XLOC_002621


Basic Information

Item Value
gene id XLOC_002621
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 10261345 ~ 10288683 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006004
CGCCACCTTGCTAGTAGAATAGAGTTTTTACAAAATAACCAACACCACACATCATGCTTCTCAGCAAAGCAGATCCAGCCTCAACTGATGTCCATGAGGAAGAGTCAGCTGCTCCAGCCCTGAGCTCACTCCCATCATCCTCTGCATCTCCTTGTCAGCCTTGGTGATGTGCTTGGCGGCCGTTTTGGGATCCACCTCCGCCAGAAGCTCCTTCACCCTCTTCAACACGCTCATCTCCAGAGGTTTATTTTCAGGTGGCAGAAGAGTCGACTGGTATTTCCCTGGTTTGAAGGATGAACTAGTCTCCACCAGGGGGAGCATGAAGCCCTCCACTCCGTCTGGAGCTCCAGAGCCCAGGCTTTGGCCCTCCTCCACCTTCAACCTCTCTACGTAGCTCTTGCAGGGAGGAATGGGGGCTTGTCCGGGTCTCAGCTCACAGTAGCTGCCGCCTTGCTCTAAACTCTCAGATTGGTACCCATGAGCAGGTGTGGAGTAAGTGCTAGGGCCCGTTTCTGAGCAGGGAATGTTGTTATTGGAGGAGGATGGCGAAAGGTGGGGATCGCTGGAGCGCCTCATCACTGGAGAAGGCGGGATGACGGCAAGCACACGTCCACCTGAACCATGTCTGTGGCGGGAGACTGGAAAAACCATTCAAATAGCAGATTTAATTGGGTAAGTTAAGCCTTAAATGGCAAACATTGCTTTTGTTATATATCTGTATTGtatctgtaaatatttttctttttttttttatctgtaaataTAATACAGTGGTTCCTACACATGTCCCCCAACTGCCCCCCACCTCCAAACAACACTCCAAACAATTCTACTTAACTAAACACTCCTGATTGGACTCACTAGGTCACTGAAAATACTCTCAAACCCGCTGTATCTAAAATCGTCTCCTATATTCTTAAATAGTGCACTGTTTGAGGAAGCAGACATTTGTAGTGGTTTCTGAAACCACTGTGGACATTCTGTAGAGCACTCAAtcaatcccataatgcactgcaatGACAAGTGTACAACTGATGTATATTTAGAGGATATAGGGAGCAGTTTTGGATACAGCCCTACACAGGGGTCTTACACAGTGCAAAATGTGCATTGTTGGGGTTTCTTCAGCTGGTGTGTCAGCCTGGG
>TCONS_00006006
AAGAAGTTTTGTTGTGGCGCCACCTTGCTAGTAGAATAGAGTTTTTACAAAATAACCAACACCACACATCATGCTTCTCAGCAAAGGTTAGTATGTCCTTTGATTATTGTTGCTGATAAAGGTTTGGTTACTGCACGGGTTTCAGTCCAAACGGaatagaagtaaagttggttttatattcgcacattccgaCCTCTGCGTTCAATAAGTTTGTTAATCAGCAAGTAAAGAATCCAAATTCAATTATTTACCGTTGTAGTCGATTATGAGCAAAATGTACGCCACACTTTTCTGTCAAACTCGGCGTTTTAAAGGAGTAGAAAAACACGCTTACCTCTATGAAGGAGGTGACGTCATCGCTTTTTTGAGGGACCGTCTACAAACTATCAGTTTGTAAAATCAAGCTGTCAACGTTCACTGTCTATAGTAAGCCTACTACTTAATCTTAATAAAATCATCTGCAAACAATATATCACAGACATGTTTATGTATACATTATAttcaaacaatttaaaaacataaaactttTAGAATAGACTTAGTAATTTAGAATAGTATATTAGTATAGAATAGTAATTTTATACACTGATTTTTGAGTTATGATTAATGTATATACACTTTACACAAGTATACATGTTCATGTGTAATATGAATAACTATATATGTTTTTTCCCCTCTTCTTTTTCCTAATTATTTACAGATTGTACGCAAGCAAAAGATGGCCAGATCGAGACTTGTGAACTTCACCACTGGCTCCCTCCTTTAAAATGTTACTCTGCTGAAGTACATGtgaataaagaaatattttcaaGACAGCAAATAACAGTGTCATGAAATGAGTGCTGCTCATGTGGACGAAAAGAGTCCAAAATGAGAATCTATGCATTTGGGGATTTACAATGCTATTATTCActttggaatgttttttttttacttgcatgtatttgcacaatatttttatacataattgCCACATATTACATAGTAATGTAATAAGTTGTACTTTCATTACATATTAAGTGAGATTCTTGCCAATGTTTGTTTCATGTCCCATGTGTCAATATAGAGCTGCAATAGGAAGACCAGCAGACGTTTTGTAATTTGTGTTTGTAATCAATGTAATTGCATGATAAAATGATGAAATGGGAGATGTAATGGATTTATTCTTAAATTATCATTGTGTATGaagtgtgctttttaaataaacttgttttgAAATGCaagaaaaa

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0008380 RNA splicing biological_process
GO:0071010 prespliceosome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0120114 Sm-like protein family complex cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005684 U2-type spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0071004 U2-type prespliceosome cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006004 False 1146 lncRNA 0.48 3 10261345 10288666
TCONS_00006006 True 1229 lncRNA 0.32 1 10287455 10288683

Neighbor

gene id symbol gene type direction distance location
XLOC_002620 strbp coding downstream 242551 9834896 ~ 10018794 (-)
XLOC_002619 NA coding downstream 599653 9646362 ~ 9661692 (-)
XLOC_002618 BX248511.1 coding downstream 723010 9534615 ~ 9538335 (-)
XLOC_002617 morn5 coding downstream 851277 9397305 ~ 9410068 (-)
XLOC_002616 mrrf coding downstream 914985 9305050 ~ 9346360 (-)
XLOC_002623 BX323065.1 coding upstream 30625 10319308 ~ 10332427 (-)
XLOC_002624 dbh coding upstream 275578 10564261 ~ 10607118 (-)
XLOC_002625 NA coding upstream 423495 10712178 ~ 10714227 (-)
XLOC_002626 NA coding upstream 495651 10784334 ~ 10787649 (-)
XLOC_002627 nrarpa coding upstream 572076 10860759 ~ 10864331 (-)
XLOC_002615 NA non-coding downstream 993634 9266053 ~ 9267711 (-)
XLOC_002612 NA non-coding downstream 1114703 9145508 ~ 9146642 (-)
XLOC_002611 BX323017.1 non-coding downstream 1119666 9141565 ~ 9141679 (-)
XLOC_002638 NA non-coding upstream 1606690 11895373 ~ 11898575 (-)
XLOC_002642 NA non-coding upstream 3010156 13298839 ~ 13301973 (-)

Expression


Co-expression Network