOC_026140 elac2 coding upstream 110644 10535957 ~ 10582384 (-)
XLOC_026141 map2k4a coding upstream 167284 10592597 ~ 10634532 (-)
XLOC_026142 si:ch73-1f23.1 coding upstream 226762 10652075 ~ 10677952 (-)
XLOC_026143 NA coding upstream 259009 10684322 ~ 10711294 (-)
XLOC_026132 NA non-coding downstream 270317 10062188 ~ 10137141 (-)
XLOC_026144 NA non-coding upstream 267095 10692408 ~ 10693768 (-)
XLOC_026150 NA non-coding upstream 517751 10943064 ~ 10994386 (-)
XLOC_026151 NA non-coding upstream 529396 10954709 ~ 11000449 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000173_00229785_00241356 PCTP coding CI01000173 null 228596 ~ 241417 (-)