XLOC_026170 (cfap70)


Basic Information

Item Value
gene id XLOC_026170
gene name cfap70
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 11977271 ~ 12026741 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051080
atggaGAATAACAGAGAGTTCGGGAGAGCTGTGGCTGTGCAGGTCACTGTAATGTCGGCTAGTCGTTTGAAAGGCAGCAGGACTGATTCGTGTCTCAGTTTCGTTCGGGTGGAGTTTAATGGATGTGTTCTGGGAGATTCACAAAAACTGGACGTTCCTGTGGACAAAGATGTGGTTTACAACTTCACCTGTAGTTTTGAATGCTCAGAAGTTGCACACACACTTGATGATGTGGCTCATAAACCTGTCCTATTGACGGTGCTTGAGATCCTAccaaaagagaaaaaacaaaaagaagagaAAACCGCTGCATTAGGACAAGCCAGTGTGGACCTGTTGCCTCTGCTACGAGGTCAATGTAACTTCTCCTCCACTGTGCTCCTTCATGCCGTGACTGGATCTCCAGCTGATGTTGCCTTACGTGAAGATGGCACAAAAGTACAGACCACACTTGATGTAACTGTGAGCGTTTCAGAGCCGTTGCTCTCTGATGCCCAGCGCTCGGACTCGAATGTGCTGATGGTCACGGTAGAGACAGCGTATTCTGTTCCTGAGGTCTGGAATCCTGCCTCCACTCCTCCATCCAGCTATGTAGCTGCCCTGCAGATGCCCGTCTCAGCCACTAAAGAACAAATCTTATCATTCTCCAATGGTGTCTTAAAAACGGGTGGTGAGAAGGAGCCAATGCCAAGACCCAAGAAATGGCCTTTGGGGCCTCTTCTCGCTCCTGGGGCCGAGGTTATCCAGGGCCTTTATATTGATGCAGAACCCACAGACATGGATCACGGAGACCTTACTGACATAGAGGACAAGGATTTCAGAGCAGATGCCGAGTGTAATCAGAAAAGGGTGAGCTGGGATACAGCCCGCCGTTGCTTTATTGATGCAGGAGGTGTGGCCAGCCTGTCCCGCAGGATTGCCCAATGCAGATTTTGGCCTGTTGAGATCATGAAAGTCACTCAGACGGTACCAGTCAAAGGTGCAAAGCAAAGCAAGGACAAGATGGGGGAGGAAGAGATACAGATCTCATTTCATGGAGTGGTGTACATGGATCTGGTGCCATTGTTGTACCCTGGAGTGCGGCGTATACACGGGGTGTACAGAATCTACCCATTTTATGAGGCTGATCTGCTAAATAAGACTCAGAGGACACACAGTGTTCTGAAGGAGTACATCAGAGCAGCACCACCACCGGGCCGCGCTCGTGCCAATTCCTCCGTCAGCTCTATAAAGGCATTTCAGACTAAAAACATGGAGAACCAAAGAGGAAACAATGAGATTTTCAAAAagccGGATTCTCAGGGAAAACCAGCTCAGGCTGAGAATGTGAATGGACAGGAGCAACAGGTGAACACAGAGGGCCAGATGTACGCCGATTCAAGATCATACATTATTATCGACATTTTTGTGGAAAAGCCACTGGTTCCAAAGAGACCACCGGAGGAGCTGGCCAAACGTGTGATGGAGCTGGTTCCACCAAGACCTCCTCTGCCTCGACGGCCAGCAGGAGCAGAACGAGCAGTGGAGGAGTACCAGTGTCAGATAGCCAGCGTGGCGGCTCAGGTGTTGGATCAGTACCAGCAGATGTTTGTGTCTGGTGGAAAAGCTCTGGATCCAGTCCTGCAGGAGCAGCGCAAACAGCAGCTGCTCGGAGAACTCAACTGCTCTGGCAAATACTTCGCCTTTAAGGAACAGATGAAGTACTCTGTGGTGCGGATCGTAAGAGAGAAGATGTTAAGAACTGAAGCGTTCTCCGACCCTGAGCAGCTACAGGCGTTTCTCAGTCAGCTCTATGTGTTCCTGGTGGACGAGATGCATGCGGCTCTCAATAAGACCTTGTCAGTGGACCCTCAGGAATCTCAAGCTGAATCTTCGCTCAGTTGTGTTCAGCTCAAACACTTCGCCAAAGAGGCTGAGCTCAACTCAGACTACCAGCTGGCAGAGCATTACTATCAGGAGTGCTTGATTCAAGAGCGCTGCAACGCATCCCACTGGTTTGATTATGGAGTTTTTCACATGCTGACCGCTGACCGTCTCAAGGCAGAGGAGTGCTTTCAGCAGGCCTTATCCATCGAGCAAACACACACGCCGAGTTTGCTTATGTGTGGTGTTCTGGCGGAGATAAACGGATGCTATACGGATGCAGAAACTTTCTTTGAAAGGGCGACTTCTGTGGAGCCAAAAAGTGTGGTTGCATGGACTGTATTTGGGTTGTTCAGCCAGAATCAGGAGAAGCCCATTCAGGCAGAGATGGCTTTTCGAGAGGCCAACAAACAACTTAATTCATCCCTGCAGAAGAACATGACGTCTGAATCAGAATTAACCTCTGAAAATCAATCTGGTCAGGAAAAAGTCCAGAAAGAGGATGGAGATATAGAGAAAACAGGAGGCGATGCAGATAAAGATGCTGTACTAGAAGAAGAAAGTCCACAGAAGAGCCTGGAGAGTAAACAGCAGATGTCATCCAGCAGTGTCTACATGGAGACTGTGTGGTTTCTCCTGCGCAGTCACGCATTACAGATGGCTCAACGTGCTCTGGCTTCAGAGCTGTTGTCTCCAGAAAAAAACCCGAGTTTGTATAATCTGGCTCTTGCTCAGCTTCAGATGCTGAGTGGAGATCCTGACAGTGCTGAATCCAGCCTGAGGAGGGCGCTCACTGACAACTTCCAGAATCCTGATATTTGGGCCCTGCTGGGTCACTTGCATTACCTGAGGGCCGATTACACTCAGGCTCAGAGCTGCTATGAACGGACGCTGGATTCGGTGCTggacactgcacacacacactcgataTTCCTGCGCTTGGGCGCCATCTACCTGCAGCATGGAGAATATGAAAAGGCCAAACCAGTGTTCCTGCGTGCCTGCAAACACTCTCCATCATGTCTCACTTGGCTCCGGCTGGGAATTGCCTGCTATAGACTGGAGGAGCTGACTGAAGCTGAAGAAGCTCTGACTGAAGCCAACGCTCTGAATAACAGGAATGCAGAGGTGTGGGCTTACCTGTCTCTTGTCTGTTTACGGACTGGCAGGAAACTAGAAGCAGAGCAGTCGTATAAATACACCATAAAGATGAATTTACAAGCGGAGCCACTTCTGCAAGAGATCCACGACCTGCAGTCACGTGTTGgctttgggaacccctgcttctGA

Function

symbol description
cfap70 Human ortholog(s) of this gene implicated in spermatogenic failure 41. Orthologous to human CFAP70 (cilia and flagella associated protein 70).

GO: NA

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-091204-50 Human ortholog(s) of this gene implicated in spermatogenic failure 41. Orthologous to human CFAP70 (cilia and flagella associated protein 70).

Ensembl:

ensembl_id ENSDARG00000058508

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051080 True 3153 mRNA 0.50 26 11977271 12026741

Neighbor

gene id symbol gene type direction distance location
XLOC_026169 hmox2b coding downstream 4755 11958592 ~ 11972516 (-)
XLOC_026168 coro7 coding downstream 54558 11867701 ~ 11922713 (-)
XLOC_026167 FOXK2 coding downstream 149065 11779689 ~ 11828206 (-)
XLOC_026166 NA coding downstream 259422 11703909 ~ 11717849 (-)
XLOC_026165 hlfa coding downstream 352577 11585298 ~ 11624694 (-)
XLOC_026171 NA coding upstream 84419 12111160 ~ 12113782 (-)
XLOC_026172 srl coding upstream 101376 12128117 ~ 12187245 (-)
XLOC_026173 tfap4 coding upstream 176241 12202982 ~ 12227359 (-)
XLOC_026174 pam16 coding upstream 318539 12345280 ~ 12352793 (-)
XLOC_026175 NA coding upstream 328791 12355532 ~ 12358516 (-)
XLOC_026164 NA non-coding downstream 396551 11576654 ~ 11580720 (-)
XLOC_026163 NA non-coding downstream 467219 11491443 ~ 11510052 (-)
XLOC_026162 AL935044.3 non-coding downstream 575971 11397269 ~ 11401300 (-)
XLOC_026160 AL935044.4 non-coding downstream 614888 11358518 ~ 11362383 (-)
XLOC_026177 NA non-coding upstream 802455 12829196 ~ 12849611 (-)
XLOC_026182 NA non-coding upstream 1104336 13131077 ~ 13131324 (-)
XLOC_026183 NA non-coding upstream 1321477 13348218 ~ 13361083 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000208_00519333_00533133 CFAP70 coding CI01000208 null 518930 ~ 533508 (-)