XLOC_026169 (hmox2b)


Basic Information

Item Value
gene id XLOC_026169
gene name hmox2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 11958592 ~ 11972516 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051078
gaACAATCACTTCACTGGATGTTCTTTTATGATCATCCTCAATAGTCAGCTAAACGGACAGTTGGAGCCCCAGTTTAGGAGGTTGAGTTGGAGTCAGAAGACGCTGGGATGTCTGCTGTGAGGACGGAAGATGCTGCCAATGGAACGAGCACAGCTAATGGTGGAGGAGGAGTCAAGTGTGAAGAGGGTGGAGTCACAGTCCTCAGGCCGACAGATCTGTCAGAAATGCTGGCGGCGGGAACAAAAGAAGTGCACCAGAAGGCAGAAAACACAGAGTTCGTCAAAGACTTCCTGAGGGGACGCATCCGCAAGGAGCTCTTCAAGCTGGGTCACGTGGCTCTATACTTCACATACTCTGCTCTAGAAGAGGAGATTGAGAGGAATAAAGATCACCCTCAGTTTGCTCCGCTCTACTTCCCCCATGAGCTGCACCGGCGGGACGCTCTGGCTCAAGACCTGCAGTTTTTCTATGGCTCAGACTGGCAGACCCAGATCAGCATTTCTCCCGCCACGCAGCGATATGTGCAGCGCATTCATCAGATTGGCAAGGACGAGCCGGCGCTGCTGGTGGCCCACGCTTACACCCGATACATGGGTGACCTGTCGGGGGGGCAGGTGCTCCGGAAAGTAGCCCAGCGCGCCCTAAAGCTGCCCGCCAGCGGAGATGGACTCAACTTCTACATGTTCGATAACGTCAGCAATGCCAAAGCCTTCAAACAACTGTACAGGAGCCGCATGAACGAGCTGGAGCTGCAGCAGGACACCAAACTCAAGATCGTCGAAGAGGCCGTGCTGGCGTTCCAATTCAATATAGAGATCTTTGAAGAAATAGGTGAGGTTGGACAGACTCTTGAGGACGATGTTTTTGACGCTGCTCCTGTTCATGGCGAGATGCAGGGAGACATCAGTCAGTGTCCGTATCATGCTGCTAAAATGGCTGCCAGTGGTGGGTCATCTTATGTTTGTCAAATAGCCAAGACTGTGCTTAAAAATCCCTCCGGTCAAGTCCTATTGGCTGCCTGGATCGCTGCTCTCGCCGGATTGGCTGCTTGGTACCTCATGTGA
>TCONS_00051079
GTAATATTGACCACTTCTACAATCTCTTCCCTGTCCATCATAACTCATACAGCTTCAGCAGATCATTAAAATCTCTGTTTTAATCAGGATTTCCCGAAGAGCTGGACTgaACAATCACTTCACTGGATGTTCTTTTATGATCATCCTCAATAGTCAGCTAAACGGACAGTTGGAGCCCCAGTTTAGGAGGTTGAGTTGGAGTCAGAAGACGCTGGGATGTCTGCTGTGAGGACGGAAGATGCTGCCAATGGAACGAGCACAGCTAATGGTGGAGGAGGAGTCAAGTGTGAAGAGGGTGGAGTCACAGTCCTCAGGCCGACAGATCTGTCAGAAATGCTGGCGGCGGGAACAAAAGAAGTGCACCAGAAGGCAGAAAACACAGAGTTCGTCAAAGACTTCCTGAGGGGACGCATCCGCAAGGAGCTCTTCAAGCTGGGTCACGTGGCTCTATACTTCACATACTCTGCTCTAGAAGAGGAGATTGAGAGGAATAAAGATCACCCTCAGTTTGCTCCGCTCTACTTCCCCCATGAGCTGCACCGGCGGGACGCTCTGGCTCAAGACCTGCAGTTTTTCTATGGCTCAGACTGGCAGACCCAGATCAGCATTTCTCCCGCCACGCAGCGATATGTGCAGCGCATTCATCAGATTGGCAAGGACGAGCCGGCGCTGCTGGTGGCCCACGCTTACACCCGATACATGGGTGACCTGTCGGGGGGGCAGGTGCTCCGGAAAGTAGCCCAGCGCGCCCTAAAGCTGCCCGCCAGCGGAGATGGACTCAACTTCTACATGTTCGATAACGTCAGCAATGCCAAAGCCTTCAAACAACTGTACAGGAGCCGCATGAACGAGCTGGAGCTGCAGCAGGACACCAAACTCAAGATCGTCGAAGAGGCCGTGCTGGCGTTCCAATTCAATATAGAGATCTTTGAAGAAATAGGTGAGGTTGGACAGACTCTTGAGGACGATGTTTTTGACGCTGCTCCTGTTCATGGCGAGATGCAGGGAGACATCAGTCAGTGTCCGTATCATGCTGCTAAAATGGGTAAACCTATACCAGACTATTCTTGCatatgttaaagagcccctattatacattgaaa

Function

symbol description
hmox2b Predicted to enable heme binding activity and heme oxygenase (decyclizing) activity. Predicted to be involved in iron ion homeostasis; porphyrin-containing compound catabolic process; and response to oxidative stress. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; gill; and liver. Orthologous to human HMOX2 (heme oxygenase 2).

GO:

id name namespace
GO:0042167 heme catabolic process biological_process
GO:0006979 response to oxidative stress biological_process
GO:0055072 iron ion homeostasis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006788 heme oxidation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004392 heme oxygenase (decyclizing) activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-52 Predicted to enable heme binding activity and heme oxygenase (decyclizing) activity. Predicted to be involved in iron ion homeostasis; porphyrin-containing compound catabolic process; and response to oxidative stress. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; gill; and liver. Orthologous to human HMOX2 (heme oxygenase 2).

Ensembl:

ensembl_id ENSDARG00000078452

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051078 False 1065 mRNA 0.53 6 11958592 11969820
TCONS_00051079 True 1103 mRNA 0.51 6 11960673 11972516

Neighbor

gene id symbol gene type direction distance location
XLOC_026168 coro7 coding downstream 35879 11867701 ~ 11922713 (-)
XLOC_026167 FOXK2 coding downstream 130386 11779689 ~ 11828206 (-)
XLOC_026166 NA coding downstream 240743 11703909 ~ 11717849 (-)
XLOC_026165 hlfa coding downstream 333898 11585298 ~ 11624694 (-)
XLOC_026164 NA coding downstream 377872 11576654 ~ 11580720 (-)
XLOC_026170 cfap70 coding upstream 4755 11977271 ~ 12026741 (-)
XLOC_026171 NA coding upstream 138644 12111160 ~ 12113782 (-)
XLOC_026172 srl coding upstream 155601 12128117 ~ 12187245 (-)
XLOC_026173 tfap4 coding upstream 230466 12202982 ~ 12227359 (-)
XLOC_026174 pam16 coding upstream 372764 12345280 ~ 12352793 (-)
XLOC_026163 NA non-coding downstream 448540 11491443 ~ 11510052 (-)
XLOC_026162 AL935044.3 non-coding downstream 557292 11397269 ~ 11401300 (-)
XLOC_026160 AL935044.4 non-coding downstream 596209 11358518 ~ 11362383 (-)
XLOC_026175 NA non-coding upstream 383016 12355532 ~ 12358516 (-)
XLOC_026177 NA non-coding upstream 856680 12829196 ~ 12849611 (-)
XLOC_026182 NA non-coding upstream 1158561 13131077 ~ 13131324 (-)
XLOC_026183 NA non-coding upstream 1375702 13348218 ~ 13361083 (-)

Expression


Co-expression Network