XLOC_026192 (nfil3-6)


Basic Information

Item Value
gene id XLOC_026192
gene name nfil3-6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 14099693 ~ 14103551 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051110
GAGCGTCCTCGACTGAACCTGATGGAGCAAAGACACAAATAGGGGCCGCGCGGTTGCAGGAGGAACAGACACGATAGGATTGAACGGCGATAGGAGGCTGTGGGACTTGAACTAAACGAAAACACAACACTGTTTGTGGTTGTTTATATATCATTGCTTTTTTCTGAGGAAAACCTTCGAGTGTTCAACCGGAGAACTGAAGACGTTCTGGACAGAATTACGCGGCGGTTTATAATGGTGGAGCCACTGCTGCGTCAATAACATCTGAAGCTGACCTGAAAAGCACTCACACAGCACACTGAACATTGAACAAGAAAGTCTCAAGATGTTTGAAGAGTCATCTCAGGAGATGAGGGCGTTAAATGCAGGCACTCCCAGCAGCACGATGTCTTTTACAGATGAAGCAGTGTCTATATTGACATCAAGCAGTTTGCTTGCACGCTCACTTCTAGGCCGAACATCAGCACTTAAACGCAAAGATGTCAGTCCATCAAGCATTTCCTCAGCAAGACGCAAGCGAGAGTTCATTCCCCATGAAAAGAAAGACGACGGCTACTGGGACAAGCGCAAGAAAAACAATGAAGCCGCAAAGCGCTCTCGTGAAAAACGCCGTGTAAATGACATGGTGTTAGAAAACCGTGTCCTAACGTTACTCGAGGAGAACGCTAGACTGCGAGCAGAACTTCTAGCACTGAAATTCCGCTTCGGTCTCATTAAAGACCCCTCAAATGCTTCGATACTTCCGCTTACGACAGGAAGCTGCGTCCCACAACCTTCAGCGCAGCATTACTACCTTCCACGTGGTGACAGCGCTCACCATACTGGCCCAATGCCATCAAATCAATCCCCCACACAAAGTGCACCACCATCCAGCCGAAGCATCAGAGATACCAGCAGCATGTCTGAAGATTCGGGTTTCTCCACGCCCGGTGGCTCCAGTGTGGGCAGTCCTGTATTCTTCGAGGACAGATTAAGCGATCATGGAAAACTGTCCCCACATCGAGCAGATGAGCTCTGCTATGAGTCGCACCACTCCCCATCTGATCTTTTAGCAGTGGGAAATCACAACATGCCATCCACCAGGCTGGAGTCGATGGATGGCATGAAGAGTTTACCGCACAAGCTACGGTTCAAATCTCCGGGTGGTGGCGATTGTGAAAATCTTGGAGAACGGCAAAGTGCTGCAATCCCAATGGCCAATGCTAGAGTTCACAGCTATACGCATGAGGGAGCGGGTTACTGGACACCGCATGATGGGGAAGACGCTCGGAAAGTGATCCAGCAGCAACATGTGAATTACAGCCACAACGTGAACGCAAACGAATCGCAATATCAGGCAGAAAACAGCATGCTGAAATCTCAGCTCAGCTCTCTCAGCGAGGAAGTGGCCCAGCTCAAAAAGCTCTTCTCCGAGCAGCTGCTCACCAAAACGAATTAAGACATTGTAAAGCACTGTTAAAAATATCTCTAAATTAGCACAGTTTTTGTTTtacgtttatttacggttgtgaattgcattgtaggatgttgatctctgctttgtcgaaaatttaactctacagtttaacaaagtgacttttagtgacattttagtagtttgtaaTAATATAACGGATAAGaaattaaggctgcacaatatatggtttcagcatcgtTATCGCAATGTGAAATCCGCAATAATCACACCGCAGAATCTGCAATGTCAGTTTAAGTTAAATTATACCTTTTATTCATCCATGAGGAAATATGAGTGAGATTATAGTTGACCACAATtaattataacctttattttatccggaaagacacattgagattaaaaaatctcttttacaagagcatccttgccaagattaggcagtatacaCATCACATGggtctaacaaacaaaaaaacaattgacaGTAAACATGAATCACACCAACAAACAGACTATTTAACTACAAGCCTGTGCATCACTTTCTAAATCATTTATACTCTTTTTAAAGGCATTTAGTGAAATCAATtctttaaactgcaactttgTTTGTAGATTATTCCATGCAGAAGGTGTTGTGTATTAAAAAACCTTTCTTCCCATCTCAGTCCGCACTttaggaacagacagtaaataTCCTTTAACCGAAGGCCATAGCTGAGGACAggtttttttacaaatgtaattctggAGATCTGATGGAAGTAAACCCAATATAGCTTTGTAAACAAAGCTATGCCAATGCTTGAGCCTACgaatggacaaagcagaccaaGCTACCCTAGTATACAACACACAATGATGAGTAAGGGGTTGAAAATTAGTTATAAATCTCCATGCACCAATCTATAGCGCATGGACTTTGTGAAGTATAATCCTAAAAGTGTGAATGTTTttcatttgctttgtttttaaggCCTTTGACTGTAAGATTTCAAGTGTATTTAAACCATTTGTGTAGAAGAAAtcataaaattgtaattaaagatgttttcatttttaat

Function

symbol description
nfil3-6 Predicted to enable DNA-binding transcription factor activity. Acts upstream of or within circadian regulation of gene expression and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in epiphysis; retina; retinal inner nuclear layer; and retinal photoreceptor layer.

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0032922 circadian regulation of gene expression biological_process
GO:0007623 circadian rhythm biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040704-63 Predicted to enable DNA-binding transcription factor activity. Acts upstream of or within circadian regulation of gene expression and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in epiphysis; retina; retinal inner nuclear layer; and retinal photoreceptor layer.

Ensembl:

ensembl_id ENSDARG00000087188

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051110 True 2478 mRNA 0.42 2 14099693 14103551

Neighbor

gene id symbol gene type direction distance location
XLOC_026191 gcdhb coding downstream 143815 13937426 ~ 13955878 (-)
XLOC_026190 si:dkey-61n16.5 coding downstream 178520 13911950 ~ 13921173 (-)
XLOC_026189 tufm coding downstream 500211 13582019 ~ 13599482 (-)
XLOC_026188 amdhd2 coding downstream 553083 13523773 ~ 13546610 (-)
XLOC_026187 slc25a19 coding downstream 590410 13487760 ~ 13509283 (-)
XLOC_026193 NA coding upstream 55986 14159537 ~ 14198357 (-)
XLOC_026194 NA coding upstream 56975 14160526 ~ 14199783 (-)
XLOC_026195 NA coding upstream 66749 14170300 ~ 14184139 (-)
XLOC_026196 NA coding upstream 72411 14175962 ~ 14178936 (-)
XLOC_026197 NA coding upstream 123506 14227057 ~ 14270955 (-)
XLOC_026184 NA non-coding downstream 689636 13408110 ~ 13410057 (-)
XLOC_026183 NA non-coding downstream 738610 13348218 ~ 13361083 (-)
XLOC_026182 NA non-coding downstream 968369 13131077 ~ 13131324 (-)
XLOC_026177 NA non-coding downstream 1250082 12829196 ~ 12849611 (-)
XLOC_026175 NA non-coding downstream 1741177 12355532 ~ 12358516 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000113_02491883_02493061 NFIL3-6 coding CI01000113 null 2490653 ~ 2493575 (-)
bowfin (Amia calva) AMCG00008531 NA coding CM030126.1 CM030126.1 3521469 ~ 3528475 (-)