XLOC_026190 (si:dkey-61n16.5)


Basic Information

Item Value
gene id XLOC_026190
gene name si:dkey-61n16.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 13911950 ~ 13921173 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051106
CAGCACACGAAGAAAGAAGGCAACTTTAAGCGTAAATGAGCgttaaaatagaataaattcaACCTCGACCGACAATGAAGATCTGCATAAAGCGAAGAGATTTTAATCAGAGATCAACGCAACATTCGTTGACGACGATTTTGTGatagcaaaacaaaaacataatcgCTATTCCGACGGATTACTTGTCGAAAAAGAAGGCTGGCGATGAATACTATCAACCTAACAAGTGTGAACTTAACGGAAAGAACTGGACATGCTTTTCAGTACTCCTTTTCAAGCGAGGACCCGATGTTTAAAGACTACAGACCGGTCAGCCGAGACCTCATTCCCTTACCGAAGGGGGTTTTGTACCTGTTAATGGCGGCGTTGGTCATTGTTGCAGTCGCCTATGCCATAGTGGGACATCTAATCAAAGACCTCGCAAATGATGTAGTAGACTGTGTGCTTGGCCCTAATGAAGATGTCGAAAAAGACGACATTTCAAGCATCAGACCCACCCGTCTGCCTGCGTCCCTGTCTTTCTCCCATGCCAACGCCTTCCACGTTTGGGACCAGGACGACGTTGTGATCCCCTTACCATCAGACGACAGCCCCCAGATGAGCCCCCTGCTGCTGGCCGCCATCCCCTACATTCCCTCCTTCTTCCCCACACCCACCTCCGTCAACAGCTCATCAGTGCCCAACAGTCCCGGGCCCATGTCTGCTATCCCACGGGATGTCTAGGAGAGAGTGGATGGTAAAATGGAGGAATATGGCTGCTTTATaaggacatacagttgaagtcaaaattattcgccccggTGTGATTGtctttttttagatatttcccaagttatattttacagagcaaggagtttttacagtatttcctataacatttttgtcttctggagaaagttatttgctttatttcggctagaataaaagcagtttttattttttttaaaaaacattttaaggtcaatattattagccctctaagcagtatttgtttttgatcgtctacagaacaaaccatcatcatacaaagactcgcctaattaacctagttaagcctttaaatgtcacattaagctgtacagtagtatcttgaaaaaaaatctagtcaaatattatgtactgtcataatagtaaagattaaataaatcaattagatatgagttgttaaaactatcttgtttagaagtgttttaaaatagtcttctctctgttaaacagaaattggggaaaaatatacagaagGGCTGATGATTTAGGACTAAtatctctgacttcaactgtatgtgatggACCAAGACCAAAGAAAACCGAATCATTTGTGGACATTTATGGACTAACTGATGCATTCAATaacatttacattcatacactcattgtagatgcttttttaataatataatgtgtgtTTCAGTGCATTCAAAGCTACAAGTTTGGAATCAGtaagatttttaatgttttaaaaaagaaggaaattctgctcaccaaggcctAATTTTGATCTTTgatcaaaaataaagtgaaattgtGAACTATTATTACAATgttaaataactgttttcttaatGAATGTAGTTTAAATGTagtgattcaaagctgaattttactCCTGTCTTCACtgaaaaaattactttttgtttGAGGGGGGACCAACTCTATTTTTCATGCTCGATCCACTCAAATTTGCTAAAACAATTAAAGTTAACtaaatttgtgttaggacaacttGACATGATGTCCTCTCTGCAGTCTGTAACAACGATGATATCCCATACCAAGTCCACTACATAGTGGACATTGTACCGCCCGCTAAGGtaacgcccatgctactgtgatggttgagttcagggtagggggaggtgtaggtaATCGTCTATTGGACCTGGTCCAGTACATAATCAATCTGCAGGCTGCAGTGTGGACTGTCTCCAACTTATAGAAAtttgctgcgtccgaaaccacctactactcagtagctactgcatttgaatttaaacataccaCTCAGTCGttggaaaagtacattctatacgaTATGAATacgaaaagtatgaatggaattcagacgtactacatccgccattttgtcatggtcaagtgacctacctgcgtcagttgtgtTGCTTTACTCCCATCAaggagcatagaatcaccaagaggcgacactctagtgcaatttggtaAACAGCTACTAGATGGTCCGGCGGCCATCTTttaatgaaaactccaatagaacaacagcctATTATAAGtcagttaaataaactattaaaagtgctgatgattgtgataggaagtgttgtattgtcgtcttttatGTTGTATCttagctttaatgcgcttttaaggaaataaataaaaataaaacagctgcTTCCCAtcacgacagcaataagatccaatggacatcCAATCGCTTACACTCCAAATCGGCAGAATCCGGGGCTGTTTTTGggcactgctgttgcaatggaacgttctattgagtgtcgtctcttggtcattctaagctctttactcccattcatgaattctcttgcggggcatcatgggatagcgcagaatgcatgggatgcacactccagaatctcgtCAGAATCTCGTgtcttctcacatactgattttcgaattctatgaattcggacatactactctgctcgcatactgatttaagcgtactatatagtgtggaagtatgcggtttcggacgcagccattgtgtggaacccagtatctTGACATTCTTgtttgtcacatgatccttcaaataTCTTTATAAAATGATGACTTTCTGATCCATTATGATcggttgttaaaaataaaaaatatatagctttgaTTAATATAAACGTAACTACATTATAACTTCCATAAAATAAGTGAAGGGgtataaactaatttggagaggagcaCATgctatgattgatcacagctagtCCCTCTTCTACATTTATCGataaaccaatcagatgaatccaagcctacaataaatagcTTATTTTGTCTTACTCCCTAATCTTCATTTTTAAAGAGTCCCCTtgtccaccccatctcccccctttcctcctttaccagggggaacTCTTGAGACATACCTGATCTCAGAGCCCCTTTTATGCTAAATGACCAGGAGTGAGCTCTGGGCTCAATTATctttgagctcagggttctctcccgggacagcatgctatATTAGTATCAAGcaatagctaagtgtgaactcttgaaatgtattataaatgtataaatgtaaaaacaaactgacaacaataataatactataccaattataaatatttcttcTTGAGCAGATCATGATGTAGGGcataaaatgttttcaaactagattcctgaagggccgcagctcgttttggtccaaccctaatcaaatcaaggtgttcaagactactagttactattaagcaggtgtgagttggaggtagTTGGAGCTACACTATGCAGAGCtgaggccctccaggaattgagtttgagaccactgctgtagactaatCGTGCTTAAAATCCACCTATAAATCACAAGAatgagtaattttattttaaataaataaaataacagattattaattataataatattgcaaaacaaattcacaatttcactttttatctgtatttttaattttaaaaaatgtagcaTTGGTGCGCAGaataattataaacattaaagAAATCGTACTGATGCCTAACTGTTGACTGGAAGTGTATATTACCAGCCTGTTACCTTATTGGGATTCAAAGCCATAACCTTTGGCATTAGCGATGTCTAAGAAATCCAATTCAAAGGAAGACATTTTGATtgtattttcttaaatatttggaCTCTTAAATGTTTGGATTGAACGAGCCATGTAACTCTTTTCCTGTTGTGTAAGACGATTTGTGGAAGCTGTTGAACATCATTACAACTCATCTCCAAAAGGaggattaattttcaaaaaaaaaaaaaaaaaaaacatgcctctTGAGCTCAGGATGACTCTGCATTATATTATGGTATTAATGACATAACAACTCAAGCCTGTCCATGCCTGCGCAAAATAAACCCAACAACCCTCCTTGATATCGGACGGTCCCAAAGGGATCTCTCTTTACGGGATCCAGGCTCTTGGAAATCAGAGATGAGCAGGACAAAGGATAAAAAGGGAATATTATTTGGACAGAGGACCATTGCAATATGAACTGAGAGCATTACACCAAACGCCCTTGAAGAAGTCGTGGAGATTCAGAAATGTCTGATTGAACGTGAACACTGGATGTAAATGTCAAGCTGACTCTGGATCATTTCATGTACTTTTTTTAATGGATGCACCAGAATCTTAAAGTATTAGTTTGGCTCGGTTTGCGTTCTGCACTGGGTCACTCAAACAGGACATGTTCTTGCCCTGTTTCTGCgcttttgtaaaaagaaaatgttggTTCATCTAAACTTTGTTCAACCTTTTCAtctcatttctgtttgtttttgcatCCTCAGTCATGAGCATCTTGTTTTATAACTGTGGTGTTAAATTAATAGGaactaataaaaaaagttaaaatcaa
>TCONS_00051107
CAGCACACGAAGAAAGAAGGCAACTTTAAGCGTAAATGAGCgttaaaatagaataaattcaACCTCGACCGACAATGAAGATCTGCATAAAGCGAAGAGATTTTAATCAGAGATCAACGCAACATTCGTTGACGACGATTTTGTGatagcaaaacaaaaacataatcgCTATTCCGACGGATTACTTGTCGAAAAAGAAGGCTGGCGATGAATACTATCAACCTAACAAGTGTGAACTTAACGGAAAGAACTGGACATGCTTTTCAGTACTCCTTTTCAAGCGAGGACCCGATGTTTAAAGACTACAGACCGGTCAGCCGAGACCTCATTCCCTTACCGAAGGGGGTTTTGTACCTGTTAATGGCGGCGTTGGTCATTGTTGCAGTCGCCTATGCCATAGTGGGACATCTAATCAAAGACCTCGCAAATGATGTAGTAGGTAAGAGATATATAGCCTCAGAAACTTTAGTGTATCTTGAAAAACCTGTAAAAAGTGGTGGACTTTGGCTTATTGGAAGTCTGAAACATAAATTAGTCCAATAAATCAAGCATATTTTCTGTTAGCTTGCTGTACGTTTCTTACAGTGTAAACATGAGGTTCTTAGATCTTTAGAATGTTCGTCACTGTCATTAAAACAGTTCTATTTGGAATTGTTTGCTG

Function

symbol description
si:dkey-61n16.5 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000099695

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051106 False 4563 mRNA 0.38 3 13911950 13921173
TCONS_00051107 True 661 mRNA 0.39 2 13920217 13921173

Neighbor

gene id symbol gene type direction distance location
XLOC_026189 tufm coding downstream 312468 13582019 ~ 13599482 (-)
XLOC_026188 amdhd2 coding downstream 365340 13523773 ~ 13546610 (-)
XLOC_026187 slc25a19 coding downstream 402667 13487760 ~ 13509283 (-)
XLOC_026186 fbxw9 coding downstream 450589 13445772 ~ 13461361 (-)
XLOC_026185 dhps coding downstream 474133 13423935 ~ 13437817 (-)
XLOC_026191 gcdhb coding upstream 16253 13937426 ~ 13955878 (-)
XLOC_026192 nfil3-6 coding upstream 178520 14099693 ~ 14103551 (-)
XLOC_026193 NA coding upstream 238364 14159537 ~ 14198357 (-)
XLOC_026194 NA coding upstream 239353 14160526 ~ 14199783 (-)
XLOC_026195 NA coding upstream 249127 14170300 ~ 14184139 (-)
XLOC_026184 NA non-coding downstream 501893 13408110 ~ 13410057 (-)
XLOC_026183 NA non-coding downstream 550867 13348218 ~ 13361083 (-)
XLOC_026182 NA non-coding downstream 780626 13131077 ~ 13131324 (-)
XLOC_026177 NA non-coding downstream 1062339 12829196 ~ 12849611 (-)
XLOC_026175 NA non-coding downstream 1553434 12355532 ~ 12358516 (-)
XLOC_026196 NA non-coding upstream 254789 14175962 ~ 14178936 (-)
XLOC_026197 NA non-coding upstream 305884 14227057 ~ 14270955 (-)

Expression


Co-expression Network