G706683 (stxbp5)


Basic Information

Item Value
gene id G706683
gene name stxbp5
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 39219644 ~ 39226313 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU803684
GCAAGACAATGACAGGCTGCAGTAGCCTCTGTTCCCCAGCAGGAGGCAGGTTGAGGGCCACAGCCAGGACTGTGCCCAGGGAAGTGCCCACGTACAGGCAGGGTGTGATGGTGCTGTCCCCCTTCCGAGCGAATGTCTCACAGAAGTGGAAGGAGGTGATGGCCTCGCGTGCCTCCTTGTCAATGGAGGTGACGGAGGAGGAGCGTGAACGGCTGAAGGAGTTGTCCCGGTGGTCTAGTGGGTTGGCGCCCCGCGGAGGACATACAGAcaggaggacCAAGTCTGGCTTTAGCTCAGTAGGCAAGCTTAATTTCCGTGACATCTTTGCTGGAAAAAAGAGAACATCCCTCTTTACA

Function

symbol description
stxbp5 Predicted to enable GTPase activator activity; myosin II binding activity; and syntaxin-1 binding activity. Predicted to be involved in positive regulation of exocytosis and regulation of protein secretion. Predicted to act upstream of or within exocytosis. Located in cytosol.

NR:

description
PREDICTED: syntaxin-binding protein 5 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU803684 True 356 TUCP 0.57 2 39219644 39226313
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110531091 NA coding downstream 166245 39050749 ~ 39053399 (-)
LOC118965515 NA coding downstream 395599 38822129 ~ 38826089 (-)
LOC110530913 NA coding downstream 417692 38787513 ~ 38801952 (-)
trnal-uaa-3 NA coding downstream 779364 38440198 ~ 38440280 (-)
LOC110529893 LOC106571757 coding downstream 832336 38330693 ~ 38387308 (-)
slc22a16 LOC106571810 coding upstream 733056 39956961 ~ 40017167 (-)
LOC110530919 cdc40 coding upstream 905878 40132191 ~ 40164976 (-)
LOC118965516 LOC106588149 coding upstream 917598 40143911 ~ 40145193 (-)
armc2 armc2 coding upstream 1411958 40638271 ~ 40669501 (-)
LOC110529912 LOC106571799 coding upstream 1498084 40724397 ~ 40779631 (-)
G705292 NA non-coding downstream 452255 38764581 ~ 38767389 (-)
G705271 NA non-coding downstream 465504 38753922 ~ 38754140 (-)
G705266 NA non-coding downstream 470250 38749014 ~ 38749394 (-)
G705261 NA non-coding downstream 473566 38745876 ~ 38746078 (-)
G706700 NA non-coding upstream 14550 39240863 ~ 39241112 (-)
G706703 NA non-coding upstream 18753 39245066 ~ 39245432 (-)
G706797 NA non-coding upstream 162969 39389282 ~ 39389528 (-)
G706800 NA non-coding upstream 170497 39396810 ~ 39397157 (-)
G706816 NA non-coding upstream 201836 39428149 ~ 39428369 (-)
G704874 NA other downstream 905841 38313489 ~ 38313803 (-)
G704702 NA other downstream 1181298 38037725 ~ 38038346 (-)
LOC110530908 otof other downstream 1727487 37474229 ~ 37626960 (-)
LOC110529880 LOC106571768 other downstream 1858051 37355096 ~ 37361922 (-)
G701618 LOC106571560 other downstream 3301469 35900623 ~ 35918175 (-)
G709272 NA other upstream 3493458 42719771 ~ 42720699 (-)
G709454 NA other upstream 3944447 43170760 ~ 43171082 (-)
G711133 NA other upstream 5312480 44538793 ~ 44539504 (-)
G712814 NA other upstream 6231464 45457777 ~ 45458248 (-)

Expression

G706683(stxbp5) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
End of interactive chart.

G706683(stxbp5) Expression in each Bioproject

Bar chart with 6 bars.
G706683(stxbp5) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G173438 NA non-coding NC_047604.1 CM018550.1 29244000 ~ 29244985 (-)
tiger barb (Puntius tetrazona) G139069 stxbp5a,LOC107601184,LOC107710208,LOC107602546,LOC107726399,LOC107696120 non-coding NC_056718.1 CM032087.1 16698307 ~ 16700980 (+)