XLOC_026215 (lat)


Basic Information

Item Value
gene id XLOC_026215
gene name lat
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 15425785 ~ 15451097 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051133
GAGCAAATGCAGTGAGCAGAGAAACCTAAAAGTCAAGTTCTTTTGCGGCAAAAGGCCCTGCAGATCAGGACGCTCCTCAGTGGCTCTTAAATTATAAAACTTAAGGAATTAACTTCAGCAGAAATGCGCAGGTTAAACAACTGACTACTAGGATTGTTTCAATTTGTGTTTGGGGAGCAAAAGTTGAGGAGCAAATTGTGAGCTGTGTGGGAGGAAGAATAAAAAATGGTGGCAGGTTTAGTGTGAAGCTGGTATGAGGTGTGACTGCTACAATCTGCAGAGTGAGTGAGAAGAGTCCAGTTTGGTTGCAGATCTCTGCTGAGAGTAAATCGTGCTGTGTTGTTTGCTGCTACTTATTGGTTATGGACTCCATTGAACTGCTGTCTATGGTGGGCGGTCTTCTCTTGCTGTCAATCATCTTCGCGACCGGCCTTTGTACATATTGCTGGGGACATAAACAACCAAcatcTATCCCACAGAGGCCCAGTGACTACAGTTCAGAATACAACTCACAATCCTCAGCATTTGGGTTACGGCATCCCCATTCGACATATGCGCCCCATCCAGATCACAGAATCACCGGCATACCTTACCCAATACACCCTTCGCTGAGCTCTCCATCTATTACCATCACAAAAGTTCCCTCCTGTCCTCCTTCAGAAACTGAAAGTCAAGCCAGTTATGTGAATCAAAGCGATCCCTCTTCTCTAGAAAACGAAAATGAGCTGAATATACATCCTCCAAGTGACTACATAGTTGTTCTTCCAGATTCTCCCACCGCACAGTTGCAGGAACGCAGTCGAGCTTCATCCCAGAGCTCAGGAGGAGACAATTATATCAACATAATTACAAAAGACGGGAATGTATCTGTGGACACATTTGGCTGCGACGTCAACTCCGACATAGAATCAGAAGGTCAAGACTATGAAAACTTTCCAAAGCCTCCAGAGCACtgtgGACTGTCCCGTGAAAGTCTAAGCAGTGATGGAGGAGGCAGCGCTGAATATGTCAACACTGGAAATGTCTGTCTCGGTGGGACGGAGCCTGATGACTGAATTCCAGTTCCAACTGGGTTTGCTTTTCATCAAGCGGCTAAAAGTGTCAGAGTCCTGAAGATCCGCCTGACTGACAAGAGTTTCCACGCTTGGGATatataaagtgaaaaaaaagcactgtcacttcacaggaAACTCCATATTTCACTTCCTAAATCCTTCTGACGATACCTGAGAATGTTTTATAGTCGTTGTTTTTAAGATTTGCAGTTTACAGTGTACCGCATCCAGTTTTCACTTCCAATAATAAGAGCACACAAGAAATGTTTGACTCCGCCATGTAAAATACAGCTTTTTATGTCTGAAATGTAATGAATTGTTTGTTATTGGTGTATAAATGAGGAAATAAACGTTTTAATAAATCC

Function

symbol description
lat Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in hindbrain and midbrain. Human ortholog(s) of this gene implicated in immunodeficiency 52. Orthologous to human LAT (linker for activation of T cells).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04014 Ras signaling pathway
ko04015 Rap1 signaling pathway
ko04064 NF-kappa B signaling pathway
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko04664 Fc epsilon RI signaling pathway
ko04666 Fc gamma R-mediated phagocytosis
ko05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
ko05135 Yersinia infection
ko01007 Amino acid related enzymes

ZFIN:

id description
ZDB-GENE-181226-1 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in hindbrain and midbrain. Human ortholog(s) of this gene implicated in immunodeficiency 52. Orthologous to human LAT (linker for activation of T cells).

Ensembl:

ensembl_id ENSDARG00000100334

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051133 True 1420 mRNA 0.44 13 15425785 15451097

Neighbor

gene id symbol gene type direction distance location
XLOC_026214 pitpnbl coding downstream 73347 15332268 ~ 15352438 (-)
XLOC_026213 sez6l2 coding downstream 161053 15232181 ~ 15264732 (-)
XLOC_026212 kctd13 coding downstream 198119 15213980 ~ 15227666 (-)
XLOC_026211 hirip3 coding downstream 215294 15193521 ~ 15210491 (-)
XLOC_026210 si:dkey-282h22.5 coding downstream 270914 15149540 ~ 15154871 (-)
XLOC_026217 spns1 coding upstream 4222 15455319 ~ 15475080 (-)
XLOC_026218 nfatc2ip coding upstream 25439 15476536 ~ 15487111 (-)
XLOC_026219 sgf29 coding upstream 38628 15489725 ~ 15496610 (-)
XLOC_026220 NA coding upstream 167160 15618257 ~ 15625520 (-)
XLOC_026221 NA coding upstream 176172 15627269 ~ 15635508 (-)
XLOC_026205 CR788308.1 non-coding downstream 537617 14888052 ~ 14888168 (-)
XLOC_026204 NA non-coding downstream 550515 14873503 ~ 14875270 (-)
XLOC_026203 NA non-coding downstream 623821 14800662 ~ 14801964 (-)
XLOC_026202 NA non-coding downstream 687156 14738389 ~ 14738629 (-)
XLOC_026198 NA non-coding downstream 1107907 14301000 ~ 14317878 (-)
XLOC_026225 NA non-coding upstream 234687 15685784 ~ 15706767 (-)
XLOC_026233 NA non-coding upstream 613776 16064873 ~ 16068537 (-)
XLOC_026237 NA non-coding upstream 781412 16232509 ~ 16289826 (-)

Expression


Co-expression Network