XLOC_026139


Basic Information

Item Value
gene id XLOC_026139
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 10523450 ~ 10529896 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052438
TTATGTAAAGGTTACACTTTATCGTGCTGTACACgctaattgtttattcatttaattccAGCAGTCGTTTGGATGCGTTTCCCTCCTCAGCCACTGGAGGCCGCTCTTTCCTCAGGAATTACACTTCAGATTTCTCACGTATTCCTGAACGAGCCAATTATCGACCAACTAAATCCTCGACGAAGCCTGCTCGTTGCCTATACATTATTTAGTCGAGAAACTGCTCAACAGGAGAAGGTTTGTGACTTGTTTGAGATTGGAGCAATGTTTCCTTGTAAGCCCACCTCTGTTATTAACAGGACAGATGTCACAGTGGTCCAGGAGAGAATTCATCTCGCCTGCTTAGTGTGTGTAACAGATGCTTTTATTTACAGCTACCGAGAAGACAATCCCACTGGACAAACCTTAAAGATTCTCCTGAAGAAAAGCTGGAAAAATAGACTCCACCGTTTCCCTTTAAACTCCTGGTCGAACATCAGGAACTTTTTGAAGCTACATAAACAACATTTTCGGAAAAGAGgagGACACAACCCCATCATCTGTCTCTGGAGTGATCTGCATGTTCATGTAAAAGCATATGTGTGTATCTCCCTGATCTGATACAGCTCTAAAgcaggtgcgtgtgtgtgtgtttttttcctcaGCGTCTCTCTTTACAGTAGATATTTGTGGATGTGGGTTTGGCCCCTGAAGGGCTcctttctaaattcagtttcatGAAGCTCAGCTCTCCTCTTCTCTGCTTCTCATCTCAGATTTTGCTCTTTCACCACTCACAAGACTCTCATGTGTTTCGCTTCAATGTAATGTTGAGTATTTCAGTTCTCAGAAAAAACCTGAAACAGACAGAGCTTAGTCACTCATCATGCAAGCGTTAAAGTCCGCATGAAATCAAACCTAGCCATAaagattttgttagctcacattgc
>TCONS_00052439
TTATGTAAAGGTTACACTTTATCGTGCTGTACACgctaattgtttattcatttaattccAGCAGTCGTTTGGATGCGTTTCCCTCCTCAGCCACTGGAGGCCGCTCTTTCCTCAGGAATTACACTTCAGATTTCTCACGTATTCCTGAACGAGCCAATTATCGACCAACTAAATCCTCGACGAAGCCTGCTCGTTGCCTATACATTATTTAGTCGAGAAACTGCTCAACAGGAGAAGCTACCGAGAAGACAATCCCACTGGACAAACCTTAAAGATTCTCCTGAAGAAAAGCTGGAAAAATAGACTCCACCGTTTCCCTTTAAACTCCTGGTCGAACATCAGGAACTTTTTGAAGCTACATAAACAACATTTTCGGAAAAGAGGTATATCTGTGTACACAACAGTAATACAAATGCAGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052438 False 929 lncRNA 0.42 2 10523450 10529896
TCONS_00052439 True 420 lncRNA 0.42 2 10529340 10529896

Neighbor

gene id symbol gene type direction distance location
XLOC_026138 pctp coding downstream 98137 10407458 ~ 10425313 (-)
XLOC_026136 NA coding downstream 129622 10252159 ~ 10393828 (-)
XLOC_026137 nog1 coding downstream 211198 10310090 ~ 10312252 (-)
XLOC_026135 BX539325.1 coding downstream 310230 10213098 ~ 10213220 (-)
XLOC_026134 BX539325.3 coding downstream 336299 10187033 ~ 10187151 (-)
XLOC_026140 elac2 coding upstream 6061 10535957 ~ 10582384 (-)
XLOC_026141 map2k4a coding upstream 62701 10592597 ~ 10634532 (-)
XLOC_026142 si:ch73-1f23.1 coding upstream 122179 10652075 ~ 10677952 (-)
XLOC_026143 NA coding upstream 154426 10684322 ~ 10711294 (-)
XLOC_026144 NA coding upstream 162512 10692408 ~ 10693768 (-)
XLOC_026133 BX539325.2 non-coding downstream 337097 10179191 ~ 10186353 (-)
XLOC_026132 NA non-coding downstream 386309 10062188 ~ 10137141 (-)
XLOC_026150 NA non-coding upstream 413168 10943064 ~ 10994386 (-)
XLOC_026151 NA non-coding upstream 424813 10954709 ~ 11000449 (-)
XLOC_026153 NA non-coding upstream 488573 11018469 ~ 11049191 (-)

Expression


Co-expression Network