XLOC_002616 (mrrf)


Basic Information

Item Value
gene id XLOC_002616
gene name mrrf
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 9305050 ~ 9346360 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004865
AACCACATGTTCTGATGATGCAAAACACTGAATGTAGTGACATGTGCCCTTGAGTTGCCCATGTTGTCAAAAAGGGACTGTAATGCAAGGCATGCTTGCTAAGATATATTTTTCTGCATGAGAGTGAATTTAAAAGCGCCCCCTGGTGGCACTATTAAACTTCATCCAATCTCCAAAGTCTAGTTACCACAGACATGGCCTTGAGTCATCTGAACCTCCTGCGGCCAGTATTGTACCGATCTCTGCCATCAGTTTTTAGGATCCCACGACTGACCAGTTCAAGAGTCTCCTTTCTGCCTCAAGTGAGCCAGTGTCCCGTGGCTCTGCCGAATTACGCCCGTCATTATGCCACAAAGAAGAGTAAAGcaAAGGCAAAAGGGCAGACAGCTAAAGTGAACATCAATGCAGCTTTGGTGGAGGATATTATCAGCCTGGAGGAGGTGAAGGAAGACATGGCTGCTGTTCTGGCTGCTCTGAAAGAAGATTTCAGCCGCAACCTCAGCGTTCGCACATCACCAGGTGCACTGGACCACATTACAGTCACCACAAAGGATGGCAAATTTCCTCTCAACCAGCTGGGCCAGATATCCATGAAGTCTCCTCAGCTACTTGTGGTCAACATGACTGGCTTCCCAGAGGCCATGGTAGCCGTCACCCGTGCCTTGCGAGAGAGCAGCATGGGACTCAACCCAGAGGTGGAGGGCACCATCATCAGGGTGCCTGTTCCCAAGGTAActcgtgaacacagggagaatctGGCGAAACTGGCGAAGCAGTTCAGTAATAAATCTAAAGACTCGCTGAGGAGAGTCCGATCAAATGCCATCAGTCAAGTGAAGAAGAGCAAAGATGCCGTTTCTGATGATACCATTCACTTGATAGAAAAGCAGATTCAACAAATGACCGACAGTTTTACAGCAGACATCGACAAACAGCTGGCAACTAAAACCAAGGAGTTACTTGGATGACAACAAGGCCTTCAAACTTTCACAACACCTCCGGAAACCCAACTATGTCCCACTATCAGGTCAAActggaacaaaacaaaacagctaaTGAACTTACTGACGGAGGCACTGAAGGTGGTGTTTTGGAGGGTGTTTTTCCTCATGCATAAACAAATGTTGGCGTGGCACGTCAGTGGTTTATGGTGCTCCTtgtgttctcatctgcaaacaaacaaacggaGGGCAAATGACGTTTTAATGTGATTTGAGGCACTCCTCCTAATCAAAGCGATGCCACAAACATGGTGTTTATGTCAAAAACACAGTACTGAATGTAAATGCTGTGGTGAAAGTCACACAGGGTGAACAACGAGTGCGCACATGATGTCAACATTtgtttcacatttacatttacagcccaaaaatagtcatttattttttgctgtgtgaTCTGATCTGCTAATGTAAACTGAAAAAATGCATTGGTTATTgttctgtt

Function

symbol description
mrrf Predicted to enable ribosomal large subunit binding activity. Predicted to be involved in translation. Predicted to be active in mitochondrion. Is expressed in eye; immature eye; midbrain; pharyngeal arch 3-7 skeleton; and somite. Orthologous to human MRRF (mitochondrial ribosome recycling factor).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005739 mitochondrion cellular_component
GO:0043023 ribosomal large subunit binding molecular_function

KEGG:

id description
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-040704-12 Predicted to enable ribosomal large subunit binding activity. Predicted to be involved in translation. Predicted to be active in mitochondrion. Is expressed in eye; immature eye; midbrain; pharyngeal arch 3-7 skeleton; and somite. Orthologous to human MRRF (mitochondrial ribosome recycling factor).

Ensembl:

ensembl_id ENSDARG00000034174

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004865 True 1446 mRNA 0.46 8 9305050 9346360

Neighbor

gene id symbol gene type direction distance location
XLOC_002614 anxa3b coding downstream 35317 9247593 ~ 9269733 (-)
XLOC_002615 NA coding downstream 37339 9266053 ~ 9267711 (-)
XLOC_002613 si:dkeyp-41f9.4 coding downstream 112600 9186651 ~ 9192450 (-)
XLOC_002612 NA coding downstream 158408 9145508 ~ 9146642 (-)
XLOC_002611 BX323017.1 coding downstream 163371 9141565 ~ 9141679 (-)
XLOC_002617 morn5 coding upstream 50945 9397305 ~ 9410068 (-)
XLOC_002618 BX248511.1 coding upstream 188255 9534615 ~ 9538335 (-)
XLOC_002619 NA coding upstream 300002 9646362 ~ 9661692 (-)
XLOC_002620 strbp coding upstream 488536 9834896 ~ 10018794 (-)
XLOC_002621 NA coding upstream 914985 10261345 ~ 10288683 (-)
XLOC_002609 CU694950.1 non-coding downstream 288213 9016721 ~ 9016837 (-)
XLOC_002606 NA non-coding downstream 446482 8841698 ~ 8858568 (-)
XLOC_002622 NA non-coding upstream 927369 10273729 ~ 10278533 (-)
XLOC_002623 BX323065.1 non-coding upstream 972948 10319308 ~ 10332427 (-)

Expression


Co-expression Network