XLOC_026183


Basic Information

Item Value
gene id XLOC_026183
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 13348218 ~ 13361083 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052967
GGAGTTTTAGACTTATAGTTTCAGTTTTCGTTTACAaaaataacctagcaaccaaggCCTGGGCTTGTTGTAACCTACCACAAAAGCTGAAGGCCAGTTGTTCATAGTGAAACAGTGAAATTGCTGAACCCTTTACGACGTGACTCATAGAGTGAAATATTATTGTCACCTAAAAGTCGAGTTGTTTGGCCGGTAAACTGAGGTGTGAAGCAGCAGGGTGTGACCGGTCCCTTCCCGCGGTCTCAAACTCTTGCTCGGCCACTGACCGGCCGGTTTTCCAGTCTCTGTCGTCGAGCTCGTGTCCTTATTTGGCTCTGGTTGAGTGAATGGAGAACAGAGAGAGTTTCCTCCTGACTGTGACTCACTGGTGACTCACGCGCATGCTAACAAAACACTGCGTCGCCATGGGGACGTGCGCCGACTCCCGCCCTTCGGCCAGTTCCCGCCATTCACCACCGAGAGTATGGCAGACAGAAGGAGAGCTTCAGAGAACATGGTGGGGATCCTGTCCGTCATTGCTGTGATGATGAACCACATCTGCGGTTTCTCTGCAAGCAAGTGTGAACTTGAGGAATTCATGCAACCACTAAAACTCTTGCCGCAGGTCCTTCAGTCTTAAGCACATTTCTCAGGGACTACATGAGGGTGTGATGGATGCAAAGACAATTCCTGTAGTGTCTCAGAATGACTGAACGTCTGCAGTTGACATGAAAAAGCGAACGAAAGTGAGGTGTGAATGGAGGAGGGTTTCTGTGACATATGAGGAAATTGAGAAAACGGAAGAAATATGGGGGAAAATACCTCACGGGATGAAAGCGGgaaagaactgtaaaatacgggagaatcccaggaaaaacaggagggttcaCAGGTATGCCTAAGTTAGAAGCAACCGTCTGCCATTacagttttgaatctgccactatgctgacacataggcgtttatagctccaccctcttttgaaaagagctcaatctcatttaaatttaaagtgaccaGAATGACACTatttggatcaaagccttaaaggggccgttttaaaaagttattaaacattatttgtgtctTATTTCAAGCTGAAGCTTCACAAACACACtccagggacatcagag
>TCONS_00052448
GCCAAATCTTTAAAAATGGTCAAATAAAATATAAGGATGTTTGAATATATGGACGTTTTGTCATTTCTAAAGGGGATCCTGTCCGTCATTGCTGTGATGATGAACCACATCTGCGGTTTCTCTGCAAGCAAGTGTGAACTTGAGGAATTCATGCAACCACTAAAACTCTTGCCGCAGGTCCTTCAGTCTTAAGCACATTTCTCAGGGACTACATGAGGTATTTATGCTGTTCAGCCAAAGACATAATTAAAGGGAAATATGTAAAAGGGGAaatgaaaattctctcatcatttaatCACTTGTCACAAAGCTAAACATCTTCTTGTtcaacacaaaaaagatattttgaaaaatgctggaaaccggtcactattgacttccatagtatttgtttttgttatggGTGTCATTTCTTTGGAacgttcttcagaatatcttcatttgtgttcaactgtTTGAAGTTTAGAAGCACTTGAATGTCCCTAGTTTCACgttaaaactgaaaaaagagCGACCCTTTTCAAAAAGGCCGTATGTGGCATTAATCAGGTCACAGTGGTTCACTGTGACATCAGGTTTTTGATGTTGGTCTGCATTATCTTTTATGATAAGGTTTCTGTATAAAATCTGTCCCGAGTGCAAACAGACACTCCAAATATCTTTTATTGCTCATCTAGGGTGTGATGGATGCAAAGACAATTCCTGTAGTGTCTCAGAATGACTGAACGTCTGCAGTTGACATGAAAAAGCGAACGAAAGTGAGGTGTGAATGGAGGAGGGTTTCTGTGACATATGAGGTGAGAAGTGCAGAATATGCAGAGATACCGCTGCTGCTATTGCAAAGAAAGAAAAGTATTATTATTGCGGGCTGTTAGTAGCATTATTTATACTAATGCCTTTGAATGTAGTCAGGAATTTCATTGTAAAACccagggatatttcacccaaactTGAATATTTTCCTCTCCCTCTTGTGGCACCaaattgagtttctttcttgtgttgaacacacaTGATACTTTGAAGAacgctgtaaacctgtaaccattgacttccatataaacaaatattatggaagtcaatggtaacaggttattaacatttttcaaaatatcttaatttttacTCAACAGAATTAAGTAACCCATAAAGCTCAGTCATTTTTGATTGAACTTTCTTTAAGAGTCATTTTGATGTAag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052967 False 1113 lncRNA 0.46 5 13348218 13361083
TCONS_00052448 True 1200 lncRNA 0.36 2 13355442 13358850

Neighbor

gene id symbol gene type direction distance location
XLOC_026181 prkar1b coding downstream 200908 13004657 ~ 13147310 (-)
XLOC_026182 NA coding downstream 216894 13131077 ~ 13131324 (-)
XLOC_026180 pdgfab coding downstream 377790 12924930 ~ 12970428 (-)
XLOC_026179 ccdc137 coding downstream 444609 12893141 ~ 12903609 (-)
XLOC_026178 btbd17b coding downstream 457439 12884117 ~ 12890779 (-)
XLOC_026184 NA coding upstream 47027 13408110 ~ 13410057 (-)
XLOC_026185 dhps coding upstream 62852 13423935 ~ 13437817 (-)
XLOC_026186 fbxw9 coding upstream 84689 13445772 ~ 13461361 (-)
XLOC_026187 slc25a19 coding upstream 126677 13487760 ~ 13509283 (-)
XLOC_026188 amdhd2 coding upstream 162690 13523773 ~ 13546610 (-)
XLOC_026177 NA non-coding downstream 498607 12829196 ~ 12849611 (-)
XLOC_026175 NA non-coding downstream 989702 12355532 ~ 12358516 (-)
XLOC_026171 NA non-coding downstream 1234436 12111160 ~ 12113782 (-)
XLOC_026166 NA non-coding downstream 1630369 11703909 ~ 11717849 (-)
XLOC_026193 NA non-coding upstream 798454 14159537 ~ 14198357 (-)
XLOC_026194 NA non-coding upstream 799443 14160526 ~ 14199783 (-)
XLOC_026195 NA non-coding upstream 809217 14170300 ~ 14184139 (-)
XLOC_026196 NA non-coding upstream 814879 14175962 ~ 14178936 (-)

Expression


Co-expression Network