XLOC_026175


Basic Information

Item Value
gene id XLOC_026175
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 12355532 ~ 12358516 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052965
GtgtagtttttaacaacagatggcgttAAATGTTAGCTTATAATAGCACTTTTTGCTAAAAGCTATTTTTAACAGGGGATCGAgctaaaggctagtttttaacagcagaagGTGCTAAAGACTACTTTTTAATAGCAGTTGTCTAATATAGCGATTTTTAACAGCGGTTAGAGCtaaatgctagtttttaacagtagatggagcAAAAGGCTAGTTTATTAACAGCAGACATAGGACACTGTTAAAAACGAGtctatagcgccatctgctgataAAAATACCATTTAGCGCcatctgctttttaaaactagCCTTTAGCACCACCTGAAAGAAAGAATAGAGATGCATTTTGGAAATCTCAGAATGTTGAATCGATTTCTCAACCGATTTGTTTTTCAGCAGAGCTCTGGTAAAGATATTGTTAAAGGAAAGACACTGCAGATGAAACAACAAGAAGCTAATAGTTACCACCGTGCTTCCGGAGTTGATTGATTACATAAAGAACTGCAAACAATTGTTGTATTACAAGTTTTCTATGAGGCTATGTCTGTATATGCAAATaaggaattaattaaataaacatacatacatttaaagcACAATCATTGGATGAATTCAGGTTTAATTTACTTGCCAGATTGAAGTTAAAGGTTTTGCCAAGGGGATTTTGGGAATGTCTTTGTATCACTAGTAATGCTAACAAAAATGTTGTAGGATAAAATATAATCAGGCTAATCAATTATGAACATTAATAAACAACAGGCATGAAAATAACTGTAACAAGCTGCATTTATAACCAAAAAATCTTTGAGAATATGTATTGTACCTTAATCTACCGACAACTGATACAGTGTGACAAAAGTATGCCTTAGTTTGATGTTTCTTTACATTGACAAAGATTTAAATATAACCTGCAGTGTCTTAATATGTCTGAACTTTTTAAAGCGAAAACGTCTGtttaaatctaaatgaatgatCTGGGAACTGTTTTACACTCCTTTTTAAAATggcaaatacactacctgacaaaagtcttgttgcttatccaagttttaggaacaacaaataataacttgatcatttggtatcagaagtcacttatatgaaagtcaaagactttgactcccagagttcatcaagagtttTTGGTTTCATCTTCGATGCCCCCTCCTTCatctcaccccagacatgctcaataatgttcacttctggtgactgggatggccaatcttggagcaccttggtcttctttgctttcaggaactttaatgtggaggctgaagtatgagatggagcgctatcctgctagagagtttgccctctcctgtggtttgtaatgtaactggctgcacaaatgtcttgatacctcagcggttcactctgcagatctctcgcacacccccatactgaatgtaaccccaaaccatgatttttatttcaccaaacttgactaatttcagtgagaattttgggtctatgcgggttccaataggtcttctgcactttttgtgatgattaggatgcagttcaacaggcAATTCAGAAGAaaaatctgccacttttccaaataatcaactagaagtcattatAATTTGTTGCTTTTGCAATTGGGAtccaccacaagacttttgtcaggtaggcTACTCACTCTGTGTGTTTGCTTCTGCTTATGCTCACCAACAGTATTAACACAAATCTACTTCACAAGGGTTTTTCCTCCTAATCAGGTCTATCATGAGgcaatataatgttttttattgttattaatagaaCATGTTTACATATGCCAGGAAAGGACTCTTGTTCTGCATGTTATGGTATGGCGTGACCTCCTGTGCTTGACATGTGACCATGTGTTCTCGTATATATGAGCGGTAGGTGTTTATAGATGTTGTAATGATCTGCTAAGTGTTTTTAATCAGTGGGATAATTTTGGTATCAATCTTGATGTTTTTTGGGGAATGAATTTTTCACAGACATGTtaattgtgttcattttaatACTTTATGGGCAATAATGTTTTTCACTTTTCTTCTGAATGGAGCCAGTCTTGTGGGAATGTAcaacctcaaaataaaagcctggAAAGCTGAG

Function

GO:

id name namespace
GO:0016999 antibiotic metabolic process biological_process
GO:0072350 tricarboxylic acid metabolic process biological_process
GO:0006936 muscle contraction biological_process
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006101 citrate metabolic process biological_process
GO:0009060 aerobic respiration biological_process
GO:0043624 cellular protein complex disassembly biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0017144 drug metabolic process biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0003012 muscle system process biological_process
GO:0061061 muscle structure development biological_process
GO:0030042 actin filament depolymerization biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0044420 obsolete extracellular matrix component cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005581 collagen trimer cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052965 True 2094 lncRNA 0.36 2 12355532 12358516

Neighbor

gene id symbol gene type direction distance location
XLOC_026174 pam16 coding downstream 2739 12345280 ~ 12352793 (-)
XLOC_026173 tfap4 coding downstream 128173 12202982 ~ 12227359 (-)
XLOC_026172 srl coding downstream 168287 12128117 ~ 12187245 (-)
XLOC_026171 NA coding downstream 241750 12111160 ~ 12113782 (-)
XLOC_026170 cfap70 coding downstream 328791 11977271 ~ 12026741 (-)
XLOC_026176 coro7 coding upstream 2190 12360706 ~ 12381272 (-)
XLOC_026177 NA coding upstream 470680 12829196 ~ 12849611 (-)
XLOC_026178 btbd17b coding upstream 525601 12884117 ~ 12890779 (-)
XLOC_026179 ccdc137 coding upstream 534625 12893141 ~ 12903609 (-)
XLOC_026180 pdgfab coding upstream 566414 12924930 ~ 12970428 (-)
XLOC_026166 NA non-coding downstream 637683 11703909 ~ 11717849 (-)
XLOC_026164 NA non-coding downstream 774812 11576654 ~ 11580720 (-)
XLOC_026163 NA non-coding downstream 845480 11491443 ~ 11510052 (-)
XLOC_026162 AL935044.3 non-coding downstream 954232 11397269 ~ 11401300 (-)
XLOC_026182 NA non-coding upstream 772561 13131077 ~ 13131324 (-)
XLOC_026183 NA non-coding upstream 989702 13348218 ~ 13361083 (-)
XLOC_026184 NA non-coding upstream 1049594 13408110 ~ 13410057 (-)
XLOC_026193 NA non-coding upstream 1801021 14159537 ~ 14198357 (-)

Expression


Co-expression Network