G707817


Basic Information

Item Value
gene id G707817
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 40716415 ~ 40717888 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU804865
cacagtactgtctttccaagctagtcggaagacttccagtttggtgtggcgccatttccgttccaattttctggaagcttgcttcagagctcgggtcttttctgtgtaccagggagctagtttcttatgagaaatgtttttagtttttaggggtgcaactgcatctagggtattgcgcaaggttaaattgagttcctcagttaggtggttaactgattcttgtcctctggcgtccttgggtagacagagggaatctggaaggacatcaaggaatccttgtgttgtctgtgaatttatagcatgacttttgatgatccttggttggggtctgagcagattatttgttgcaattgcaaacgtaataaaatggtggtccgatagtccaggattatgatgaaaaacattaagatccacaacatttattccatgggacaaaactaggtccagcgtatgactgtgacagtgagtgggtccagagacatgttggacaaaacccactgagtcgatgatggctccgaaagccttttggagtgggtctgtggacttttccatgtgaatattaaagtcaccaaagattagaatattatccgctatgactacaaggtccgataggaattcagggaactcagtgaggaacgctgtatattgcccaggaggcctgtaaacagtagctataaaaagtgattgagtaggctgcatagatttcatgactagaagctcaaaagacgaaaaagtcatttttttttttgtaaattgaaatttgctatcgtaaatgttagcaacacctccgcctttgcgggatgcacgggggatatggtcgctagtgtagccaggaggtgaggcctcatttagcacagtaaattcatcaggcttaagccatgtttcagtcaggccaatcacatcaagattatgatcagtgattagttcattgactataattgcctttgaagtaagggatctaacattaagtagccctattttgagatgtgaggtatcatgatctctttcaataatgacaggaatggaggtggtctttatcctagtgagattagaaggcatcatgttaatgttactacttagcttcggctgttggaggtcctgacgaatcgtgtccagataaagcgtccggcgtgaaaaagttgaggaggaaaaaacaaaaatataaatggtaattaaaaagtaaaaaccgtaaatttgtcaggtagcaaaacaggttggcaacaaaacgcacagcaaatcaaaaacaagtctgcaagttgtgatcTCTGCTCTTTGACCCCTGGAGTACACTCGCTTATTCTCGACGATGTTGATGTTAGTGGGTATTTTTCCTGTGTATTCCATTTTGAATTGTAATCTAGTTTGTATAACAAATGGTGCGCATGTAAATAAACCTTGGTGAAGCTCCACACTCTACTGTTTCCAGAAGTGCTCATTTTCTTTATGACATGTTTTGGGTTTACTGAAAATGCAC
>TU804864
cacagtactgtctttccaagctagtcggaagacttccagtttggtgtggcgccatttccgttccaattttctggaagcttgcttcagagctcgggtcttttctgtgtaccagggagctagtttcttatgagaaatgtttttagtttttaggggtgcaactgcatctagggtattgcgcaaggttaaattgagttcctcagttaggtggttaactgattcttgtcctctggcgtccttgggtagacagagggaatctggaaggacatcaaggaatccttgtgttgtctgtgaatttatagcatgacttttgatgatccttggttggggtctgagcagattatttgttgcaattgcaaacgtaataaaatggtggtccgatagtccaggattatgatgaaaaacattaagatccacaacatttattccatgggacaaaactaggtccagcgtatgactgtgacagtgagtgggtccagagacatgttggacaaaacccactgagtcgatgatggctccgaaagccttttggagtgggtctgtggacttttccatgtgaatattaaagtcaccaaagattagaatattatccgctatgactacaaggtccgataggaattcagggaactcagtgaggaacgctgtatattgcccaggaggcctgtaaacagtagctataaaaagtgattgagtaggctgcatagatttcatgactagaagctcaaaagacgaaaaagtcatttttttttttgtaaattgaaatttgctatcgtaaatgttagcaacacctccgcctttgcgggatgcacgggggatatggtcgctagtgtagccaggaggtgaggcctcatttagcacagtaaattcatcaggcttaagccatgtttcagtcaggccaatcacatcaagattatgatcagtgattagttcattgactataattgcctttgaagtaagggatctaacattaagtagccctattttgagatgtgaggtatcatgatctctttcaataatgacaggaatggaggtggtctttatcctagtgagattagaaggcatcatgttaatgttactacttagcttcggctgttggaggtcctgacgaatcgtgtccagataaagcgtccggcgtgaaaaagttgaggaggaaaaaacaaaaatataaatggtaattaaaaagtaaaaaccgtaaatttgtcaggtagcaaaacaggttggcaacaaaacgcacagcaaatcaaaaacaagtctgcaagttgtgatcTCTGCTCTTTGACCCCTGGAGTACACTCGCTTATTCTCGACGATGTTGATGTTAGTGGGTATTTTTCCTGTGTATTCCATTTTGAATTGTAATCTAGTTTGTATAACAAATGGTGCGCATGTAAATAAACCTTGGTGAAGCTCCACACTCTA

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU804865 False 1474 lncRNA 0.41 1 40716415 40717888
TU804864 True 1416 lncRNA 0.41 1 40716473 40717888

Neighbor

gene id symbol gene type direction distance location
armc2 armc2 coding downstream 46914 40638271 ~ 40669501 (-)
LOC110530919 cdc40 coding downstream 551439 40132191 ~ 40164976 (-)
LOC118965516 LOC106588149 coding downstream 571222 40143911 ~ 40145193 (-)
slc22a16 LOC106571810 coding downstream 699248 39956961 ~ 40017167 (-)
LOC110531091 NA coding downstream 1663016 39050749 ~ 39053399 (-)
LOC110529912 LOC106571799 coding upstream 6509 40724397 ~ 40779631 (-)
LOC118965517 NA coding upstream 61963 40779851 ~ 40800037 (-)
LOC110529916 LOC106571797 coding upstream 240254 40958142 ~ 40969478 (-)
LOC118965611 NA coding upstream 1007633 41725469 ~ 41728987 (-)
klhl18 klhl18 coding upstream 1622794 42340682 ~ 42420087 (-)
G707849 NA non-coding downstream 8014 40708042 ~ 40708401 (-)
G707847 NA non-coding downstream 11688 40704210 ~ 40704727 (-)
G707843 NA non-coding downstream 18827 40697388 ~ 40697588 (-)
G707801 NA non-coding downstream 80348 40635454 ~ 40636067 (-)
G707520 NA non-coding downstream 193894 40522284 ~ 40522521 (-)
G707884 NA non-coding upstream 94900 40812788 ~ 40819330 (-)
G707905 yo84 non-coding upstream 114079 40831967 ~ 40832338 (-)
G707907 NA non-coding upstream 118011 40835899 ~ 40836131 (-)
G707917 NA non-coding upstream 126404 40844292 ~ 40844519 (-)
G708154 NA non-coding upstream 157328 40875216 ~ 40910989 (-)
G706683 stxbp5 other downstream 1490102 39219644 ~ 39226313 (-)
G704874 NA other downstream 2402612 38313489 ~ 38313803 (-)
G704702 NA other downstream 2678069 38037725 ~ 38038346 (-)
LOC110530908 otof other downstream 3224258 37474229 ~ 37626960 (-)
G709272 NA other upstream 2001883 42719771 ~ 42720699 (-)
G709454 NA other upstream 2452872 43170760 ~ 43171082 (-)
G711133 NA other upstream 3820905 44538793 ~ 44539504 (-)
G712814 NA other upstream 4739889 45457777 ~ 45458248 (-)
crfb16 LOC106568648 other upstream 5593242 46309732 ~ 46325685 (-)

Expression


Co-expression Network