G695823 (LOC106571660)


Basic Information

Item Value
gene id G695823
gene name LOC106571660
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31050451 ~ 31051166 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU792034
GCTGGTGACATCCAGGTTCACCCCATACTGAACGTCATCCTGAAAATATCAATAGGAAAAACCTTATTTGAGCAACAAAAATGACACTAAACACAGAAGATGTGTAGCTAGTCGTGACACCTTACCCGTCTTAAAATGCGATCAAACTCTGCTGTGGAGAACAGTCCCGTATAATAGTCTGGATTCTGACGTTTGATCAAAACTGGCTTCTTTTCCCATGCATCTCTGAAGAAACTCTTGGAGGGAATTGGGTGGATGAGCCACTGGAAAAGTTTGCTGGCTCTCACCCTGCTGTTGCTGACTTTAGCCAGGTCACTCAGCAGAGCATCTAGTGCCACTCCGCTAATCTCTCCACACTGTACCCCCTCTGCCAgtctctccaccttctcc

Function

NR:

description
ribosomal oxygenase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU792034 True 390 lncRNA 0.47 3 31050451 31051166

Neighbor

gene id symbol gene type direction distance location
ndufb1 NA coding upstream 3030 31044027 ~ 31047423 (+)
LOC110529772 LOC106571664 coding upstream 172256 30809489 ~ 30878195 (+)
LOC118965506 NA coding upstream 384993 30655621 ~ 30665458 (+)
LOC110529770 LOC106571673 coding upstream 786967 30251466 ~ 30263484 (+)
LOC110529768 LOC106571670 coding upstream 807151 30227409 ~ 30243300 (+)
LOC110529776 LOC106571659 coding downstream 4044 31055210 ~ 31097963 (+)
LOC110529228 LOC106571658 coding downstream 78344 31129510 ~ 31140471 (+)
LOC110531085 NA coding downstream 94368 31145534 ~ 31146912 (+)
si:dkey-174m14.3 LOC106571655 coding downstream 106706 31157872 ~ 31204182 (+)
rad51b rad51b coding downstream 168989 31220155 ~ 31307462 (+)
G695809 cpsf2 non-coding upstream 17669 31031017 ~ 31032782 (+)
G695796 NA non-coding upstream 38667 31006237 ~ 31011784 (+)
G695757 NA non-coding upstream 105648 30944582 ~ 30944803 (+)
G695756 NA non-coding upstream 105921 30944209 ~ 30944530 (+)
G695826 NA non-coding downstream 3065 31054231 ~ 31054493 (+)
G695838 NA non-coding downstream 12621 31063787 ~ 31072533 (+)
G695828 NA non-coding downstream 50203 31101369 ~ 31101794 (+)
G695829 NA non-coding downstream 50862 31102028 ~ 31102353 (+)
G695887 NA non-coding downstream 86480 31137646 ~ 31185372 (+)
G694036 NA other upstream 1257704 29790997 ~ 29792747 (+)
cdca4 LOC106571684 other upstream 2112178 28930668 ~ 28939888 (+)
G693207 NA other upstream 2344699 28704850 ~ 28705752 (+)
btbd7 btbd7 other upstream 2492078 28495104 ~ 28605625 (+)
G692424 NA other upstream 2980223 28069900 ~ 28070228 (+)
G699605 NA other downstream 3076427 34127593 ~ 34128301 (+)
LOC110529856 LOC106571576 other downstream 4403682 35454437 ~ 35462086 (+)
G700685 NA other downstream 4561998 35613164 ~ 35614666 (+)
G700864 NA other downstream 4852883 35904049 ~ 35904698 (+)
G702415 NA other downstream 5649272 36700438 ~ 36700739 (+)

Expression


Co-expression Network