XLOC_002619


Basic Information

Item Value
gene id XLOC_002619
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 9646362 ~ 9661692 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006003
tgcaaactccacagagaaatgccaactgacccagccgaggctcaaaccagcgaccttcttgctgttcaCTGTGCCATCGTGACAAGTATCTTACAGCTTGATTATATTCCGATTGATCTACTGAAAGCATATGGTCtgtttaaaaggcacctattatgcagaaatcacatTTTAAGGTCTTCAAAGTAAGTAAAATGCAGCAAAGTAGTCCACAGCCACGTTATACCACAGTGCACCAGCAGATGTCATgcttattcacaaaaaaattgcaTCCTCAGGATAAAAAGAGTCTGAACACTCAAGTGATGATGTAACTGTGTTTATTATCTTGGCATGCAACTACATGTCATGACCTTTAGATTCATCTCACAAGCTTGCCCTACATGTCAGAGCAAAGCTTAGCCAAGATACAAAAGCAATAACATACAAACAAACCCAAACGGTAAGAATTGACTGTGCGTTGGCTACATTTCTATATATTCTTCCTTGCATTGCCACAAGCAAAAGGGATATCTTTGCCCGGTGgtgtttaaaaagaaacaaaatgcaaaataaataatttctactaTTATTTCATCAAAAGATATTAGTTCCTGACTTTAAGAATCGTTCTCTCTGTGGTCATAAATAGCCTCATATCTCTGATTATATATcataaaaatgtgcagtatgtcCATCAAATGATGGCTCTGGTTGTATAAAATGACGGATGCCCATCTTCTATTCATTTACAATTGAATCGAACAATAGATTTGCAAATAAAATGTCTAATACAGACGTAAAAATATCCAACACATCAGTTCGTTTTTTGCAGTTGCGCACAGGACAGAAACAAGCATCATCACAACCAAACACGTCCCGTCCAATTATAACAGCCAAGtaaatttttaaaattcaaatgcaaacaaaactgacatttccaAGGGAAAAAGAAAGAATTATGGATATAAAATCCTGATAGAAATCCATAAGAGCAGACAGTAAGTGCTATAGGAAGTGAGTAAAAATGCGAGATACAGTGCAGGACACTCACAGCGCTGGGTGTTGTGTGACACAACTACACAATCATACTTCCTTTGCCAAAGAATATCTTTGCCAAAGGCAGCATGCATGATACAGGGCTGAGCTGGGCAGATAAACGAGTCAAACATGTACTAATAAGGCTTTGCTGCGTCAAAATGAgcaaaaaaggaaacaaatgacatttattttgaaGGCAATTTGACAGCTAGTGAGAAAATGTAGATAAACTCTCATTGTTACCAACCCAGCTCCAACAGTTGTAACCTCTTATATCAGCTGAGGCCAAACTAATAGTAAAAAAAGTGAACCACAAATAAGGAAGAAATTCTCTACATGTAAAAACATATCAAGAAGGTGTTGCGATTTCACACGCTAggacagaaaaaaaatgaacacattttgcTCGAAAGCATTTCATAAAAAATGTCTTTGCTGGAAGGTGCTGCTGTAACATCCCCTGTCGAAAAACACTCGCAGGAGGCAAAATAAGATTTAGCAAGATGGCGCTTAAACAAAGACCAGGAAGATTTCACTTCACATTACTCATTTAAGTGGAAAAACAATTATAccaccataaaaaaaaacatgattaacaGTCTTAAGTGACAAAGCATTCATATTTAGAACTTCATATCATAAAGACTTCcatacacaaatacaaacacacactagtgttggtggtttatgaggactcaatgtattttatactgtaaaaacggCTTATTATATGGCCTCATCCTAcaactaaacccaaccctcaaatgttgaatgtgaaaaacacatttgattataaacagtttttaattgaGGACACAAGGCATGTTCTTATAAACCAACACTGTACTACCAAGGTCAGACTCATTTATGTCCTCGTAAATCACCAAAACCAATACACACTTAACTGGTctgaaaatacaattaacaaaaggacaaatcAGCCActgatgaaaaataaacaaaacaaaaatattcctGCCATTACTTTAAACACTGAACCATCTAAATGTTATTTGAAATAGGACCGTTTATTCTGTTACACTGAGTTTGCACAAAACTACATTAAAACACCAGACATCTGTGTGTTATTGTGATGTTTTCCTCTCTATTTAATTATAGCATGTTAATCAAGCAGGAAATAATCCTGGTAAACCTGTAATGGATTCTATAGGGTTGATAAAACTAAAATCTGATATAAAATATTTCAGTTACAACTTCATGGAAGTTAGCaatgttttgtaataaaataaggGAAAACGGGAATTTTgggagggaaaaataaacaaaacttaggcaatcttgaaaaaaaaaaacttaggcaAGCAATCCCAATTCTCCCCGTTagtccttccccttacccctactgTACCTCTCGTTTTGCGCATTCATATAAAAGGgttggggtgtcccaattctctttagtttgAAGTTTAGGGCTAAGAGGAAGAGCTAGATACCCCttaaaacagagatttttcaggaccacactcgaaaccaaggggtacgaaaatCTCCCAGAATACATGGCTGTACACCATTTCTTTGGGTAAATTTTGAAGACCTTTCCTTCACGTTTCAagagccaaggggaaggggtaggggtacaaaaatagaattgggatggGGCCTTAGTTTAATTCCTGAAAAGAAAGCTACAGAAATAAACAGAAGCAATGAAAACTGAGGTGACCTTTTGACCACTGTAAACAACAAATGGGAACTGTCACTATGATCAGTGTTTCATAAACACTAAACAATACCACATCCTCAAGCAAGACCAAAGTGAAATTCTGTTTTGATGCTTGTTGATTGTAGCTGTAACaaaacagttcaccaaaaaatgaaaattaaaactgACCAAAATTTGGTGTTGTAGAACTTAAGAATGAAGTTAGTGCAAGAACATGATCACTTTCATACTTTGTTGTCTTTTGTCTTGACTtgaattttacttatttatttatttatttaattttatttatttgtctggaCTAGGCCCTCTTCTGGTGTCGGTCTTGACTCAAGACTTTTTCTTAATCTCACTAAGTCTCGACTAAGAATAACTCATCTCTTTTGAAACTCATTCTCGTCTTTTTTCAGTTCTTGGTCTTGAAGAAGCATCTCTGTTTTAGAGATAGTCCTAACTTAAGATTTATCTCTCTTCTGATCTTTGTCTGGACTCATTTTCTATGCATTCTAGCCTTTATCTTGACTCTGACTCTACTTCTGAATTCTGTGTTGACTCAGACTAGTCCCTATTCTGATCTTGGTCTTGACTGAGGGGGGATTCCATTGTGAAGGGTTCATCTAGGGATGAGCGATttagcctaaaatcaaaatcttgattaattgaacatttttactCAGTTACGATTAacaaacgattattttatttatttatggaattttttttttgtcctcataGTTTACTGACAAATTTGATATGCCGTCTAcaggcatctctggcgcagcttccaatcatcgtcaatgtagtgcaaagcaAGGCTCAAGAATGAATTcatcgtcctacttgaccagagatcagatgtggttGCAAAGTggccgcagaagtataaatcagccacaACCTTTAACAAAGTGGGCcacgtagggaaagtaattgaaaaaatcgtccttgaaaaatttgattgattataggttctgaaagtcgattttgattacttttcgattaattgcccagcccaaGGGATTAGGCCAGTTTTGACCATTTCGGTTTGAAATTAAACTTCAATATGGCTGCCttgattttattacatttattgccCTTTGAAGGGCAATAGATCTCGTCAAGAATGCACCTTAAGACTCATCCAGTCTTTGTTATGACTCAAGACTAGTCAAAACTTCTTGTCTAAAGTTCATTGCACACAAAACAGTCCAAAATAGTCAGAAATGGTTTGATTTTTAGTTTTTCATATCCGTAGAGAGCATTTTGAGAAGTGTTTTGACAAGAACCACTAAATTGAAATGACAAAATCCAAAATGCCATCACTTACAGCACTTTTGAGTGcaaaatataaagacagaatgtgtcAGATGGTTGAAAACCATTGCTTTATCCTAATGTGTATGCTGGTTGTCTTGACTCAAGACAAGTCCCTCTTCTGATCTTGGTCTTGACTGAGAGGGGCTTCCATTGTGAAAGGTTCATCATATGGAGGGTCCCTCTGAAAACATTATTCCAGGTTTGATCATTTTCAGTTTGAAATGAAACTTCATAATGGCGGCCTTGTTTTTTTTCACTATGAAGTGCCCTTTGGAGGGCAATATAAATCATCTGGGATGCACCTTAAGACTCATCCGGTATTTGTTATCACTCAAGACTAGTCAAAATGTCTTGTCTAAAGTTTATTGCACTATTCAATAATAAACTGCAATATTCAACCTTATGTTATGTAAATCGTATTTTGCCTCAGAAACTTTAATTTATCTAACTTTTTATAAcgagtttgattttttttttccgtaTCCATTTAAGGTATTTTGAGAAGTGTTTTACAAGAACCACTACATTGGAAAGACAAAATCCAAAATGCCATCACTCACAGCACTTTTGAGTGcaaaatataaagacagaatgtggcagATGGTTTAAAACCACTGCTTTAGCCTGATGCATATGCTGGTTATCTTGACTCAAAACAAGTCTCTCTTCTGGTCACATTCTTGACTCAAAAATTGTGTCTCAGAACGTCTTAGTCTCGACTGGTCTCTGTCCCAACTCAACACTTGTTTCACTTTTGAGTCTTAACTTAAAAGGAcgattcactcaaaaatgaatattctttcCCTTTACTCAAGTCAAAGGCTGGCTTATTTTCCCCAAGAATTGAGTAGATCTTTCTTTGTGCACAACAGAAGAAtggaactcaaacaggtttggaacacgTGGAGTATGACTAAATAAGTAATGACAACAAAATTGATGCAATAAGTTTTGATGAGTTTTTGATAATAAACATCTGAATTTGAACAGATGAACACAACAGATTTCACAGCTACAATGAAAGATTTTTAGGGTCTTGACTTAAATTCCTCACAAAGAACTTCATAACGTTTGGAAATGGCACATTGGGCCACTTCACAGGATCATAAGTTTGGAATGACTAAAgtaaagaattttcattttttaacgaaCTGTTTCACTTTAGTTTGTGAAGAAAACACGTTTTGACTGACTGCCTGTAAAATGTCTCTTAGAGATATTAGACATCTACCACaatccatacacacatacacacacaaacacATTTAAACAATGGTCAATGAATGACTGTTTCAAACAATGATCCCCAACAAACAATTCATGCACATAACATTTCAGTGGCTAACACTGCggtaatattaacaataatgcaAGAACTACAGATTCCAAGCACCATGGTCTTCGTGATATATATTGGAAGATTCCGCTATATAGTCATAATACCGTAGATTATAGTTCCCTCAGTGTGCTAAAAACTAGTGAAAACCGTTACTTTTGTACAGAATTAGGGAACATGGGAAATTGTTTTCCTGGCTTGGACcaagttctgattggctgacatcAAGAGTTACCTGAGGTGGAGTTGTGACTCAACAAACATTAGGTCTTTGGGATTTAACCTTGATATGCTTCTTACGGAGCTACTCTTTGGTTTTCCCGactgtgtgctttgggtcattgtccttcTGACTGAGGGAAGGAGGTTTTTGCCCAATATCTCACAATACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006003 True 5755 lncRNA 0.36 2 9646362 9661692

Neighbor

gene id symbol gene type direction distance location
XLOC_002618 BX248511.1 coding downstream 108027 9534615 ~ 9538335 (-)
XLOC_002617 morn5 coding downstream 236294 9397305 ~ 9410068 (-)
XLOC_002616 mrrf coding downstream 300002 9305050 ~ 9346360 (-)
XLOC_002614 anxa3b coding downstream 376629 9247593 ~ 9269733 (-)
XLOC_002615 NA coding downstream 378651 9266053 ~ 9267711 (-)
XLOC_002620 strbp coding upstream 173204 9834896 ~ 10018794 (-)
XLOC_002621 NA coding upstream 599653 10261345 ~ 10288683 (-)
XLOC_002622 NA coding upstream 612037 10273729 ~ 10278533 (-)
XLOC_002623 BX323065.1 coding upstream 657616 10319308 ~ 10332427 (-)
XLOC_002624 dbh coding upstream 902569 10564261 ~ 10607118 (-)
XLOC_002612 NA non-coding downstream 499720 9145508 ~ 9146642 (-)
XLOC_002611 BX323017.1 non-coding downstream 504683 9141565 ~ 9141679 (-)
XLOC_002609 CU694950.1 non-coding downstream 629525 9016721 ~ 9016837 (-)
XLOC_002625 NA non-coding upstream 1050486 10712178 ~ 10714227 (-)
XLOC_002626 NA non-coding upstream 1122642 10784334 ~ 10787649 (-)

Expression


Co-expression Network