XLOC_026212 (kctd13)


Basic Information

Item Value
gene id XLOC_026212
gene name kctd13
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 15213980 ~ 15227666 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051127
ACAACAAGCAAGAAAGAGGAAGAAGACAGTTGAGCTGCGAGACAACAGAGGAAAATATGATTTGTAGAAAAATTATGACGAGTTTATTGTAAAAATACAACAGCCCGCTCGCGAGAACTTAATATTTGATGCACCTTATCGCGGTGGTGACCCAGCTCGGCAGCAGATAAGCAGTATTTGAGTTGTACTCCCCTGATGTCTGCCGAGGCATCTGGTTCGTCTGGTGGGCATGCGGTGACTGTGTCCGGGTCTTCCCCGTCATCCTCCAGCCATGTTGGGGAAGAAAAGCCTGGCAGGAGTCTGGTGAGCAGCAAGTACGTGAAGCTCAATGTTGGCGGAACTCTCCACTACACCACAGTCCAAACGCTCAGCAAAGAAGACAGCTTGCTCAGGAGTATTTGTGACGGGAGCACAGAGGTCAGCATCGACTCTGAAGGCTGGGTGGTGTTGGACCGATGCGGGAGACACTTTTCCCTGGTGTTGAACTTCCTGCGGGACGGGACAGTTCCTTTGCCAGATAGCACGAGGGAGCTGGAGGAGGTGTTGAAGGAGGCGCAATACTACAGACTTCAGGGTCTTGTGCAGCACTGCCTCTCCACATTACAGAAACGCAGAGATGTTTGCAGAGGTTGTCACATTCCTATGATAACTTCAGCCAAAGAGGAACAGAGGATGATAGCCACCTGTAGAAAGCCAGTGGTGAAACTGCAGAATAATAGAGGGAACAATAAATACTCCTATACCAGCAACTCTGATGATAACCTCCTGAAGAACATCGAGCTGTTCGATAAGCTGGGGCTGCGCTTTAACGGCCGGGTTCTGTTCATTAAAGACGTGCTGGGAGATGAGATTTGCTGCTGGTCTTTTTACGGCGAGGGACGCAAGATTGCTGAAGTCTGCTGCACCTCCATTGTTTATGCCACCGAGAAGAAGCAGACCAAAGTTGAGTTTCCAGAAGCTCGTATATTCGAGGAGACGCTCAACATTTTGATTTATGAAAATGGGCGTGGCTCGGGAGGAATGGCCCTGCTGGAGTCTGGGGGCGTTTCTTCATCGGGTGCAGGCCAATCAGAGGAGGAAGGGGCGGGTGCAGGGGGCGGAGACAGGCGTGTGAGGCGGATCCATGTGCGGAGGCATATTATGCATGACGAAAGGGGTCACGGACAGCAGACTGTCTACAAAGACTGAATCCCAAATGGTACTGACTCCTGGGAAATGATATGCATGTGAAAATAATATGGAAAAGCTGGTTGAGGGAAGAAAGACAGCTTGTCTAATACTGCACTGAAACGGGAGGGGAGTAATTATGGGGTAGTTTAGAAATAATGCTCAAGTTGCCACAGTGTGgtacagtcttttttttttttttttttgtctgtctgtgaGATAAATTTACATGATGTTTTTgttcaaataatttattattgagTTAATTTATTGTCCAGGATTTtcactttttcaagatttaatgtGAAATAAGTTGTGTTTGTATGGGGCGTGTGAACATTTTAACTGTGATTTAATGCTTACTTGAGAGGTACGCAGAGGAAGTGTTGTACAGGACTGTCAGATCTACTGCAAAACTGACCAAATGGGCGCAGCTTGTTGTTACTTACTTTAATATTGAGGAAAGGGGTCCAGTTTTATACCTAGTTttcataacacacaaaaaaagcttaaataatttcaaacaactGTGCCTCTCGGTTGGTGTGTAAAATTTAGGCCATATTTCTAAATCTGACATTGTTTTGTTCAAAATGGTGAtaatgctaacattatgctaatttgtTTTGCCACATCTTCActgaaattatgttattttattccTTCATCATTTGTTGACAAAATGGCTCCTGGCATAGAGTTATTATCACCACAAACTCACAAACACTTTCACAAAAATGTTTCAATGACTAATGTAAGCCATAAATGTGTGCACTCACTGTCCTAGACCAAATAAAAAAACCTAATTCTGCCAATTAAACTAATATATGTGGAATGCCGTCCGGATATTGTCTTGAAACTTTAATCAAATGGAAATAATATTCCATTAACATtttcaataaaagtttttttttgtagaa

Function

symbol description
kctd13 Predicted to contribute to ubiquitin-protein transferase activity. Involved in negative regulation of Rho protein signal transduction. Acts upstream of or within central nervous system development; neural precursor cell proliferation; and positive regulation of apoptotic process. Predicted to be located in nucleus. Predicted to be part of Cul3-RING ubiquitin ligase complex. Is expressed in brain; forebrain; hindbrain; midbrain; and retina. Orthologous to human KCTD13 (potassium channel tetramerization domain containing 13).

GO:

id name namespace
GO:0035024 negative regulation of Rho protein signal transduction biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0051260 protein homooligomerization biological_process
GO:0016567 protein ubiquitination biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0007420 brain development biological_process
GO:0061351 neural precursor cell proliferation biological_process
GO:0060322 head development biological_process
GO:0005634 nucleus cellular_component
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-162 Predicted to contribute to ubiquitin-protein transferase activity. Involved in negative regulation of Rho protein signal transduction. Acts upstream of or within central nervous system development; neural precursor cell proliferation; and positive regulation of apoptotic process. Predicted to be located in nucleus. Predicted to be part of Cul3-RING ubiquitin ligase complex. Is expressed in brain; forebrain; hindbrain; midbrain; and retina. Orthologous to human KCTD13 (potassium channel tetramerization domain containing 13).

Ensembl:

ensembl_id ENSDARG00000044769

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051127 True 2087 mRNA 0.43 7 15213980 15227666

Neighbor

gene id symbol gene type direction distance location
XLOC_026211 hirip3 coding downstream 3489 15193521 ~ 15210491 (-)
XLOC_026210 si:dkey-282h22.5 coding downstream 59109 15149540 ~ 15154871 (-)
XLOC_026209 antkmt coding downstream 69798 15132629 ~ 15144182 (-)
XLOC_026208 xpo6 coding downstream 82542 15130970 ~ 15131438 (-)
XLOC_026207 xpo6 coding downstream 94124 15085294 ~ 15119856 (-)
XLOC_026213 sez6l2 coding upstream 4515 15232181 ~ 15264732 (-)
XLOC_026214 pitpnbl coding upstream 104602 15332268 ~ 15352438 (-)
XLOC_026215 lat coding upstream 198119 15425785 ~ 15451097 (-)
XLOC_026216 si:dkey-56d12.4 coding upstream 214746 15442412 ~ 15444396 (-)
XLOC_026217 spns1 coding upstream 227653 15455319 ~ 15475080 (-)
XLOC_026205 CR788308.1 non-coding downstream 325812 14888052 ~ 14888168 (-)
XLOC_026204 NA non-coding downstream 338710 14873503 ~ 14875270 (-)
XLOC_026203 NA non-coding downstream 412016 14800662 ~ 14801964 (-)
XLOC_026202 NA non-coding downstream 475351 14738389 ~ 14738629 (-)
XLOC_026198 NA non-coding downstream 896102 14301000 ~ 14317878 (-)
XLOC_026220 NA non-coding upstream 390591 15618257 ~ 15625520 (-)
XLOC_026221 NA non-coding upstream 399603 15627269 ~ 15635508 (-)
XLOC_026225 NA non-coding upstream 458118 15685784 ~ 15706767 (-)
XLOC_026233 NA non-coding upstream 837207 16064873 ~ 16068537 (-)
XLOC_026237 NA non-coding upstream 1004843 16232509 ~ 16289826 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_04165535_04172272 KCTD13 misc CI01000034 null 4165373 ~ 4172272 (-)