XLOC_026173 (tfap4)


Basic Information

Item Value
gene id XLOC_026173
gene name tfap4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 12202982 ~ 12227359 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051083
ATAACCAATCAATGCATTCTGTATATGCACAACAGACAATACGCCCAAGGCGCgtctatttaaatacatttaaattacaacACGCAATACGCATGTAACAGTTCAAGAGGTTTTTTTAGGAGAACAAAAATGGACGATGTTTAAATACTGCTGTTGCAATTCTCCTTTGTTTACATGCAAGTCCTCCTGCTCGGCGGAAGGAGGCTTTTTGGTTGTGcagagccgtgtgtgtgtgtgtgtgtgtgtgtgtgattcctACCAGCTGTTTCCCGCCTTGAAAGACATCCGATcagctgcaaacacacacacacacacacacacagaggcagaaggagggagggaaagagagcgagcgagcgccacacacatacacacacactacgaggGAACCCCATCAGCTGGAAGAATAGAGTAACCTTACAACTCAACACTCATCTCACGCGCTCATGCCCAAAATCAGCAGGACGCGCGCGCCTCCGCTCCGTACATGAGAACGAGACCCAAAGTAACGCGTCTGTTTCTGAATCAACAACAAAAGTAGAAGAAGAAAAGAAGCCACAGAGGAGAGCCAGAGCTGGAGAGAAGAGGGGAAGCATGGAGTATTTCATGGTACCAGCTCAGAAGGTGCCCTCCTTGCAACATTTCAGGAAAACCGAGAAAGAAGTCATAGGGGGCTTGTGCAGCTTAGCAAACATTCCCCTCACGCCAGAGACGGCGCGGGACCAGGAGCGGCGCATTCGGAGGGAAATCGCCAACAGTAACGAGCGCCGTCGCATGCAGAGCATCAACGCTGGCTTCCAGTCCCTGAAAACACTCATCCCACACAGTGACGGAGAAAAACTCAGCAAGgctgCCATCTTACAGCAGACGGCCGAATACATCTTTTCTCTGGAGCAGGAGAAGACGCGACTGCTGCAACAAAACACCCAACTCAAACGCTACATACAGAAGGAGTTCAGCGGCTCGTCCCCGAAGAGGAGGCGTGCGGAGGAGAAGGACGAAGGCATCGGCTCTCCAGATATCCTGGAGGAGGAGAAGGTGGAGGATCTGCGGAGAGAGATGATCGAGCTCCGACAGCAGCTGGATAAAGAGCGCTCCGTTCGCATGATGCTGGAAGAGCAGATCCGCTCACTGGATGCTCACTTGTACCCTGAAAAGCTAAAGGTGATTGCACAGCAGGTCCAGGAACAGCATGTGCAGACACAAACCCTGCTCCGtcttcagcagcagcagcaacaggaACAGCTGGGAAAAGAGTCCAGCACTCCTGCACGCAGCCCGCTGGTGTTTTCTCCTGCCACGCCGCCTGCGCCCACTCAACACGCCACAGTAATTGTTCCTGCCCCAGCGCCGCCTCCGCCACCCCATCATGTCACCGTGGTAACCATGTGCCCCGCCTCCGTGATCAACACAGCATCCACATCACGACAGAACTTGGACACCATTGTGCAGGCTATTCAGCACATCGAAGGCACGCAGGACAGGCTGGCGGTGCCCGAGGAGGAAAAGCGTCGTGCGGTCATCGTCACCCCGGGACGAGTCCTGACAGACACCGGCGACTCCGATACCGCCTCCGACAACGAAGGATCTGAGGACTGTTAA
>TCONS_00052446
AAAAGAAGCCACAGAGGAGAGCCAGAGCTGGAGAGAAGAGGGGAAGCATGGAGTATTTCATGGTACCAGCTCAGAAGGTGCCCTCCTTGCAACATTTCAGGAAAACCGAGAAAGAAGTCATAGGGGGCTTGTGCAGGTACGTAAAAACCCCAAAAACATTGCCTTGACGTTCACATGTGTGCGATTTGTCTTTAATCGCGCGccaacagcagcagcaacagcactACTACTAGAGTAACATGCGTGCAcgatttctgtgttattgtgTACATGCGCCTCTCCAATGCTTCAACACAGCGCCTAACCCACGCGAGACTCGATTTTCTAACTCCCATTCACCTCTTAGGGGTGTATAAAAGCCCACCAGGCTGTCAGGTCACTGTTAGCGATGAAATATCTCCGCGAAATCGATGCATTTTGTGTCTAACAAACACAAACCACGTggttgcgcgcacacacacacggcacGCTGCTCACCTCGCGCGCGCGAT

Function

symbol description
tfap4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human TFAP4 (transcription factor AP-4).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko05205 Proteoglycans in cancer
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-090810-1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human TFAP4 (transcription factor AP-4).

Ensembl:

ensembl_id ENSDARG00000103923

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051083 False 1602 mRNA 0.54 7 12202982 12227359
TCONS_00052446 True 491 lncRNA 0.50 1 12226322 12226812

Neighbor

gene id symbol gene type direction distance location
XLOC_026172 srl coding downstream 15737 12128117 ~ 12187245 (-)
XLOC_026171 NA coding downstream 89200 12111160 ~ 12113782 (-)
XLOC_026170 cfap70 coding downstream 176241 11977271 ~ 12026741 (-)
XLOC_026169 hmox2b coding downstream 230466 11958592 ~ 11972516 (-)
XLOC_026168 coro7 coding downstream 280269 11867701 ~ 11922713 (-)
XLOC_026174 pam16 coding upstream 117921 12345280 ~ 12352793 (-)
XLOC_026175 NA coding upstream 128173 12355532 ~ 12358516 (-)
XLOC_026176 coro7 coding upstream 133347 12360706 ~ 12381272 (-)
XLOC_026177 NA coding upstream 601837 12829196 ~ 12849611 (-)
XLOC_026178 btbd17b coding upstream 656758 12884117 ~ 12890779 (-)
XLOC_026166 NA non-coding downstream 485133 11703909 ~ 11717849 (-)
XLOC_026164 NA non-coding downstream 622262 11576654 ~ 11580720 (-)
XLOC_026163 NA non-coding downstream 692930 11491443 ~ 11510052 (-)
XLOC_026162 AL935044.3 non-coding downstream 801682 11397269 ~ 11401300 (-)
XLOC_026182 NA non-coding upstream 903718 13131077 ~ 13131324 (-)
XLOC_026183 NA non-coding upstream 1120859 13348218 ~ 13361083 (-)
XLOC_026184 NA non-coding upstream 1180751 13408110 ~ 13410057 (-)

Expression


Co-expression Network