G699189 (LOC106571586)


Basic Information

Item Value
gene id G699189
gene name LOC106571586
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33834372 ~ 33836476 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU795613
CTCGGAAGTTGCCTCTCTGCTGGAAGCCACCTCGTCCACCTCCTCTCTGGCCAGGTCCACCTCCACGGTTGAACTGGTTCTTGCCTCTGCCTCCCCCCCGgacactccctcctcctctcttggGGGTCAAAGACCCCTGGTTGGGCTTCTTCTCAGCCGGCAGGGCCGCCTTGCTCTCCTCCTTGTACTGCTCCACCAGCTTGGCAGCATCCTCCTTCTGCAGCTCAGCGTAGCTCACCACAGCGAAGCTCTCACCTTCCTCTGGCAGGGTGAAGAATCCTTTCATTTTGAGGAGAGCGTGCTCGGGCACGTCTTTCCCGTCGCTCTCGGCCTTCTTCTGGGCTCTCTCCTTGTAGTCGTCGTCTGAGGGACAGACCACCACAGCCTTCCGCTGGTACCCAGCAAATAGACACATCTTCCTCTTTTGGCCCGGGGCAGACAGGTTGGTGTGGTCCAGGATATAGTTCCTCTTTTTGCGAGCAGCGATCTCAATGAACTTGCCCAGGAAGAGAGGTGCACGCTGGGAAATGGCCGTGAGCTTTGTTGTGTCCTTCGCCTGACGCTTCAAACTGCCAATCATCATCTTCTCCACGATGGTGTCGCTGCCCAGGATGTAATATTTCCCGGGGTTCTCCTGGATGTGCTTGTTGACCCAGGTGCTCTTTCCTGAGCCAGGCAGGCCCACCATGGCAATCACCTCGCAGTCCTTCTTGGTGTCAGGTGCCTTGGGTCCGCGGACACGGTCCTCCATGGTGACCTGCTGCAGGAAGGTGTAGCCCTCTGGCTGGGGGAAGTAGGGCGTGTCCATCTGGCCAAAGTTAAACTCCACTGCACAATTGTGGCAGATGACGTGGGGGAAGAGCGCTTTTCCTACTAGGGACTCCTTACTGGCCTGGAAGGCCACCACTGGCTCATTACCGTTCTTAGAAAAGGACATCTCCACCTCCTCACCT

Function

NR:

description
heterogeneous nuclear ribonucleoprotein U-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU795613 True 953 lncRNA 0.58 5 33834372 33836476

Neighbor

gene id symbol gene type direction distance location
LOC110529835 LOC106571598 coding upstream 5598 33823071 ~ 33828774 (+)
fzd3a fzd3 coding upstream 114737 33689214 ~ 33719635 (+)
LOC110529830 LOC106571599 coding upstream 153535 33656633 ~ 33680837 (+)
sf3b6 sf3b6 coding upstream 349968 33480209 ~ 33484404 (+)
LOC118965509 LOC106571610 coding upstream 381152 33446421 ~ 33453220 (+)
LOC110529837 LOC106571584 coding downstream 14160 33850636 ~ 33886984 (+)
LOC110529839 LOC106571597 coding downstream 53277 33889753 ~ 33908455 (+)
LOC118965510 LOC106571597 coding downstream 73277 33909753 ~ 33941058 (+)
LOC118965511 LOC106571597 coding downstream 83775 33920251 ~ 33930473 (+)
LOC110529838 LOC106571596 coding downstream 100050 33936526 ~ 33955195 (+)
G699157 NA non-coding upstream 75014 33707557 ~ 33759358 (+)
G699114 NA non-coding upstream 149140 33684127 ~ 33685232 (+)
G699141 NA non-coding upstream 178864 33655157 ~ 33655508 (+)
G699133 NA non-coding upstream 191046 33643118 ~ 33643326 (+)
G699121 NA non-coding upstream 208245 33625872 ~ 33626127 (+)
G699239 NA non-coding downstream 24172 33860648 ~ 33860875 (+)
G699240 NA non-coding downstream 26047 33862523 ~ 33862765 (+)
G699250 NA non-coding downstream 45396 33881872 ~ 33882170 (+)
G699251 NA non-coding downstream 50683 33887159 ~ 33887513 (+)
G694036 NA other upstream 4041625 29790997 ~ 29792747 (+)
cdca4 LOC106571684 other upstream 4896099 28930668 ~ 28939888 (+)
G693207 NA other upstream 5128620 28704850 ~ 28705752 (+)
btbd7 btbd7 other upstream 5275999 28495104 ~ 28605625 (+)
G692424 NA other upstream 5764144 28069900 ~ 28070228 (+)
G699605 NA other downstream 291117 34127593 ~ 34128301 (+)
LOC110529856 LOC106571576 other downstream 1618372 35454437 ~ 35462086 (+)
G700685 NA other downstream 1776688 35613164 ~ 35614666 (+)
G700864 NA other downstream 2067573 35904049 ~ 35904698 (+)
G702415 NA other downstream 2863962 36700438 ~ 36700739 (+)

Expression


Co-expression Network