G697196


Basic Information

Item Value
gene id G697196
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32126449 ~ 32131747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU793493
ACTGGGTTTATTTTCGTGTCCGTACACATTACATTAGCAGACAATacacagctagctaactaacaacaTGCTTCATGATCAATAGATGAATATAGAAGTTCAGTAACCTTATTATACAGTGTCATTAATTGCATAATATAGCTACAATACACAGGTAGGAAACGTTCGCTAACCAACTAATCGAAATAATTTCTGCGTCCTCACAATAACAACGCGACGTGCTAGCTGTTAGCTGAATGCAGACAATTTGCTGAACCATAGTTTGATAGCTCTTACGCTAGCATCTTGAAGTTACATTAGAACAAACCACGTTTCATTTTATCAGTATCATGGAAGGATTATATTTAGTAAAAGCTCAATTGCGACTGAAAACATTGATAATTCCCTGCTGCTTGCTTGCATAAACTTTAGCTTTTTATTTTTCTAAAGTATGGGTATCAACGTGGGTCGCGACCTGTCAGAGTAACTTGATAATTATTTCATGaattactggaattgatttggccaagtgcaaCTGCGCTCTCTGTTCGGTGCGCTCTCTGCTTAGCAGCAGATGTCAGTGTGCTTCGCGGTTTACCGGATATTTTTCTGCAGTTTTCTTGAAGATCACTCTGCGACACACATTGACTTGTCATTTCAACTCGCCATCACTCACTGCTGTCATCAAATGGATTCATGCTAGCCACAAGTTCTGACTGAACTCAGTTGTCATGAAACGCAAATACAGcgatgagtttctctctctttcatacaaactttgagaaaaaacgaggagcgcccacaatgtgttttgtgcGGGGAAGTGCTTAGTAATGAGTCCTTCAAAacgaacaaattaataaaacgaCACATCCTGGCCAAACATCCACAGGATGATCGTAAACCCagggagttctttcagaacagggcagaatgctccaggaaacagtgcttcgacAGTGGAAAAGGAAGTCAGCTAGCAGggcattgttgtcattttataacGGGTGATGAGCAGAAATAAGGGTGTACTAACTCTCATAGTAGTAGATGTGAatttctctttcaaacaatccctTGGCCTTATACACAGATAATAATTAACATTAACCAAAGCAAACTACCTAGCTTAGTGCAACCCTTAGAAACAGCACagatgaagatttttttttttaaagatcaggcctactgtacaccttactgtagaaatgactgTTGAAAActagtctaggttggaactgttgctgttaaaatactcTGAACTGGAATAACATAATTTAAGCAAGATGCTTTttgaggcaaacacacacacagttctgggttgctccTCTACagcaggaagtggtctcctgGCTGACTGAGgaagcagtagatgttctgatccagtttggcaccacatacctaTGCGAGTCAGGGTTCTCAACTCTGACATAGTTACAAAACAAGTACAGAAACAGTGTCAATGCTGAGTATGACCTGGGTGTTGTACTGTCAGACACTGAGCCCAGAATAGACATGCTTGGTGAAAACTTTAACCAGCCACACACCTCtcattaggactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtatgtgtgtgtgtgttctggtctacatctgtgtgatgtgatcaatcagttttccagttcagaataaaaaatatgtattgtaattcaacagcaacagttccaacctagactttcTTTCAACAATAATttatacagtaagatgtacagtaggcctgatcatttttcatctgtactgttacttagggttgcactatgaaaaagcctgtgtgtgtgttctgttattcATCTGTGTGAcgtgatcaatcagtttattccagttcggaatgaaaatgatttattgtattttaagagcaacagttccaacctagacagatatgTAAGAGTGTTTTTAAACGGGGGAACACTACAATATCGATTAGGCCTATAAGTTTAGTATAGCTGCTTTTTCATAACATTTTAGTTTAAGTAGGTCTAACGTGATGATATTATAAAAACATAAAGGGCATATTTTTCTCTATTGATCATATTATAAAAACATTGCAACTCACCATGTCACTGAATCAATGGGAGCCCTGAGCTTGTTTCCCGGCAACAAGACAGTCCCATCTAGGAGTGATGGGAGACAGTGACATGTTCCTTATGTCCAGTCTACTCCGTAATTTCGTTTTTGTTGGTGTCATTGCGGAAAACCCTGCTTCGCAGAGATAGGGTGTTGGCAATGGAAGCAATGTTTTCAGTGCTTTTGTGGCTCTCTCAGGATATTCAGCCTTGATTTTAATCCAGGTCGGCAGAGATTAAGTTATCTCAAACATACTTTTAAGGCCActgtcatttacaacatcaaGGAGTTGATCTTCTTCCTGCACAGACATGGACGATTCACCTGGGATATTCACAAATGGGTCGCGGATCCATTCCTTCGCACTTCGTGGGTCTTTGGCGGTTGGGAAGTAACGCTCGAACTCTGTTGACAGCGAAGCTAGGTGATCGTGCACCAGCTGGGAGAAAGACGGACCGGTATCTCCCAAAATCCCTGCTAATGTTTGGAACATGTCAAATATGCCCCTGTCCACTCGCCGTCCCCACAGTTCCAGTTTGGCTTTGAATGCAGCCACTTTATCTGCCAACTTAAAGACAGCTCTCATTCACCCCTGAAGTGACAGATTGAGTTCATTGAGCAGGTTGAATATGTCGCAAAGGTAAGTGAGTTTTGCGACCCATTCCTTGTCATTGAAATGTGCTGCCAGTGGTGACTTTTTTTCTGAAAGAAATCTCTGCAGCGGCTCTCTTAACTCAAACGCTCTGGCAAGCTATCTAGCCATCTGACATCTGTGTATGAGAGAAGGCGTTTGAGCTCTGAGTCCATTTCTTCACAGGATGTGGATAATGGAGACTTTTTACTGGGAGGAGGATGTGAGCAAGAGATCCTAATCTCCCTCAAGAGGCATTGCTGTACATTATCGTACATGACCACTAAGCCTACGCTCAATACTTGCTCAGTCACTACACTGATGAAGCGCTTTTGTTGTTGTCGATCATCGGCCACGATTTAGTGATGGCTGTCAGGAATGACAGACGGGACATACTGGGTCTCATACTGCTTAGCCCACTGATAAGCAGATTGGGAAGAGGGGTTGGGTAacttaaagaagtctcaaggtattgcttgcATGAGGTAGCATACCTCATGataagttgtagaccacactacataccaagagagttctcatctatattattcgtagacatctatttaccacaacaatccgatgctggcactaagaccgcactcaacgaacTGTATAAAGACATAAGTAAACAaggaaatgctcatccagaagcgatGCACCTATTGgcaggggactttaatgcaggcaaacttaaatccatttcacctcatttctaccagcatgtcacatgtgcaaccagaggaaaaaaactctagaccacctttactccacacacagagatgaacacaaagctctccctcgccctccatagggcaaatctgaccatgattctatcctcttgattcctgcttacaagcaaaaacgaaagcaggaagtaccagaagtggtcagatgacatgaatgctacactacaggactgttttgctagcacagactggaatatgtttcaggattcatccaatggcattgagtataccacctcagtcaccggcttcatcaataagtgcatcgacgacgtcgtccctacagtgaccgaacgtacatatcccaaccagaagccatggattacaggtaacatacgcaccgagctaaaggcagGAGCTGCCTTTAGCTCccaaaaaacgtacccatttgaaactgcctatttctcagccccagaaactagaatatgcatataattgtcagattaggatagaaaacactctgaagtttccaaaactgtcaaaatattgtctgtgagtgtaacagaactgatattgcaggcaaaaacctgaggaaaatccaatcaggaagttttgaaacctctctgttcctatgcatgcctatcctccatttaaagggatatcaaccagattcctttttataTGGCTTCTCTAAggtgtcaccagtctttagacatagtttcaggcttttattttgaaaaatgagcgagaaagatcacattgcgtaagtggtaggtgggggctctcagagtgagttttgcgcaacagagtaaagcggccattgtttctccctttcctattgaaaaacctacactcccgtttgatatattatcgaatatatattttaaaaacaacctgaggattgattataaaaaacatttgacatgtttctgtggacattatggatattatttggaatttttgtctgcgttgtcgtgaccgctctttcctatggatttctgaacataatgtgacaaacaaacagagttattttggatataaaatcatctttatggaacaaaaggaacatttgttgtgtaactgggagtctcgtgagtgaaaacacccgaagatcatcaaaggtaaacgattaattcgATTGCTTttttgattttcgtgaccaagctacctgatactaggtgtacttaatgttttgtcatgcgatcgataaacttacacaaacgcttggattgctttcgctgtaaagcataatttcaaaatctgagacgacaagtggattaacaaaaggctaagctgtgttttgcaatattgcacttgtgatttcgtGAATATTTGTCATATTTTTgtcatattatttgactgtggcgctatgctattcagcggtttcTGATGACAATTATAtcgcttaagggatgggtagcgtcaagaagttaacatATAGAGAGtatggtaacatcaaaaggttgtGAACGGAACAATATTTAGGTAATCCAATCAGTTGAAAGTATccgttggtacttaaagaatatgatgtcagatcagttgtcgtctgagacattattgctgatgataggacgacataaattgtgtcttggaaagtctacacattctagttatcatattcacatggaattgttgtgcaatttaaatgtttaaatatgaaactatttgtgaaaagattaaatgtaattttagtttTAAGAATGAGAAAACTGTTTACATATGTAGAATATGctccaggagacaggccagtacatcaggagacatggaggaggccgtaggagggcaacaacccagcagcaggaccgctacctccgcctttgtgcaaggaggagcaggaggagcactgccagag

Function

NR:

description
PREDICTED: SCAN domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU793493 True 5274 lncRNA 0.41 2 32126449 32131747

Neighbor

gene id symbol gene type direction distance location
LOC110529794 LOC106608176 coding upstream 15570 31951092 ~ 32110879 (+)
LOC110529230 LOC106571642 coding upstream 552876 31550399 ~ 31573573 (+)
stxbp6l LOC106571649 coding upstream 723885 31394194 ~ 31402564 (+)
ddhd1b LOC106571651 coding upstream 733375 31381107 ~ 31393074 (+)
psmc6 prs10 coding upstream 749861 31368752 ~ 31376588 (+)
LOC118965508 NA coding downstream 3449 32135196 ~ 32141382 (+)
LOC110529798 LOC106571640 coding downstream 20954 32152701 ~ 32156250 (+)
LOC110529799 LOC106571639 coding downstream 31574 32163321 ~ 32166068 (+)
LOC110529801 LOC106571636 coding downstream 40465 32172212 ~ 32193704 (+)
LOC110529803 LOC106571638 coding downstream 62460 32194207 ~ 32214087 (+)
G697191 NA non-coding upstream 5485 32120760 ~ 32120964 (+)
G697188 NA non-coding upstream 8433 32117785 ~ 32118016 (+)
G697174 NA non-coding upstream 34742 32091450 ~ 32091707 (+)
G697165 NA non-coding upstream 42706 32083527 ~ 32083743 (+)
G697164 NA non-coding upstream 43037 32083191 ~ 32083412 (+)
G697204 NA non-coding downstream 15819 32147566 ~ 32147966 (+)
G697214 NA non-coding downstream 35364 32167111 ~ 32167338 (+)
G697215 NA non-coding downstream 35708 32167455 ~ 32167671 (+)
G697217 NA non-coding downstream 36833 32168580 ~ 32168796 (+)
G694036 NA other upstream 2333702 29790997 ~ 29792747 (+)
cdca4 LOC106571684 other upstream 3188176 28930668 ~ 28939888 (+)
G693207 NA other upstream 3420697 28704850 ~ 28705752 (+)
btbd7 btbd7 other upstream 3568076 28495104 ~ 28605625 (+)
G692424 NA other upstream 4056221 28069900 ~ 28070228 (+)
G699605 NA other downstream 1995846 34127593 ~ 34128301 (+)
LOC110529856 LOC106571576 other downstream 3323101 35454437 ~ 35462086 (+)
G700685 NA other downstream 3481417 35613164 ~ 35614666 (+)
G700864 NA other downstream 3772302 35904049 ~ 35904698 (+)
G702415 NA other downstream 4568691 36700438 ~ 36700739 (+)

Expression


Co-expression Network