G707485


Basic Information

Item Value
gene id G707485
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 40512114 ~ 40516751 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU804512
CTTCAAGCTAATGGCAAAACTAATAAAAGAAATCAAGGCAAATCAAGTTCCAGGCAAAATGGATGTAAAACAAGCATAAAACAGTAGCAGGCATCATGGCTAAATATTACAGCAACTGTACGTGTACATATTCATCTGCATCTTTGTGCACATGAGAGCAACGCAGAATAATCATTCCATAAGACCTAGAACCTCTTATTTAACTGGACTAAAATCAAGGTGACATATGGACATTGTTAGAAAGCAACAAACAAAAACTCAATTTTAAAAGCTCTATAAACATAAGCTTCAGAGCTTCACACAGAAAATGGTGGCTGCCCCCAGAGCCATAGACATGTAAACATCAGCAAACTGGGTTTGAGATGTACAATAGTAATGGGTGCCATTGTTCCAAAGACAGCTACATTCTCAGGTCAAGAATGTAAATTTAATTCTATGTTGGAATGTAGCCAAGTCATGGAACACAATTTGACATTTTGCATGCCTGTGAATCTGGCCAGCTGACCCATTCTTCTGTCTGGTTTAAGCTCCCAACGTCGAGTGTGACtgagaaaacaaatacatttaaagctGCTCTCACCACTCAAAGCATCTTTGATTGAATCTTTACAAGGGGTCTGGAAGTGCGGAGTCCCTTTAATATCTACTGGGTGTACTATCAAGTTAAGACAAAAATACAAATCTTCATTTATGTTCAACTGAGTAAGGCACTTTTCTTGAAAAGGTGCATGGAGAGGGGCCGGGCCGTGTGACTTAGTTTGCCcgaactgaagaaaaaaaaattgtatcagAATATTTGTATCAGTTGCTATGGCAATGTCCTGTGACAAACACTGAAAGAAAATACTCACTGCTACATTGTGTGTTCCTACGGCATGCAGACTGATTTAAATCACGGTGTCCTTAAGACCATGGCAAAAGGAGAAATAATGGTGAAGTAACACTCAGAATGCTCTATGGATTCACAAATGCTTATCAGTTGCCTTCTCCACCTGACATTTGGCCATTAACGTTCAGCATACTGTGAATGCAGACAAAGCAAAACTAGATTTGTACATCTGACTTGCCatagtttgggggggggggggggtcgtcttTGGGATGTAGCCTAATGCCATTGGGTGACTGCAGATTCATCTTTAAAAGGCAAACCTAAGGTGATTAAGAACATACATTAAATCAGGGCCAATGAACGACAGACGTGCACTTTTAAATTACACTGAGTGTTCCATACAAAGCAAGGTGATATTTTTTCATAATTATGAAAATATTGAGCTAAGAGTTCTCTCACAAGCATTCATACATTTTTGGCAGCAACAGGAAGGCAAAAAGTACAAAACAAAACCGTCAGTGCCGCACTCCATTTTCCATGCCAAGACTGAGAACTTCGACATTAACACACATTGTTCAGGCACTCTTCTCTACCAAATTGTTTGACAAATTAATCAAGTGGTTCTTTCTCTTTTAAGTGTCTGAAGCCCCAATAGCATAATTCAACAGAAAATATTACATTTCCATTTGTTTGACATGCATTAATGCAGAAAAAGCCATTGCAAGTGAATGCTACtgaaaaaactaaaaaaaaagaaaacgcaATCTTGCCTTTACAGGATTGAAAGTTCAAACCTTTAAGGTAAATCAACTGAATGACATGATAGCTCTATGTACAAAGGGGACAAAGTCACACTATTAGCAGCAAGCTAATCAAAGAACTAGACACATACTGTTTGCACTCTAAACTTGGGAAACTTACTGCTTTTCTGTAGTTCAacacccatctcctctccttggcactacatacatttttttttttttttttttttaaaaggtgcCTCAATAGGAGAAAAGAAAACTCCCAAAATGCAAAGGACAATGTCTCAACATTAAAAGTCACTTAAGTTCTGGGACCAGTTATTATTAAGTCAGTTATTTGACACTTTCAAAACTCTATCTCTATACAATTTATGCAATGACTACAGAAAACATTAAATGTACTAACTAAGCTTAAAATACAGGTAATTGActggggaggacagctcataataataatggctggaacggcatCAAACCATGTTTGAGTTGTGATACTATATACCGATTCCGCTCCAACCACTACGAGCCCACCCTCCtcaattaaggtgtcaccaacctcctgtgagagACACAGTTTAAACCTCCTATGCTCCATTGAAACCCCTCTATCAAAGTCACAGAGTTCTCTTCTTCCTAGcaatggtagccaaaataatgggcaactgggcatttttaatACATGACCCTAATCATGATGAGCTGTTAATTGCTTTTTTTAACcaaggaaccacacctgtgtggaagcacatgctttcaatatactgtatccctCATTCATGCAAGTGTTTCATTTATTTTGGCCTATAAATGCCTTTCCacctttattattttcaaaaacaTATGTCATTAGAATGTGTGTACAATATGAGGGGGAACTAGCATTAGGGAGCTGTGTGGAACTTAGGCCCTACATTTAATGAAACAAAATATATTCAGTGTGCATAGGGGTCACTTTTCAACCAATGCCATTCTAAATCAATTTAAACCTAATAGgtcttcatccatccatccaaaacCACGATGAGcaactactgtatctatctactcttcAATAATAAAAGGCTCTTCAGTACAGCTGGGATACTAGGGTTctcagggttgggctcaattccatttcaattcagtcaattcataaAGTCAACTGAAATGTAAATCACTCCCAATCATTTTCTATGAGGAAAAtgtggaatttcagtttactacCTGGGTTGGCTGAATTAAAATGGAACGGAGGCCAACTGTGGTTCTGTTCTCGCGATACTGCTCCTGTCCTGTGTCCAGACTGCTTTTACTTCATGACAATCAAGCCTCagccaggaggaagaggagcatcATCATAAATCTCCCTCATTCCCCCCACTTTAAGTAACAGACATAACATTAAAGGCACTTTGCTTCCAATACTGTCAGCATCAAGGTGCATGCTGTCTTATCTTCTTCCAACTCCATTCAACACAATAATTTATACTTCTGATTGATTTATCACTCCCATATATTTACCACAATATTTTATCTGTAGACCCCTTCAACCGTGTCCTAAAGACTTGGCTCATTGTGATTTCCTTCCTGTTAAAGGAAGGTGGTGGGTCAAGGGGTCATCTCCAGggTCGACTTGGGTTTATTGCATTGAGCTGCTCTTTTGGCAGTGTGTAGTGTTTGCCAAACGCACACACAGCACTGAGTCTTAACACCAAGAGAGCCCAACTCGTCCTCCACTTAAGACGGGGGCATCTACTTAATATTCTATCTTAAGCAGGGCTCTACACTGACTTTTTTGTGTGCACCTAAGTTGAAAATTGTAGGCACAAAAAGAAATTTAGTAGCACAATGCTAAATATTTGAGGTAATAAAGCTAGAATCATAATTTTTCCTACGTGCATTGGTGCtcctaaatacatttttaaaaatccagttcacacagcaaaatatttacACGCATATGTGAGTAAAGTGGTCACACTGTAGGGCCCTGCTTAGAGGATGGACCATTGCTTATAGTTCTCCTTTTATTCTTACTTTAACAGGCATCTCTGCCATCAATACAGAGAATACAAACTCTTCATAAAGGAGTTGTGAAAACACCTACCCAGATCTGTCCCATGACAAACAAGAAAAAAAGCTATGCTATATCATCCAATCATCTAGTTCCAAaaaagaaagggggaggggaCCTCAATCAAACAGCGTTTCCAAAGCGTTACCAAGGTGCATGAACAAGCTAGTACTCCAACGCTGTGGCAGCCCCACTATACACCAGCAGAATTGAAAGTTTACATAAATTACTATTGGGTCTATTAATGACAGGCCAGGCAGGTAAAACATTAAGATGAAGGGCCAGGGGAGTGAAGCAGTAAACAAGTCTGCTTTTCATCCAGTCAGCACACAGGAGAATAGCCACAATGACTCACTGCAGGAGGGGGGGTGGGTGTAGGAGAGGGGGAACGAGAGACGGGGAATCCATAGTGATGTAATCCTCTGTTGAAGGCTCAAATGCCACTGCGCTGGAGTTCACTTCAGCTGCACCAGGGTGTGAGAAATGTGCAGAAAACTACGTACAGTAAAAGATGTGGCGCACTTGTGGGTGTGTACAGTTTATAACCTTGTGTGTATTTAAGCTACAGGCCTAAACCACAGGTTGGCACCGCAATGGCATTAGGCTTTTGGGAGAAACACTGATCGGAAACACTGTGATAATCACAATGGCCAGGGGTTCGGGTTTGGGTGTTCATAGTGGGCCCCAGAGTAGGTATTGTGGTTGGTGGAGGTGGAGTGGGTTCTTCAGAGGGTGTGGTAGTTGCGGTCCTTGGACTTGCAGAACTTGTAGAGGAAGAAGACCACGGCCTGCAGGCCCAAGACCAGCACTATGCCCCCAATGAAGCTTGCTGCGTCAAATGTGGAATTCTTATGAGGCGCTGGAGAGGGCCCCACAGGTGATGTGGTGGTGACACTGAC

Function

NR:

description
sialomucin core protein 24-like isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU804512 True 4545 lncRNA 0.41 3 40512114 40516751

Neighbor

gene id symbol gene type direction distance location
LOC110530919 cdc40 coding downstream 347138 40132191 ~ 40164976 (-)
LOC118965516 LOC106588149 coding downstream 366921 40143911 ~ 40145193 (-)
slc22a16 LOC106571810 coding downstream 494947 39956961 ~ 40017167 (-)
LOC110531091 NA coding downstream 1458715 39050749 ~ 39053399 (-)
LOC118965515 NA coding downstream 1688069 38822129 ~ 38826089 (-)
armc2 armc2 coding upstream 121520 40638271 ~ 40669501 (-)
LOC110529912 LOC106571799 coding upstream 207646 40724397 ~ 40779631 (-)
LOC118965517 NA coding upstream 263100 40779851 ~ 40800037 (-)
LOC110529916 LOC106571797 coding upstream 441391 40958142 ~ 40969478 (-)
LOC118965611 NA coding upstream 1208770 41725469 ~ 41728987 (-)
G707505 NA non-coding downstream 12624 40498050 ~ 40499490 (-)
G707497 LOC106613263 non-coding downstream 26734 40485050 ~ 40485380 (-)
G707488 NA non-coding downstream 43055 40468826 ~ 40469059 (-)
G707422 NA non-coding downstream 64939 40446795 ~ 40447175 (-)
G707413 NA non-coding downstream 77820 40434044 ~ 40434294 (-)
G707520 NA non-coding upstream 5533 40522284 ~ 40522521 (-)
G707801 NA non-coding upstream 118703 40635454 ~ 40636067 (-)
G707843 NA non-coding upstream 180637 40697388 ~ 40697588 (-)
G707847 NA non-coding upstream 187459 40704210 ~ 40704727 (-)
G707849 NA non-coding upstream 191291 40708042 ~ 40708401 (-)
G706683 stxbp5 other downstream 1285801 39219644 ~ 39226313 (-)
G704874 NA other downstream 2198311 38313489 ~ 38313803 (-)
G704702 NA other downstream 2473768 38037725 ~ 38038346 (-)
LOC110530908 otof other downstream 3019957 37474229 ~ 37626960 (-)
G709272 NA other upstream 2203020 42719771 ~ 42720699 (-)
G709454 NA other upstream 2654009 43170760 ~ 43171082 (-)
G711133 NA other upstream 4022042 44538793 ~ 44539504 (-)
G712814 NA other upstream 4941026 45457777 ~ 45458248 (-)
crfb16 LOC106568648 other upstream 5794379 46309732 ~ 46325685 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017428 cd164 coding NC_007131.7 CM002904.2 32118559 ~ 32139062 (+)