G699662


Basic Information

Item Value
gene id G699662
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 34255945 ~ 34257254 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU796126
GCACAGGTTCAAATCAAAGACAGCTCcttacaaaaacaaacaaacaaccaaacAAATAATTAGTGTCAAGACGAGCACAACTGAACAACTAAGCCTATCGTGCGTTTTACATCATAATAAACATTACTAATATGTGTACTAATTCTATAATGCTTCTGAACCAAAACAACATGTATAGGCCTAGTCATATGTGCAGTGTGTCAAGAGTTTGTAGCAGCATCTGAATACTTCTTCACTGTGTGGACACTTCACGCGCCTAATGGTTATCTTTAAGTTAAACGTGGACCACCACTGTTCTGCTGGAATTCTCCAAATCATTCCGGTATTGCTCGAGCCAGTTCCTAAGCTCTGATATCCGGTAGCCCTCCGGTCCCCTGCCCCCCTGATACACGACCCGCTCATCCCTCAGGATATAAAGTCTCTCAAAATAGGCTCCGTAAGCCGCGTTGGACGAGTTGTCCATAGTATCCACCACCACACTGCTGCAGGGAACCTCCGAGTGCATCAGCTGAGCGGCTTTCAGTCTGTCCTCCAGACAGCAGTGCTTGGGGATCTGGTATGGCGCGTCGGAGCTCACCCAGCCGTCCGAGGGATGCGCCTCCTCGATATATACAAGCAGGGAGTCGGCGATGTCCGCATACTGGCTCGCGACGCGCTGAAACGCAGCCAGGCGCGTCATGAACGGTGGTCAGGAGCAACTGCCGAAGTTGAGGATGAGAGGTCTCCTCCCTTTCACATAGTCTAGGACCCTGACCCTGCGCCGCTCCTGCAGCTGCACAACCTCAGTGTTGGGCGCGATAAGTCCAAGGTGCGCGGATTTGAAAAAGTCTAATTTCTGCCCGTACCACACGGCCCTGAGCGACTCCAGGGTGAACATCTTGTTGGAGTCGGAGACGCAGACAGGCGGGTCTTCGGGGCTGCTGCCCTCCATCTTCAGCAGCACTTTCCTCCTGATACACAGGACGTCCAGGAGACACAGCATCAGCGCTGCCAGGAGGAACCGGGGCAGCAGAATCAGACATAGAGCTGTGTGTTTCAGGGCCAGCACCGTCAGGACACCTGCAGACTTCTGCATCTCGCCCTGCCGATGATGTCTGGCCGGCAATGTGCAGCAGGATGTGAATGAAAAACAACCCACCTCCACAGCTCGTGCCGCCCTCTCACATGGCGGGGATTACCTCCCgtcaactgagagagagagatggatagaggagggagagagag

Function

NR:

description
TPA_inf: deiodinase 3a

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU796126 True 1224 lncRNA 0.53 2 34255945 34257254

Neighbor

gene id symbol gene type direction distance location
LOC110529847 LOC106571593 coding upstream 37266 34178297 ~ 34218679 (+)
LOC110529844 hs90a coding upstream 78336 34167070 ~ 34177609 (+)
LOC110529845 LOC106571588 coding upstream 89231 34158968 ~ 34166714 (+)
LOC110529838 LOC106571596 coding upstream 300750 33936526 ~ 33955195 (+)
LOC118965511 LOC106571597 coding upstream 326494 33920251 ~ 33930473 (+)
LOC110529842 LOC106571600 coding downstream 117482 34374736 ~ 34387036 (+)
LOC110529849 NA coding downstream 296538 34553792 ~ 34557596 (+)
LOC110529233 LOC106571582 coding downstream 542061 34799315 ~ 35163860 (+)
LOC100653435 fkbp3 coding downstream 1037773 35295027 ~ 35318460 (+)
LOC110529852 arf6 coding downstream 1079725 35336979 ~ 35340123 (+)
G699660 NA non-coding upstream 1846 34253732 ~ 34254099 (+)
G699656 NA non-coding upstream 7038 34248642 ~ 34248907 (+)
G699655 NA non-coding upstream 9699 34245820 ~ 34246246 (+)
G699654 NA non-coding upstream 10780 34244850 ~ 34245165 (+)
G699643 NA non-coding upstream 31297 34224443 ~ 34224648 (+)
G699664 NA non-coding downstream 2618 34259872 ~ 34261209 (+)
G699675 NA non-coding downstream 15121 34272375 ~ 34272784 (+)
G699727 NA non-coding downstream 113655 34370909 ~ 34371137 (+)
G699724 NA non-coding downstream 135130 34392384 ~ 34392992 (+)
G699725 NA non-coding downstream 135827 34393081 ~ 34393898 (+)
G699605 NA other upstream 127644 34127593 ~ 34128301 (+)
G694036 NA other upstream 4463198 29790997 ~ 29792747 (+)
cdca4 LOC106571684 other upstream 5317672 28930668 ~ 28939888 (+)
G693207 NA other upstream 5550193 28704850 ~ 28705752 (+)
btbd7 btbd7 other upstream 5697572 28495104 ~ 28605625 (+)
LOC110529856 LOC106571576 other downstream 1197594 35454437 ~ 35462086 (+)
G700685 NA other downstream 1355910 35613164 ~ 35614666 (+)
G700864 NA other downstream 1646795 35904049 ~ 35904698 (+)
G702415 NA other downstream 2443184 36700438 ~ 36700739 (+)
G702687 NA other downstream 2801091 37058345 ~ 37059223 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_08654610_08655443 NA coding CI01000029 null 8652582 ~ 8656550 (+)