XLOC_026166


Basic Information

Item Value
gene id XLOC_026166
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 11703909 ~ 11717849 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052444
caAAATTTTATCCAAAATTGGTTTGAAATGACTTTACTCCATTAAACATTACCTGGGGAAAcaattgaaaaatatgaaaaatttcacaggaggactaatctTTTTGTATGTACACAAATCCTTCTTCAAAGTTGGTTTAAAAGCCTCTTTCTTGTCCTGTCCATTTCCATTAGCAGGACTAAATGGCTTTGGTCAGGATGAAAGGCCGGTCGTTTGGCTGTGATGTCTTTCTTCTGCGTGATTAAGCAAATATCCCACATCTCCAGACCCCCAGAGGCCTCTGGGACGCTCTCCCCCTTCTTCGGGCCTCCTGTCCTGGGACGCCGCTTTCCTGGCTTTCTGCTTCTGTCCATATTTAACCATTGCAGGAAGacACAGACATTGTTGAGCTTCAGATGGCAGGCGGAAAAGTTTAAAAGACTAGAAATCAGCTGGAGCCGTGAACCAAGCGGTGGCGTTTGGATCAAGGGATGTGTTTTGGCTTCAGGGCAGCCCAGAAACCAGCCTGTCTGGTCTTGTCTGGAGCGATGGCTGGCATGGAATGGAAAATACCCACCTTCTGCATGGAAATCAGGCAGAGGTAAAAGATGGAGCGTGCGGATCAGATGCATGGTTTTGACGTGCGcgagtgagtgtgtgcgtgtgtatgtgtgtgcaggaTTGGAGACTGGCCTCTAGGAGAGGAGAGGCCCTCCTGCCTGTGGTAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052444 True 707 lncRNA 0.48 2 11703909 11717849

Neighbor

gene id symbol gene type direction distance location
XLOC_026165 hlfa coding downstream 79215 11585298 ~ 11624694 (-)
XLOC_026164 NA coding downstream 123189 11576654 ~ 11580720 (-)
XLOC_026163 NA coding downstream 193857 11491443 ~ 11510052 (-)
XLOC_026162 AL935044.3 coding downstream 302609 11397269 ~ 11401300 (-)
XLOC_026161 AL935044.1 coding downstream 330474 11371786 ~ 11373435 (-)
XLOC_026167 FOXK2 coding upstream 61840 11779689 ~ 11828206 (-)
XLOC_026168 coro7 coding upstream 149852 11867701 ~ 11922713 (-)
XLOC_026169 hmox2b coding upstream 240743 11958592 ~ 11972516 (-)
XLOC_026170 cfap70 coding upstream 259422 11977271 ~ 12026741 (-)
XLOC_026171 NA coding upstream 393311 12111160 ~ 12113782 (-)
XLOC_026160 AL935044.4 non-coding downstream 341526 11358518 ~ 11362383 (-)
XLOC_026158 NA non-coding downstream 399981 11298792 ~ 11303928 (-)
XLOC_026175 NA non-coding upstream 637683 12355532 ~ 12358516 (-)
XLOC_026177 NA non-coding upstream 1111347 12829196 ~ 12849611 (-)
XLOC_026182 NA non-coding upstream 1413228 13131077 ~ 13131324 (-)
XLOC_026183 NA non-coding upstream 1630369 13348218 ~ 13361083 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G16589 NA non-coding NC_056701.1 CM032070.1 3568792 ~ 3569146 (+)