XLOC_026171


Basic Information

Item Value
gene id XLOC_026171
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 12111160 ~ 12113782 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052445
GTTCACCTGTCGGAGGCTACGGACAAGTTCTTGGATGACCGCTACTTGCGAGAAGATGGCCGAGTCACAGAAAGGATTGGACCGAGTGTGGTTGCAGATCAACTTAAAGAGGAGGGGTTTCTGTTGAGgagacagcagtgtttgtgttgtcaagatgactatggagacttttgaagatggaggagagacttgtggtggCTGATTTGAGTTACCCAAAGCTGTAtgactcacaaatcttgaattttACCAATATCATCAGCAACGCTCGCACACAATACACAGCTGATTCAGTTATTGTTTAGTGACAAATCTAGTGGCCTTGCATCTTTGGAACATAAAAGTGTGTTAATGgtcaggtaatttaattacagtaactcaTTTTGTACTTCTTTAAATACTGTACACAAATTCAACAGTTCTGGATCCATCAATTAAGAGAAGCAGACTAGTTCATTTATCAAGCTGATTGAACATGCTTGAGAATCAATGAACACAGACTCTGAAATTCCTGTCAAAATTTGGTGTGTATGAAATGTTGTGTCATCGCTTTGAGATGTTTTGTGATTTGATACATATAATGTTTCTAATTCTTGAAACGTTACATCCCT
>TCONS_00052964
ATGGCTTCTCCTCAGCATCTACTGTTTCACAACAGTGAAGCAAGCTGTGACTCCAGTGGCGATGGTGCCGTTTCTGTGCGCGTCAAACCGCACAAACAGCAGCGTGGGAGTTTTGGTGCCAGTGCCATGTGCAACCTCATCGGGGGCTCCAAACACTGCAAGTACAGCATCTCCTCCAGCTGTAGCTCTGGCGAATCTGCCATCCGCAAGCCGGTGGTCAAAAGCCTGCGCACTCAGAGGAAGATGCCACAGCTGTTCGAGAGGTCAGCTGGACACTTCTGGAACCCCAAGTTTGACTCCAACATCCTGGAGGAAGCCTGTCGCGAGCGCTGCTTCCCGCAGACGCGGAGGCGCTTCCGCTGTGTGTTGTTCTACCTGGCGGCTGCCAGCCTCCTTTGGGGGTTGTTCTTCATGGCTAACGCTAATCGATGTGAACGAACTGCCTTCTTATTGCCCACAGCCTCCTTCCTGCTCCTCTGTTGTGTCCTGTTTGTCTTCACGTTCACTCGCTTTTATGTTCACTGCTACAACCAAGCCTCCCTGTTGCTCATAGTCGTGACCTTTGCACTCACGCTTGCACCTCAGATCCAAACATCAGGCTTTAGTGACTTTAACGCTCCTCCTTTGAAGGATGAAGGTGACGACTTCAGTGGTGCCGAGGATAAAAATCTGACATTCGAAGCCACCCAAAGTGGAGATCTAGTTACTCCGTGTTTGTCCCCAGTTGGTACCTTTTCTCTAGGTATGGAGGTGCTTTCGTTGCTCTACAGTTTCCTCCATGTCCGATTTTATGCTTCACTACTGCTTGGCCTGATCTACTCGGTGCTTTTTGAGACTCTTGGATGGATGCACTTGATTCAAGACAACAGGTGGAGCAACTCCACCGAGGAGCATTTGGAGACACTTTACTGGCTGATCCCTGGACGGGCTATTTTGCATGTGTGCGCCCACATCATCGGCATTCACCTTTTCATCATGTCTGAAGTGCGTTCCCGCAGCACGTTCCTCAAGGTCGGGCAGGCTATCATGCACGGGAAAGACTTGGAGGTGGAAAAGGCACTGAAGGAGCGGATGATCCACTCGGTGATGCCTCGTAGGGTGGCTGATGAGCTTATGAAGCAGGGCGATGACGATAATGATAATTCGGTTAAACGCTACTCGACGGGAGCAGCGATTGCGGGAGCTTCCAGCCCCAAGAGCGCTAAACGCAAGAAGACTTCGATTCCTCGGGGGCAGATCATCTTTCGGCCTTTCAACATGAAGCGCATGGAGCCGGTCAGTATACTGTTTGCTGACATAGTGGGATTCACTAAGATGAGCGCCAACAAGTCAGCTCATGCCCTTGTGGGACTTCTTAATGACTTATTTGGGCGATTTGATCGCCTGTGCGAGCTTACATGCTGCGAGAAGATCAGCACTCTTGGGGATTGTTATTATTGCGTGGCAGGTTGTCCCGAGCCAAGAGAGGACCATGCCTACTGTTGTGTGGAAATGGGGCTTGGGATGATTCAGGCCATTGAGCAGTTCTGCCAGGAAAAAAAGGAGATGGTGAACATGCGGGTTGGCATCCATACAGGCACCGTGCTCTGTGGCATCCTCGGCATGAAGCGCTTCAAATTCGATGTCTGGTCCAATGATGTAAACCTAGCCAATCTCATGGAGCAGTTGGGTGTTGCCGGGAAGGTTCACCTGTCGGAGGCTACGGACAAGTTCTTGGATGACCGCTACTTGCGAGAAGATGGCCGAGTCACAGAAAGGATTGGACCGAGTGTGGTTGCAGATCAACTTAAAGAAAAAGTAAGGGGCCGATCAACACCGAATGTGCTTTTTGCTTTGAGAGGC

Function

GO:

id name namespace
GO:0030504 inorganic diphosphate transmembrane transporter activity molecular_function
GO:0015114 phosphate ion transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052445 False 608 lncRNA 0.39 2 12111160 12112099
TCONS_00052964 True 1842 lncRNA 0.52 2 12111780 12113782

Neighbor

gene id symbol gene type direction distance location
XLOC_026170 cfap70 coding downstream 84419 11977271 ~ 12026741 (-)
XLOC_026169 hmox2b coding downstream 138644 11958592 ~ 11972516 (-)
XLOC_026168 coro7 coding downstream 188447 11867701 ~ 11922713 (-)
XLOC_026167 FOXK2 coding downstream 282954 11779689 ~ 11828206 (-)
XLOC_026166 NA coding downstream 393311 11703909 ~ 11717849 (-)
XLOC_026172 srl coding upstream 14335 12128117 ~ 12187245 (-)
XLOC_026173 tfap4 coding upstream 89200 12202982 ~ 12227359 (-)
XLOC_026174 pam16 coding upstream 231498 12345280 ~ 12352793 (-)
XLOC_026175 NA coding upstream 241750 12355532 ~ 12358516 (-)
XLOC_026176 coro7 coding upstream 246924 12360706 ~ 12381272 (-)
XLOC_026164 NA non-coding downstream 530440 11576654 ~ 11580720 (-)
XLOC_026163 NA non-coding downstream 601108 11491443 ~ 11510052 (-)
XLOC_026162 AL935044.3 non-coding downstream 709860 11397269 ~ 11401300 (-)
XLOC_026160 AL935044.4 non-coding downstream 748777 11358518 ~ 11362383 (-)
XLOC_026177 NA non-coding upstream 715414 12829196 ~ 12849611 (-)
XLOC_026182 NA non-coding upstream 1017295 13131077 ~ 13131324 (-)
XLOC_026183 NA non-coding upstream 1234436 13348218 ~ 13361083 (-)
XLOC_026184 NA non-coding upstream 1294328 13408110 ~ 13410057 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000208_00063286_00130616 ADCY9 coding CI01000208 null 63286 ~ 130616 (-)