XLOC_026181 (prkar1b)


Basic Information

Item Value
gene id XLOC_026181
gene name prkar1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 13004657 ~ 13147310 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051094
TCTTTCACAGGTGATGAAGGAGACAACTTCTATGTGATTGACCAAGGAGAAGTGGATGTATATGTGAATGGTGAATGGGTGACTAGTATTGGAGAGGGTGGTAGTTTTGGAGAACTGGCTCTGATATACGGGACTCCTCGAGCTGCTACTGTGAAGGCCAAGACTGACCTGAAACTCTGGGGCATCGACAGAGACAGCTACCGGCGCATCCTCATgGGAAGCACGCTGAGGAAGAGGAAGATGTATGAGGAGTTCCTCAGCAAGGTGTCTATACTCGAATCGCTGGATAAGTGGGAGAGGCTGACGGTGGCTGATGCTCTGGAGCCTGTGCAGTTTGAAGACGGAGAGAAGATCGTAGTGCAGGGAGAGCCAGGAGATGATTTCTTCATCAtaacagagGGTACGGCGTCTGTTCTGCAGCGCAGGTCTGATAACGAGGAATACGTTGAAGTGGGCCGCCTGGGTCCATCAGACTACTTCGGTGAGATAGCGCTGCTGCTGAACAGACCCCGTGCAGCAACAGTCGTGGCCAGAGGTCCACTCAAGTGTGTGAAGTTGGACCGTCCGCGTTTCGAGCGCGTCCTCGGGCCCTGCTCTGAGATCCTCAAGAGGAACATCCAGAGATATAACAGCTTCATTTCTCTCACAGTCTAACCCGGCCGTCTGAAACGCGTTGCCGTCAGGTTATCCGGGTGCCTGGTTGCATAAAATAACGTGACGTTCTCCACCAGTTCTGCTTAAATCATTAGCTTCAGTATTGCTGAGTTGTTCAGAATGGATTCAGCAGTAGATAATAAAAACGACTTCTTTTATGCAGCCAAGcattcagtttttacttttttgccAGAAGCACAAGTGCTCCAcctgcttttttttcccctttgtgTGATTTTTCTTACTGTATGTGCACTTTGAATTTGACCTATGTCGCCACAAAGCTTTATTTCTGCAGATTAGGAGAGGAAATGAGGTGCCCATATGGACTGATAAGAAACATCTTCATGTGGCATGTGAAAAAAGTCCTACAAAATGTGATGCATGCAGACCAGAGATGCATTTTGTTCACTTGCCATTCAGATTCTGCGTCGAAGAGGAAGGTAACAGTACAGATGGCACAAgtatataaatatgtttacacAGAGGAAggagtgtttatgtttttgttcTTCAGCTTCTGCCTTTTAGCTGTGTGTTTTTTGCGTGCCGTGTTTAATCCTGCGTGGGTCAGAATTGGAGATCCTCTGTTTATTGAAATCTGTTTATTGAAAGCGATTTTGCCGTTCTATATCTTCTTGGCTGTTTCATCCACCCTGAACATTCTGAGTTGTGCTTCTACAGCTGGAATTAATGGGAGGGGGTTTGTTACATTTTAAGACACGAGTTTTAATATAGAACTGCTATAAAAGCGGTTTTCATTGGGAGTCTTAA
>TCONS_00051095
AAGCAACATCCCAGAGCGCGAGTCTCGCATCTCCGCCTCATAACGCAGTGATAGAAGATAAGATGGCCACCTCCTCCTCCAATCTGGAAGAAGATGAAAGTCTGAAAGGCTGTGAGGTTTTTGTGCAGAAACACAACATACAGCAGATCCTCAAAGAGTGCATCGTCAACCTGTGCATCGCCAAGCCCGAGCGGCCTATGAAGTTCCTGCGGGAACACTTCGAGAAGCTGGAGAAGGAAGAATGCAAGCAGATCATGGCCCGACAGAAGTCCAACTCGCAGTCGGACTCTCATGATGATGAAGTGTCTCCTCCTCCTCCAAACCCTGTGGTGAAGGCCCGGCGCCGGAGAGGTGGTGTCAGCGCTGAGGTCTACACGGAGGAGGATGCCGTCAGCTACGTCAGAAAGGTCATTCCGAAGGACTACAAGACGATGACGGCCCTGGCCAAAGCCATCTCTAAGAACGTGCTGTTCGCCCACCTGGATGACAATGAGAGAAGTGACATATTTGATGCCATGTTCCCGGTCACACACATCGCTGGTGAAACAGTCATTCAACAAGGTGATGAAGGAGACAACTTCTATGTGATTGACCAAGGAGAAGTGGATGTATATGTGAATGGTGAATGGGTGACTAGTATTGGAGAGGGTGGTAGTTTTGGAGAACTGGCTCTGATATACGGGACTCCTCGAGCTGCTACTGTGAAGGCCAAGACTGACCTGAAACTCTGGGGCATCGACAGAGACAGCTACCGGCGCATCCTCATgGGAAGCACGCTGAGGAAGAGGAAGATGTATGAGGAGTTCCTCAGCAAGGTGTCTATACTCGAATCGCTGGATAAGTGGGAGAGGCTGACGGTGGCTGATGCTCTGGAGCCTGTGCAGTTTGAAGACGGAGAGAAGATCGTAGTGCAGGGAGAGCCAGGAGATGATTTCTTCATCAtaacagagGGTACGGCGTCTGTTCTGCAGCGCAGGTCTGATAACGAGGAATACGTTGAAGTGGGCCGCCTGGGTCCATCAGACTACTTCGGTGAGATAGCGCTGCTGCTGAACAGACCCCGTGCAGCAACAGTCGTGGCCAGAGGTCCACTCAAGTGTGTGAAGTTGGACCGTCCGCGTTTCGAGCGCGTCCTCGGGCCCTGCTCTGAGATCCTCAAGAGGAACATCCAGAGATATAACAGCTTCATTTCTCTCACAGTCTAACCCGGCCGTCTGAAACGCGTTGCCGTCAGGTTATCCGGGTGCCTGGTTGCATAAAATAACGTGACGTTCTCCACCAGTTCTGCTTAAATCATTAGCTTCAGTATTGCTGAGTTGTTCAGAATGGATTCAGCAGTAGATAATAAAAACGACTTCTTTTATGC
>TCONS_00051096
GCAGCAGTGATAGAAGATAAGATGGCCACCTCCTCCTCCAATCTGGAAGAAGATGAAAGTCTGAAAGGCTGTGAGGTTTTTGTGCAGAAACACAACATACAGCAGATCCTCAAAGAGTGCATCGTCAACCTGTGCATCGCCAAGCCCGAGCGGCCTATGAAGTTCCTGCGGGAACACTTCGAGAAGCTGGAGAAGGAAGAATGCAAGCAGATCATGGCCCGACAGAAGTCCAACTCGCAGTCGGACTCTCATGATGATGAAGTGTCTCCTCCTCCTCCAAACCCTGTGGTGAAGGCCCGGCGCCGGAGAGGTGGTGTCAGCGCTGAGGTCTACACGGAGGAGGATGCCGTCAGCTACGTCAGAAAGGTCATTCCGAAGGACTACAAGACGATGACGGCCCTGGCCAAAGCCATCTCTAAGAACGTGCTGTTCGCCCACCTGGATGACAATGAGAGAAGTGACATATTTGATGCCATGTTCCCGGTCACACACATCGCTGGTGAAACAGTCATTCAACAAGGTGATGAAGGAGACAACTTCTATGTGATTGACCAAGGAGAAGTGGATGTATATGTGAATGGTGAATGGGTGACTAGTATTGGAGAGGGTGGTAGTTTTGGAGAACTGGCTCTGATATACGGGACTCCTCGAGCTGCTACTGTGAAGGCCAAGACTGACCTGAAACTCTGGGGCATCGACAGAGACAGCTACCGGCGCATCCTCATgGGAAGCACGCTGAGGAAGAGGAAGATGTATGAGGAGTTCCTCAGCAAGGTGTCTATACTCGAATCGCTGGATAAGTGGGAGAGGCTGACGGTGGCTGATGCTCTGGAGCCTGTGCAGTTTGAAGACGGAGAGAAGATCGTAGTGCAGGGAGAGCCAGGAGATGATTTCTTCATCAtaacagagGGTACGGCGTCTGTTCTGCAGCGCAGGTCTGATAACGAGGAATACGTTGAAGTGGGCCGCCTGGGTCCATCAGACTACTTCGGTGAGATAGCGCTGCTGCTGAACAGACCCCGTGCAGCAACAGTCGTGGCCAGAGGTCCACTCAAGTGTGTGAAGTTGGACCGTCCGCGTTTCGAGCGCGTCCTCGGGCCCTGCTCTGAGATCCTCAAGAGGAACATCCAGAGATATAACAGCTTCATTTCTCTCACAGTCTAACCCGGCCGTCTGAAACGC

Function

symbol description
prkar1b Predicted to enable cAMP binding activity; cAMP-dependent protein kinase inhibitor activity; and protein kinase A catalytic subunit binding activity. Predicted to be involved in negative regulation of cAMP-dependent protein kinase activity. Predicted to act upstream of or within regulation of protein phosphorylation. Predicted to be located in plasma membrane. Predicted to be part of cAMP-dependent protein kinase complex. Predicted to be active in cytoplasm. Orthologous to human PRKAR1B (protein kinase cAMP-dependent type I regulatory subunit beta).

GO:

id name namespace
GO:0043949 regulation of cAMP-mediated signaling biological_process
GO:0010738 regulation of protein kinase A signaling biological_process
GO:0001932 regulation of protein phosphorylation biological_process
GO:0005952 cAMP-dependent protein kinase complex cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0030552 cAMP binding molecular_function
GO:0008603 cAMP-dependent protein kinase regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-580 Predicted to enable cAMP binding activity; cAMP-dependent protein kinase inhibitor activity; and protein kinase A catalytic subunit binding activity. Predicted to be involved in negative regulation of cAMP-dependent protein kinase activity. Predicted to act upstream of or within regulation of protein phosphorylation. Predicted to be located in plasma membrane. Predicted to be part of cAMP-dependent protein kinase complex. Predicted to be active in cytoplasm. Orthologous to human PRKAR1B (protein kinase cAMP-dependent type I regulatory subunit beta).

Ensembl:

ensembl_id ENSDARG00000103800

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051094 False 1428 mRNA 0.46 6 13004657 13068189
TCONS_00051095 False 1366 mRNA 0.52 11 13005270 13147310
TCONS_00051096 True 1182 mRNA 0.53 10 13005413 13146631

Neighbor

gene id symbol gene type direction distance location
XLOC_026180 pdgfab coding downstream 34229 12924930 ~ 12970428 (-)
XLOC_026179 ccdc137 coding downstream 101048 12893141 ~ 12903609 (-)
XLOC_026178 btbd17b coding downstream 113878 12884117 ~ 12890779 (-)
XLOC_026177 NA coding downstream 155046 12829196 ~ 12849611 (-)
XLOC_026176 coro7 coding downstream 623385 12360706 ~ 12381272 (-)
XLOC_026183 NA coding upstream 200908 13348218 ~ 13361083 (-)
XLOC_026184 NA coding upstream 260800 13408110 ~ 13410057 (-)
XLOC_026185 dhps coding upstream 276625 13423935 ~ 13437817 (-)
XLOC_026186 fbxw9 coding upstream 298462 13445772 ~ 13461361 (-)
XLOC_026187 slc25a19 coding upstream 340450 13487760 ~ 13509283 (-)
XLOC_026175 NA non-coding downstream 646141 12355532 ~ 12358516 (-)
XLOC_026171 NA non-coding downstream 890875 12111160 ~ 12113782 (-)
XLOC_026166 NA non-coding downstream 1286808 11703909 ~ 11717849 (-)
XLOC_026164 NA non-coding downstream 1423937 11576654 ~ 11580720 (-)
XLOC_026193 NA non-coding upstream 1012227 14159537 ~ 14198357 (-)
XLOC_026194 NA non-coding upstream 1013216 14160526 ~ 14199783 (-)
XLOC_026195 NA non-coding upstream 1022990 14170300 ~ 14184139 (-)

Expression


Co-expression Network