G696416


Basic Information

Item Value
gene id G696416
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31486790 ~ 31560546 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU792685
AAAAAGATTCCTCCAAAAGATTTGAGGTCAAGTTTTAAAATGAGTTTTTATTTTGGTTTTTAGTGTAGAAACCCATCCCTTCTTCCTGTGTGCTATAAAACTATTTGAATGCGATCTAAATGGTCAGTCCAGGATCCACCTTACCAGTATGGAGTCAGTTCATCAGCTCTTTCAGTCTTATAAAAATCGGGCTTGGTATTTTACTGGGAGCTGGATGGAGCTGCAAACTCTgagtcaatctctctctctctctctctctcttccacagcACATGAAGGTGGGATCAGTGATAAACTCTCACGCTATAAACTAGTGATCACAAAAGCACAAACATGGACAGAACAGTCAAATGAAAAAGCACAAGTCTATACACCACAACAGCTATTAAAAGTCTTAGTCGCCATCATCTTTTTAGATATTCCACAGTGGTTGTTTTCAAATGGTGTGCTCATaggatgtagtgtgtgtgtgtgtgtgtgtgtgggctgtgtgtATGTACAATTGTGACAATAGATCTTGAGCAAATACTTGAAAGTTCTTGTCCCAATGGTCCACCATtgtagaaaaataaataaataatttaaaaaagaaaaCTAATTTGTCAAAATGTTGTTGAGGTCATTTTAGCTTCTGTTGTTCATTCAgaagtattttgttgttgttgtctgtaaatgttgttgtttattcctaGATCCTGGTCTTCCTCCAGCCATGGGGTTAGTTAGTAAAGGTCAATGTGGGCAGGGTCTGTACAGGTGTGGGTTGTCCCAGGGTAGGTGTGGTCCTCTATGCTCCAGTGCGATTGTGAGGTGGGCGTGGTCAGATGATGGGTGTGACTTGGGCGGAGTCACGCTTTCATTGGACCACGCGGCAGGATGGAATTTTCCCTGAGCCAACCACGGAGGC
>TU792686
AAAAAGATTCCTCCAAAAGATTTGAGGTCAAGTTTTAAAATGAGTTTTTATTTTGGTTTTTAGTGTAGAAACCCATCCCTTCTTCCTGTGTGCTATAAAACTATTTGAATGCGATCTAAATGGTCAGTCCAGGATCCACCTTACCAGTATGGAGTCAGTTCATCAGCTCTTTCAGTCTTATAAAAATCGGGCTTGGTATTTTACTGGGAGCTGGATGGAGCTGCAAACTCTgagtcaatctctctctctctctctctctcttccacagcACATGAAGGTGGGATCAGTGATAAACTCTCACGCTATAAACTAGTGATCACAAAAGCACAAACATGGACAGAACAGTCAAATGAAAAAGCACAAGTCTATACACCACAACAGCTATTAAAAGTCTTAGTCGCCATCATCTTTTTAGATATTCCACAGTGGTTGTTTTCAAATGGTGTGCTCATaggatgtagtgtgtgtgtgtgtgtgtgtgtgggctgtgtgtATGTACAATTGTGACAATAGATCTTGAGCAAATACTTGAAAGTTCTTGTCCCAATGGTCCACCATtgtagaaaaataaataaataatttaaaaaagaaaaCTAATTTGTCAAAATGTTGTTGAGGTCATTTTAGCTTCTGTTGTTCATTCAgaagtattttgttgttgttgtctgtaaatgttgttgtttattcctaGATCCTGGTCTTCCTCCAGCCATGGGGTTAGTTAGTAAAGGTCAATGTGGGCAGGGTCTGTACAGGTGTGGGTTGTCCCAGGGTAGGTGTGGTCCTCTATGCTCCAGTGCGATTGTGAGGTGGGCGTGGTCAGATGATGGGTTCTGGTGTGATTAATGCTGCTTGGGATTAAACCGAGCACTCATTACAGTACCTTGTCCATCAGACCTTCAAAGTCCAGTAATGTTCCACATCGTGTTATAAGCATAGCTTGATGTACTAAAGCACCCACAACAATCTAGCGACAAGGTCTTTCCATCACACTGATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU792685 False 906 lncRNA 0.42 2 31486790 31487759
TU792686 True 999 lncRNA 0.40 3 31486790 31560546

Neighbor

gene id symbol gene type direction distance location
stxbp6l LOC106571649 coding upstream 84226 31394194 ~ 31402564 (+)
ddhd1b LOC106571651 coding upstream 93716 31381107 ~ 31393074 (+)
psmc6 prs10 coding upstream 110202 31368752 ~ 31376588 (+)
LOC110529782 LOC106571730 coding upstream 142925 31339232 ~ 31343865 (+)
rad51b rad51b coding upstream 179328 31220155 ~ 31307462 (+)
LOC110529794 LOC106608176 coding downstream 390546 31951092 ~ 32110879 (+)
LOC118965508 NA coding downstream 574650 32135196 ~ 32141382 (+)
LOC110529798 LOC106571640 coding downstream 592155 32152701 ~ 32156250 (+)
LOC110529799 LOC106571639 coding downstream 602775 32163321 ~ 32166068 (+)
LOC110529801 LOC106571636 coding downstream 611666 32172212 ~ 32193704 (+)
G696427 NA non-coding upstream 2894 31483657 ~ 31483896 (+)
G696423 NA non-coding upstream 7888 31478666 ~ 31478902 (+)
G696000 NA non-coding upstream 126185 31360356 ~ 31360605 (+)
G695999 NA non-coding upstream 127248 31359155 ~ 31359542 (+)
G695995 NA non-coding upstream 135567 31350690 ~ 31351223 (+)
G696552 NA non-coding downstream 20810 31581356 ~ 31581565 (+)
G696563 NA non-coding downstream 28523 31589069 ~ 31589536 (+)
G696591 NA non-coding downstream 49633 31610179 ~ 31610397 (+)
G696600 NA non-coding downstream 54740 31615286 ~ 31615534 (+)
G696622 NA non-coding downstream 67057 31627603 ~ 31627980 (+)
G694036 NA other upstream 1694043 29790997 ~ 29792747 (+)
cdca4 LOC106571684 other upstream 2548517 28930668 ~ 28939888 (+)
G693207 NA other upstream 2781038 28704850 ~ 28705752 (+)
btbd7 btbd7 other upstream 2928417 28495104 ~ 28605625 (+)
G692424 NA other upstream 3416562 28069900 ~ 28070228 (+)
G699605 NA other downstream 2567047 34127593 ~ 34128301 (+)
LOC110529856 LOC106571576 other downstream 3894302 35454437 ~ 35462086 (+)
G700685 NA other downstream 4052618 35613164 ~ 35614666 (+)
G700864 NA other downstream 4343503 35904049 ~ 35904698 (+)
G702415 NA other downstream 5139892 36700438 ~ 36700739 (+)

Expression


Co-expression Network