G697632 (ppp1cb)


Basic Information

Item Value
gene id G697632
gene name ppp1cb
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32255521 ~ 32268603 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU793972
CAAAATGGTATGGCATAAAAGTAAGCAAGCCTGATACCTGTGACTACAAGTCAGAGGACTTCGAGAGCTGGTGTCAGACAGACTTGGCCTTAACCATGTCCAAACGACTTGGTAAAAATCGCTGTTCTAAATTTGTAATTGGCTGACATACAACGTAATACCTTTCTGGAAGACAACACTAGGCCCTCTGATGCACTGGTTTGAAAGGCACCTTAAAGGATAATGACACATGAGGCAGGGTCAACAGcactgttccatttattccattcaaaGATTCTGAAACAAACTTGTACAAATCTCAAAACTGTTTAAAAACAATGACAGTTTCCAACTTGAATAGAGACCGATAAATGAGAACAAGGCAAAAGGCAAGATATGCCCTAACTCAAACTAAAATGTTATTTCAAATATTCCTTAGTAAGCTCATTAGTTGGATGAGAATAATAATTCTGAACCAGATATTGGAATCAGCATACAGGAAAGGGTCCACCAAGTAGATATACTCACTGGCTCATGCATTCTGATGCCTTGCTTGTTGTTGATGTCTTCAACCTCTTTAGGCGGTCAATCTACCTCTAGGGGGCAGCAATGTCTAAGTAACTGACACTGCCGAGTAAAAAGTGCCATCTCTGCTAGCTTGGTAAACATGAGCTGACCTCCTTGTGTAATATTTCATGTTTACAATAACTGCAGGGGCAATGCTGAAAATAGCACTTAAAAAATGGAAATAGTCTTGTGGCCAACtggtcgtgtgtgtgtgagaaaaataATAGGCTACTGAACACCAATTGAAACCAGGTGCCTTGAATGTCTTGCCTTTAACTTCCCAAGCCACAACCATCTATGCATTCTCACAGGCATACAGTAAAAACAATGTCCATAACAAAACCAACAGGCATTTGGAACACCCATTTGTGAGCCCTTTGAGTTAGTACACACAACCTTAACTGTACTAGTACTTCTCTGTATAGAATGTGTACGCAATACATGCCCCGTGTGTGTATATACCATCATTTTGTATGGGTACTTTCAAAGTAATTTTGTTAAAACTTCATTAGTGTCCGCATAAAGAGAACATTGAGTCCAACAGGGTGAAAATGACATTCTCCAAACTCACTAGGAGGCTAAACCATTCCAATCAGTTACTGTAGCCAAAATGTGGGAGGAAAATGACATGTTATTAGTAATATTGTGAGAAGGTTACATACGCATTAGCAGGGAAAATGCAAGGGTCTGGAAACGTTATAGGTCTGGAAGAATTAACGTTGTTGGCTGGGGGTAAAGAACCCACCTCACTCAAATAATAAGCTATACTTTTTACTATGTTTCATTGAAGGCAGAAAAGCGTCCGTTCCAAATGTGTTGCCCCTTTCCACAAAAGGTTTGTATCGTATTGCTGCACCTTAACCTGAGCAACACATTTCATAGCATTGAAAATCCACAAGTCAttatgaataaaaaaacaaaagttCACAGCAAAGATTTTATGTTTTACACATATATGAAAGAGGTGAGTGGGGGTCAGGGGGGGCTAGAGCGCTTCCTatagatgggagggaggggacagcagGGGAAAGGGTGCGAGGAGGATGCGTGACGGGGGGGAGGGGGGCCAGACGCTCACCTCTTCTTGGGGGCTTGGGCAGTACGGGGCGGGGTTACGGGGCGTCCCGAGTTCACCCCTCCATACTGGTACTTAGCTTTTTTCTCTGACGGCTTCAAAATCTGAAAGGAACACATGAGGGACTCGTCAACGCTCATCATGCCCCCAGCGTTATCAAACTCCCCGCAGTAGTTGGGAGCCGAGAACAGCGTCACCAGCTGCCGTTTGGCAAAAAACTCATAGCCGTCCTCAACAACCTGGTGGGCTCTGCAGATGAGGTCCAGGTCGTGGCGGTTGAGGAACTTGCTGACCACGTCAGCCCCAAAGGTGAAGGAGACACCCCGGTCGTTTTCCCCCCATCCCTGCACGTCTTTGTCTGGATCCGACCACAGCAGATCACACAGCAGTCCTGTGTCAGGGACATCAGTTGGCCTCATGATGCGTCGAATTTGCTCCATGGACTGTAGATCAGGAGAGAGACCTCCATGGCAGCAGAAGATCTTCTCATCGATTATAGCGGCGATGGGCAGACAGTTGAAGCAATCTGTGAAGGTCTTCCACAGCTTTATGTTGAATCTGCGTTTGCACTCATCATAGAAACCGTAGATGCGGTTGATGGAAGCACACTCGTGGTTGCCTCTGAGTAGGAAGAAGTTCTCGGGGTATTTGATCTTGTAGGCCAGCAGTAGACAGATGGTCTCCAGGGACTGCTTGCCTCGGTCCACGTAGTCTCCCAGGAAAAGGTAGTTAGCCTCCGGCGGGAAGCCCCCGTACTCAAAGAGCCGCAGCAGGTCTGTGTACTGGCCATGGATATCACCGCAGATTTTGAGCGGAGCCTCCAGCTCCAGTAGAATGGGCTGACTGAGGAAGATCTCCCGGGACTTGATGCACAACCCCCGCACCTCCGCCTCCGTCATCTGGACTATCTTCCCTGGACGACATCCTCGTACTTCAAGCAATCGAGAGATGATGCTGTCAACGTTGAGCTCGCTTTCCGCCATTTTCTTTGAAACACTAAAAACTACTACGCAGAGAGAACTACGTCGTGCTCACCAGCAGAGGGCGTGGTCTACTACTGTACAAACGGTGTAGTTTATTTTGGTTCACTCAGGCTTTCTGTATTTTGGCAAAGATTTGTAACCAGCAGTACGGTACGAGCTTTTTTTAAATCGTATTTGGGGGTACAAAACATTTTGCAGGTAGCTTTCTTTACCCTTCATTGAAGCTGACCTGCCTGCAAACAAAGTACATTCTAAGTTTATTAACATAATTTGGGGATATCCATTACTTTTATTGTAACCCCTCTATCATAGCTCTATCAAATATTAACATGGTGAGGCAACTTGTTGTGTACCCTCAATAAAataccccccctttctctctttgttaATCTCCATGGACAATGGCTCCAACTTCTATTGCAATGGGCTTGGGTTACGCTGACCTATTCATCCTGGTAATTCATAGGGGCTCACATGATGCAATTGAATGCCAACATTTCTCTTGAAATACCCAATGACATAGTTACTGACAATTTAACCATTTCGGTTGATACAAAGCTAAATTATTGTCCATGCCACCTACATGCTTTTGACACTGTATTTCCACATTCAAACTATAAAAAAGTATTTGTTATCTGTTGCTGAATATCATTAGAAACCAGTTCCTTTCATCTcaacctctttctctcccatttTCCTCTTATTCCGCCGTTCTCTGCAGGACATGAGTAGCCATGTGATTCCCCAGCCGATCAGTAAGCCAGTGACGCCCAGCAACACGGGCACCCACACAGGTATGGAGGAGTCACACCGGGGCACAGGGCTGGGGGTGGTGGTGTTAGTGACTGGGACAGGGGTGGTAGTGGTAACAGGTGGACTCGGGAGGCTATTGACCTTAGTGAAGATGAAG

Function

symbol description
ppp1cb Enables protein heterodimerization activity. Acts upstream of or within convergent extension involved in axis elongation and liver development. Predicted to be active in cytoplasm and nucleus. Is expressed in intestine and liver. Human ortholog(s) of this gene implicated in Noonan syndrome-like disorder with loose anagen hair 2. Orthologous to human PPP1CB (protein phosphatase 1 catalytic subunit beta).

NR:

description
Serine/threonine-protein phosphatase PP1-beta catalytic subunit

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU793972 True 3514 lncRNA 0.45 9 32255521 32268603

Neighbor

gene id symbol gene type direction distance location
LOC110529804 ypel5 coding downstream 37949 32214451 ~ 32217572 (-)
LOC110529796 LOC106571727 coding downstream 120327 32132683 ~ 32135194 (-)
LOC110529793 LOC106571728 coding downstream 551996 31657632 ~ 31703525 (-)
LOC110529792 LOC106571729 coding downstream 649330 31602683 ~ 31606191 (-)
LOC110529791 LOC106571644 coding downstream 751531 31486817 ~ 31503990 (-)
bpnt1 bpnt1 coding upstream 492 32269095 ~ 32278234 (-)
LOC110529808 LOC106571628 coding upstream 17455 32286058 ~ 32287169 (-)
LOC110529806 LOC106571627 coding upstream 20461 32289064 ~ 32301293 (-)
LOC110529812 LOC106571726 coding upstream 37539 32306142 ~ 32322140 (-)
LOC118965610 NA coding upstream 148869 32417472 ~ 32421085 (-)
G697604 NA non-coding downstream 30708 32224607 ~ 32224813 (-)
G697561 NA non-coding downstream 95473 32159223 ~ 32160048 (-)
G697560 NA non-coding downstream 96866 32158354 ~ 32158655 (-)
G697559 NA non-coding downstream 97302 32157997 ~ 32158219 (-)
G697555 NA non-coding downstream 105704 32149612 ~ 32149817 (-)
G697642 NA non-coding upstream 16287 32284890 ~ 32285129 (-)
G697643 NA non-coding upstream 34267 32302870 ~ 32303081 (-)
G697644 NA non-coding upstream 34554 32303157 ~ 32305119 (-)
G697649 NA non-coding upstream 56208 32324811 ~ 32325062 (-)
G697651 NA non-coding upstream 60215 32328818 ~ 32330202 (-)
G696499 NA other downstream 777494 31477354 ~ 31478027 (-)
G696073 NA other downstream 1400114 30855107 ~ 30855407 (-)
G696068 NA other downstream 1408312 30846902 ~ 30847209 (-)
G697774 LOC106571626 other upstream 230196 32498799 ~ 32499410 (-)
G698356 NA other upstream 720642 32989245 ~ 32990061 (-)
G699468 NA other upstream 1674419 33943022 ~ 33952356 (-)
ankef1a LOC106571587 other upstream 1754688 34017010 ~ 34029131 (-)
G701454 NA other upstream 3314395 35582998 ~ 35589877 (-)

Expression


Co-expression Network