XLOC_026213 (sez6l2)


Basic Information

Item Value
gene id XLOC_026213
gene name sez6l2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 15232181 ~ 15264732 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051128
TGCTTGTGTCCAGGCTGTTCTGTCATATTGAACCATGGTGTCCACAGTTTTTGCTGTGACACTGTCTGTCACACTGCTGCACCTGGCCTCAGgtgcaTCTTTAGGGACATCAGATCCTGAAGCTCCTCCCACCGTGACTTCTAGTCCCCGCCCCCTGGGAGATCTCATCCATGCTGCACTTCTGAGCAAGGAGTACCTGGGACACACTCCTGGCAGCAGAGGTACAACTACTAACCCGACCCAGGCCGTCCCGTCTATTAAAGAATCAGAGCCTGCCTCCACAGTGATGTCACCAGGAATACTCACCACTGCAGTGACATCATCGGCTGTGCCTCAAGCAGGCCAATTAGGCTTTGGGGGAGCCGTGACATCACTGCCAGCTGAAGAAGAGACCACAACCACTCTAATCACTACAACAACTATAACAACAGTGCACACACCAGTTCAGTGCAATGCCAGTCTGTCAGGAATGGAGGGAATAATCGAGTCTCCTGATCCGCTCTCATCCTCGTCTGCCTTTTCCCCACTGGAGTGCACCTACAGCATCACCGTCTATCCTGGATATGGCGTTGAGATACAGGTGAAGAAAGTAAACTTGTCCAAAGAGGAGTCCCTCACCATTTCGGATCTGGGTGGTGCAGCACTTGAGGTTTTGGCCAATGAGACGCTGATGAGCGAAGGTCAGGTGATTCGTAGCACAACCAATCAAGTGCAGATCCATTATAAGAGCCTGAAGCAAAACAATCATGGCGTTTTCAGCTTTCACTATCAAGCCTTCCTCCTGTCCTGTTCGTTCCCTCTCTCCCCTGAGGGCGGCGGAGTGACTGTAACTGATATACATCCTGGCGGTCAGGCTCACTTTCATTGTGATCCAGGGtttgaggtcagaggtcatgagGTTGCAACCTGTTTAAACTCTACCCGACCCAAATGGAGCACTCCAGAGCCCCAGTGTGTTGttaaaGCGGTGTCGTGTGGAGGATGGATCAGGAATGCTACAGTTGGTCGCATCCTTTCTCCAACCCTCCCCTCTGCAAGTAACCATAGCAGCGGAAGCAACCTGAGCTGCCATTGGCTGCTGGAAGCCAAGGAAGGCCATAGGCTCCACCTCCACTTTGAAAGGGTGGCTCTTGATGAAGACAATGATAAGCTGATTGTACGCAGTGGGAATAGCACGACAGCACCGCTCCTCTTCGACTCGGATCTGGATGATGTTCCGGAACGGGGCTTTGTGAGTGAAGGATCGTCTCTCTTTGTGGAGCTCACGGCAGATTCCTCCTCCATCCCACTGCTGCTGGCACTCCGCTATGAAGCCTTTGATGGTGAACACTGTTATGAACCTTACCTGCCTCATGGGAACTTCAGCAGCAGTGACATCACCTTCCCACTGGGAACTGTGGTATCGTTTTCATGTGCTGCTGGATTTGTGATGGAGCAGGGCTCAGGAGTTATGGAGTGTTTGGATCCCAATGACCCTCACTGGAACGAAACTGAACCGGTCTGCAGAGCTCTGTGTGGCGGTGAGCTCACAGATCCAGTGGGAACAGTGTTGTCTCCCGACTGGCCACAGAGCTACTCTAAAGGGCAGGACTGTGTGTGGCAAATACACGTCAGCGAGGACAAGCGCATCGAGCTGGATGTGCAAATTTTGAACATACGCCACAATGACGTTCTCACTCTGTTTGATGGCCATGATCTGATGTCGCACGTGATTGGTCAGTACATGGGCTCGAGAGAAAGGTTCAGGGTTGTATCGGGAGGTTCGGAGGTCACCATTCAGTTTCAGAGCGATCCCGATGACTCCACGTTTATACTGAGCCAAGGCTTTCTCATCCACTACAGAGAAGTGGAGCCGAATGACACGTGTTCTGCTCTTCCACAAATTGAGTTCGGCTGGAGCAGCTCCTCCCACCCGTCTCTGGTCAGAGGAAGTGTGTTGACCTATCAGTGTCAGCCGGGTTATGATATCGTCGGCTCTGACATCATTACCTGCCAATGGGACCTCACTTGGAGTAACAGCCCGCCCACCTGTGTGAAAATCCAGCAGTGTCCTGACCCAGGAGAAGTGGTCAATGGAGCTCGCTCTGTACATCCCGAGTCTGGTTTCGCTGTTGGAACGGTGGTACGCTTCACATGTAACCAGGGCTATCAGCTGGAGGGCCCGAGTCAGATATCCTGCCATGGCAGAGACACCGGAATGCCCAAGTGGAGCGACCGCAGCCCGAAGTGTGTCTTAAAATATGATCCATGCCCAAACCCGGGTGTGCCAGACAACGGCTACCAGACTCTGTACAAGCACAGTTACCAGGCCGGCGAGACACTGCGCTTCTTCTGCTATGAGGGCTACGAGCTCATTGGGGAAGTGATCATCAACTGTGTCCCAGGACACCCATCTCAGTGGAACAGCCCACCGCCCTTCTGTAAAGtggccTATGAAGGACTTCTGGATGATCATAAATTGGAGGTTTCTCAGTCATTAGACGCCTCCCATCAGATGCTGAGTGAGAACATTGCATTGGCTATCATCCTGCCAATCATTCTGGTCATCCTCCTGATTGGAGGAATCTACATGTACTACACCAAATTAAACAACAAACAATTGTATGGCTTCAGGCAAGAGACCCACTCCTACAGCCCCATTACAGTGGAGTCTGACTTCAACAACCCTCTCTATGAGGCAGGGGACACACGAGAGTATGAGGTGTCCATCTGAAGCGGCAGTCCACAAGCAAATCCAAATTGTGGTTTGAATGGAAAGGAGAAGAAACAGAAGAAATAcagttatttttctctctctttctctctctctgcaagactttcatttgttttcttcaTCGCAACACACAATTCCTACTCGGTCTCTCTTCTCCCTCTCAGCCGGCAACTTTAACAAGTGTGTTTGCTTGTGCGCTTATGCAGGTGCCTGTAGTATGtcagtgtgtgtttacatgtgtgtgtatgtctgttatTGACTGTAAATGTACACCAGAGTAAGGAAATACTGGAAGTGACAACAAAAAAGGTTGCAAGTACACATTGTAAGTATGAGCTTCACAGTCGGGCATGTTTTGTAACAAGGTTTGGTGCCTTATGGACTGAAAAAGGGATGAAGGAGTGGAAGAGAAAACGTgagatggggagagagagagaagtgagACAAAGatgaacaca
>TCONS_00051129
ATGGTGTCCACAGTTTTTGCTGTGACACTGTCTGTCACACTGCTGCACCTGGCCTCAGgtgcaTCTTTAGGGACATCAGATCCTGAAGCTCCTCCCACCGTGACTTCTAGTCCCCGCCCCCTGGGAGATCTCATCCATGCTGCACTTCTGAGCAAGGAGTACCTGGGACACACTCCTGGCAGCAGAGGTACAACTACTAACCCGACCCAGGCCGTCCCGTCTATTAAAGAATCAGAGCCTGCCTCCACAGTGATGTCACCAGGAATACTCACCACTGCAGTGACATCATCGGCTGTGCCTCAAGCAGGCCAATTAGGCTTTGGGGGAGCCGTGACATCACTGCCAGCTGAAGAAGAGACCACAACCACTCTAATCACTACAACAACTATAACAACAGTGCACACACCAGTTCAGTGCAATGCCAGTCTGTCAGGAATGGAGGGAATAATCGAGTCTCCTGATCCGCTCTCATCCTCGTCTGCCTTTTCCCCACTGGAGTGCACCTACAGCATCACCGTCTATCCTGGATATGGCGTTGAGATACAGGTGAAGAAAGTAAACTTGTCCAAAGAGGAGTCCCTCACCATTTCGGATCTGGGTGGTGCAGCACTTGAGGTTTTGGCCAATGAGACGCTGATGAGCGAAGGTCAGGTGATTCGTAGCACAACCAATCAAGTGCAGATCCATTATAAGAGCCTGAAGCAAAACAATCATGGCGTTTTCAGCTTTCACTATCAAGCCTTCCTCCTGTCCTGTTCGTTCCCTCTCTCCCCTGAGGGCGGCGGAGTGACTGTAACTGATATACATCCTGGCGGTCAGGCTCACTTTCATTGTGATCCAGGGtttgaggtcagaggtcatgagGTTGCAACCTGTTTAAACTCTACCCGACCCAAATGGAGCACTCCAGAGCCCCAGTGTGTTGCGGTGTCGTGTGGAGGATGGATCAGGAATGCTACAGTTGGTCGCATCCTTTCTCCAACCCTCCCCTCTGCAAGTAACCATAGCAGCGGAAGCAACCTGAGCTGCCATTGGCTGCTGGAAGCCAAGGAAGGCCATAGGCTCCACCTCCACTTTGAAAGGGTGGCTCTTGATGAAGACAATGATAAGCTGATTGTACGCAGTGGGAATAGCACGACAGCACCGCTCCTCTTCGACTCGGATCTGGATGATGTTCCGGAACGGGGCTTTGTGAGTGAAGGATCGTCTCTCTTTGTGGAGCTCACGGCAGATTCCTCCTCCATCCCACTGCTGCTGGCACTCCGCTATGAAGCCTTTGATGGTGAACACTGTTATGAACCTTACCTGCCTCATGGGAACTTCAGCAGCAGTGACATCACCTTCCCACTGGGAACTGTGGTATCGTTTTCATGTGCTGCTGGATTTGTGATGGAGCAGGGCTCAGGAGTTATGGAGTGTTTGGATCCCAATGACCCTCACTGGAACGAAACTGAACCGGTCTGCAGAGCTCTGTGTGGCGGTGAGCTCACAGATCCAGTGGGAACAGTGTTGTCTCCCGACTGGCCACAGAGCTACTCTAAAGGGCAGGACTGTGTGTGGCAAATACACGTCAGCGAGGACAAGCGCATCGAGCTGGATGTGCAAATTTTGAACATACGCCACAATGACGTTCTCACTCTGTTTGATGGCCATGATCTGATGTCGCACGTGATTGGTCAGTACATGGGCTCGAGAGAAAGGTTCAGGGTTGTATCGGGAGGTTCGGAGGTCACCATTCAGTTTCAGAGCGATCCCGATGACTCCACGTTTATACTGAGCCAAGGCTTTCTCATCCACTACAGAGAAGTGGAGCCGAATGACACGTGTTCTGCTCTTCCACAAATTGAGTTCGGCTGGAGCAGCTCCTCCCACCCGTCTCTGGTCAGAGGAAGTGTGTTGACCTATCAGTGTCAGCCGGGTTATGATATCGTCGGCTCTGACATCATTACCTGCCAATGGGACCTCACTTGGAGTAACAGCCCGCCCACCTGTGTGAAAATCCAGCAGTGTCCTGACCCAGGAGAAGTGGTCAATGGAGCTCGCTCTGTACATCCCGAGTCTGGTTTCGCTGTTGGAACGGTGGTACGCTTCACATGTAACCAGGGCTATCAGCTGGAGGGCCCGAGTCAGATATCCTGCCATGGCAGAGACACCGGAATGCCCAAGTGGAGCGACCGCAGCCCGAAGTGTGTCTTAAAATATGATCCATGCCCAAACCCGGGTGTGCCAGACAACGGCTACCAGACTCTGTACAAGCACAGTTACCAGGCCGGCGAGACACTGCGCTTCTTCTGCTATGAGGGCTACGAGCTCATTGGGGAAGTGATCATCAACTGTGTCCCAGGACACCCATCTCAGTGGAACAGCCCACCGCCCTTCTGTAAAGtggccTATGAAGGACTTCTGGATGATCATAAATTGGAGGTTTCTCAGTCATTAGACGCCTCCCATCAGATGCTGAGTGAGAACATTGCATTGGCTATCATCCTGCCAATCATTCTGGTCATCCTCCTGATTGGAGGAATCTACATGTACTACACCAAtGTGTGTAGGTGGCAGTGGAAGCCGATGTTCTGGAAGTCTCTCTCTCACACCCACTCCTACAGCCCCATTACAGTGGAGTCTGACTTCAACAACCCTCTCTATGAGGCAGGGGTAAGAgcttatcaagaaaaaatattatcagacatgctgtga

Function

symbol description
sez6l2 Acts upstream of or within brain development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain. Orthologous to human SEZ6L2 (seizure related 6 homolog like 2).

GO:

id name namespace
GO:0007420 brain development biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-189 Acts upstream of or within brain development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain. Orthologous to human SEZ6L2 (seizure related 6 homolog like 2).

Ensembl:

ensembl_id ENSDARG00000076052

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051128 False 3171 mRNA 0.51 19 15232181 15264732
TCONS_00051129 True 2697 mRNA 0.52 17 15234565 15264698

Neighbor

gene id symbol gene type direction distance location
XLOC_026212 kctd13 coding downstream 4515 15213980 ~ 15227666 (-)
XLOC_026211 hirip3 coding downstream 21690 15193521 ~ 15210491 (-)
XLOC_026210 si:dkey-282h22.5 coding downstream 77310 15149540 ~ 15154871 (-)
XLOC_026209 antkmt coding downstream 87999 15132629 ~ 15144182 (-)
XLOC_026208 xpo6 coding downstream 100743 15130970 ~ 15131438 (-)
XLOC_026214 pitpnbl coding upstream 67536 15332268 ~ 15352438 (-)
XLOC_026215 lat coding upstream 161053 15425785 ~ 15451097 (-)
XLOC_026216 si:dkey-56d12.4 coding upstream 177680 15442412 ~ 15444396 (-)
XLOC_026217 spns1 coding upstream 190587 15455319 ~ 15475080 (-)
XLOC_026218 nfatc2ip coding upstream 211804 15476536 ~ 15487111 (-)
XLOC_026205 CR788308.1 non-coding downstream 344013 14888052 ~ 14888168 (-)
XLOC_026204 NA non-coding downstream 356911 14873503 ~ 14875270 (-)
XLOC_026203 NA non-coding downstream 430217 14800662 ~ 14801964 (-)
XLOC_026202 NA non-coding downstream 493552 14738389 ~ 14738629 (-)
XLOC_026198 NA non-coding downstream 914303 14301000 ~ 14317878 (-)
XLOC_026220 NA non-coding upstream 353525 15618257 ~ 15625520 (-)
XLOC_026221 NA non-coding upstream 362537 15627269 ~ 15635508 (-)
XLOC_026225 NA non-coding upstream 421052 15685784 ~ 15706767 (-)
XLOC_026233 NA non-coding upstream 800141 16064873 ~ 16068537 (-)
XLOC_026237 NA non-coding upstream 967777 16232509 ~ 16289826 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_04174469_04189564 SEZ6L2 coding CI01000034 null 4174416 ~ 4189564 (-)
bowfin (Amia calva) AMCG00012291 NA misc CM030138.1 CM030138.1 14608810 ~ 14650327 (-)