XLOC_026217 (spns1)


Basic Information

Item Value
gene id XLOC_026217
gene name spns1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 15455319 ~ 15475080 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051135
CAGAAACAAAACTGTAAGTCGGTCGGCTGCACGGTTCGATTCAAGTCTCTCCACTGCAGTACAAACATGTTCACGCAAGAGGTTAGGTAAAGACAGCCCGAAACATCTCGACATCCCAAAACGAACCCGACAGCGTCCACAGAAGAACTTTGAGGACGCCTCCGACTTCGCTTTGCATTTTCCAGCAGTGATGTCACAAGCAGATGCAGACATCACGCCCTTCTTCGCTGATGATAATGAAGGGGAGGGGCCTGTTGAAAATGGGGTGGGGTCACCTCTACCTGAGGACGAGGAGTCTCCCAGCGGAGTCACCGACAGGAGAGCCATAATGACTGTGATTGTGCTCTGCTACATCAACCTGCTGAACTATATGGACAGATTCACTGTGGCAGGTGTACTTCCAGACATTGAACATTTCTTCGGCATTGGTGATGGAACGTCAGGGCTGCTTCAAACAGTCTTCATCTGCAGCTACATGTTCTTGGCTCCTCTATTCGGATACCTGGGTGACCGGTATAATAGGAAGCTGATCATGTGTGTGGGGATTTTCTTCTGGTCTGTGGTAACACTTGCCAGCTCATTTATCGGGAAAGATCACTTCTGGGCACTGCTGTTGACACGAGGGCTAGTGGGTGTTGGAGAGGCCAGTTATTCCACCATTGCTCCCACCATCATCGCTGACCTCTTTGTCAAGGAAAAGAGGACTAACATGCtgtctatattttattttgccatcCCAGTGGGCAGtGGTATGGGTTATATCGTGGGCTCAAAGGTGGATACTGTGGCTAAAGATTGGCATTGGGCACTTCGGGTGACCCCTGGGCTGGGACTGCTGGCCGTGTTCCTCTTAATGCTTGTGGTTCAGGAACCGAAGCGTGGTGCGATTGAAGCTCACCCCGAGCACACGCTGCACAGAACCAGCTGGCTGGCAGACATGAAAGCACTTTGCAGGAATCCAAGTTTTATTCTGTCCACGTTCGGCTTCACGGCAGTGGCCTTTGTGACGGGATCACTGGCCCTGTGGGCTCCTGCCTTTTTATTTAGAGCCGGCGTCTTCACCGGAGTCAAGCAGCCGTGTTTTAAAGCTCCATGTGATGACTCTGACAGTCTGATTTTTGGCGCCATCACTGTAGTAACGGGCATCTTGGGTGTAGCGAGCGGTGTTCAGGCCAGTAAACTGCTGAGGACCAGAACTCCTCGAGCTGACCCGCTAGTGTGTGCAGCTGGACTCCTCCTCGCGGCTCCCTTTCTCTATCTCTCCATCATGTTTGCTCAGGCGAGCACTGTGGCCACATATGTCTTTATCTTCCTGGGAGAGACATTCCTTTCAATGAATTGGGCCATTGTTGCTGATATCCTACTGTATGTTGTGATCCCGACACGTCGCTCCACAGCAGAGGCCTTTCAGATTGTCCTTTCACACTTGCTGGGTGACGCTATTAGTCCGTATCTCATAGGAGTGGTTTCAGACTCAATAAAAGAATCAAATTCGTACATGTGGGAGTTTCGCTCACTTCAGATGTCTCTGCTGCTGTGCTCTTTCGTGGCCGTCGCTGGAGGCGCTTTCTTCTTGGCCACAGCCGTCTTTATTGAGAAAGACCGAGATCTCGCTGAGAACTATGTGCCCTCTGATGACGCACCAATTGTTGTTCCAAGGAGCGGCAGATCCACTAAAGTATCAGTGTCGAGTGTTTTAATTTGAGATGATGCAAAAGAGTGGATGGCTCTTGACATGCAGGGAACAGCACTCTGATTGGCTAAGGCAGACAGAGGCAGTGTCATCAgcagccaatcctggagcagtaTCAAACAAGTAATGACTGGACTATCTCCTCAATAGGaaattttatagtaatttattaagctttttttgttttgtttatatcctTAACACCTTGATTTGGGAACATTTCTAACTAACAAGAAAATCAGAAACCTCTTACCTGAAAACCCTAGTGTGCCGCTGGACCACTTTGTTGTTTCACCTGGAGGAGACAGAAGCACAAGGGTAAAACAAGACAACCGGGGACATTTATTTGCCTTTAATTAAAACTGTGTTTTAGACTTCAAGTCgcattttacgttttttttatcAGAAGGGATGTGAACTAAATCTTTAAATTGCTATTTATGGGTTCATTCATAGGTCAGCTCACTCATGACCAAACAAACTGCTGTTTCATTTGCTCTCATCAAAAACGGACAATGACTTAAAAACTATTTGGTCGGTCTTTCCTCTTGTTTTATGTCATCTCTTTCATACTACCATTGAGCTTTTACGGTCTTTTTGTAAGGATAACACAAACACTAATGCTACCATGGCATGATTCAGAtattaattcatgtttttttaaataacatttataatctCATTTGTTGCAATGGCCTGGTTCATGGCATGCCATTTTATTTGTCTGAAACTGTAAttattgtttagtttgtttttaaatgaagacaGTTTCTTGTGCATTCCCTCTGCTATGGTTGTTTTCCAGGCGATACTTTTCAGATAATTTGCAAACTTGCAACTCGTTAATCTTGTTttgtaaccttttttgttttttaatattaaatgagaaatttaatctGA
>TCONS_00051136
ATGTCACAAGCAGATGCAGACATCACGCCCTTCTTCGCTGATGATAATGAAGGGGAGGGGCCTGTTGAAAATGGGGTGGGGTCACCTCTACCTGAGGACGAGGAGTCTCCCAGCGGAGTCACCGACAGGAGAGCCATAATGACTGTGATTGTGCTCTGCTACATCAACCTGCTGAACTATATGGACAGATTCACTGTGGCAGGTGTACTTCCAGACATTGAACATTTCTTCGGCATTGGTGATGGAACGTCAGGGCTGCTTCAAACAGTCTTCATCTGCAGCTACATGTTCTTGGCTCCTCTATTCGGATACCTGGGTGACCGGTATAATAGGAAGCTGATCATGTGTGTGGGGATTTTCTTCTGGTCTGTGGTAACACTTGCCAGCTCATTTATCGGGAAAGATCACTTCTGGGCACTGCTGTTGACACGAGGGCTAGTGGGTGTTGGAGAGGCCAGTTATTCCACCATTGCTCCCACCATCATCGCTGACCTCTTTGTCAAGGAAAAGAGGACTAACATGCtgtctatattttattttgccatcCCAGTGGGCAGtGGTATGGGTTATATCGTGGGCTCAAAGGTGGATACTGTGGCTAAAGATTGGCATTGGGCACTTCGGGTGACCCCTGGGCTGGGACTGCTGGCCGTGTTCCTCTTAATGCTTGTGGTTCAGGAACCGAAGCGTGGTGCGATTGAAGCTCACCCCGAGCACACGCTGCACAGAACCAGCTGGCTGGCAGACATGAAAGCACTTTGCAGGAATCCAAGTTTTATTCTGTCCACGTTCGGCTTCACGGCAGTGGCCTTTGTGACGGGATCACTGGCCCTGTGGGCTCCTGCCTTTTTATTTAGAGCCGGCGTCTTCACCGGAGTCAAGCAGCCGTGTTTTAAAGCTCCATGTGATGACTCTGACAGTCTGATTTTTGGCGCCATCACTGTAGTAACGGGCATCTTGGGTGTAGCGAGCGGTGTTCAGGCCAGTAAACTGCTGAGGACCAGAACTCCTCGAGCTGACCCGCTAGTGTGTGCAGCTGGACTCCTCCTCGCGGCTCCCTTTCTCTATCTCTCCATCATGTTTGCTCAGGCGAGCACTGTGGCCACATATGTCTTTATCTTCCTGGGAGAGACATTCCTTTCAATGAATTGGGCCATTGTTGCTGATATCCTACTGTATGTTGTGATCCCGACACGTCGCTCCACAGCAGAGGCCTTTCAGATTGTCCTTTCACACTTGCTGGGTGACGCTATTAGTCCGTATCTCATAGGAGTGGTTTCAGACTCAATAAAAGAATCAAATTCGTACATGTGGGAGTTTCGCTCACTTCAGATGTCTCTGCTGCTGTGCTCTTTCGTGGCCGTCGCTGGAGGCGCTTTCTTCTTGGCCACAGCCGTCTTTATTGAGAAAGACCGAGATCTCGCTGAGAACTATGTGCCCTCTGATGACGCACCAATTGTTGTTCCAAGGAGCGGCAGATCCACTAAAGTATCAGTGTCGAGTGTTTTAATTTGAGATGATGC
>TCONS_00051137
TGAGCTTGTAAATCAGAAACAAAACTGTAAGTCGGTCGGCTGCACGGTTCGATTCAAGTCTCTCCACTGCAGTACAAACATGTTCACGCAAGAGGTTAGGTAAAGACAGCCCGAAACATCTCGACATCCCAAAACGAACCCGACAGCGTCCACAGAAGAACTTTGAGGACGCCTCCGACTTCGCTTTGCATTTTCCAGTGATGTCACAAGCAGATGCAGACATCACGCCCTTCTTCGCTGATGATAATGAAGGGGAGGGGCCTGTTGAAAATGGGGTGGGGTCACCTCTACCTGAGGACGAGGAGTCTCCCAGCGGAGTCACCGACAGGAGAGCCATAATGACTGTGATTGTGCTCTGCTACATCAACCTGCTGAACTATATGGACAGATTCACTGTGGCAGGTGTACTTCCAGACATTGAACATTTCTTCGGCATTGGTGATGGAACGTCAGGGCTGCTTCAAACAGTCTTCATCTGCAGCTACATGTTCTTGGCTCCTCTATTCGGATACCTGGGTGACCGGTATAATAGGAAGCTGATCATGTGTGTGGGGATTTTCTTCTGGTCTGTGGTAACACTTGCCAGCTCATTTATCGGGAAAGATCACTTCTGGGCACTGCTGTTGACACGAGGGCTAGTGGGTGTTGGAGAGGCCAGTTATTCCACCATTGCTCCCACCATCATCGCTGACCTCTTTGTCAAGGAAAAGAGGACTAACATGCtgtctatattttattttgccatcCCAGTGGGCAGGTA

Function

symbol description
spns1 Predicted to enable transmembrane transporter activity. Acts upstream of or within autophagosome maturation and cellular senescence. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Is expressed in yolk syncytial layer. Orthologous to human SPNS1 (sphingolipid transporter 1 (putative)).

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0097352 autophagosome maturation biological_process
GO:0055085 transmembrane transport biological_process
GO:0090398 cellular senescence biological_process
GO:0006869 lipid transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020228-1 Predicted to enable transmembrane transporter activity. Acts upstream of or within autophagosome maturation and cellular senescence. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Is expressed in yolk syncytial layer. Orthologous to human SPNS1 (sphingolipid transporter 1 (putative)).

Ensembl:

ensembl_id ENSDARG00000011925

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051135 False 2593 mRNA 0.45 13 15455319 15475067
TCONS_00051136 False 1523 mRNA 0.51 12 15456199 15470944
TCONS_00051137 True 760 mRNA 0.49 5 15468652 15475080

Neighbor

gene id symbol gene type direction distance location
XLOC_026215 lat coding downstream 4222 15425785 ~ 15451097 (-)
XLOC_026216 si:dkey-56d12.4 coding downstream 10923 15442412 ~ 15444396 (-)
XLOC_026214 pitpnbl coding downstream 102881 15332268 ~ 15352438 (-)
XLOC_026213 sez6l2 coding downstream 190587 15232181 ~ 15264732 (-)
XLOC_026212 kctd13 coding downstream 227653 15213980 ~ 15227666 (-)
XLOC_026218 nfatc2ip coding upstream 1456 15476536 ~ 15487111 (-)
XLOC_026219 sgf29 coding upstream 14645 15489725 ~ 15496610 (-)
XLOC_026220 NA coding upstream 143177 15618257 ~ 15625520 (-)
XLOC_026221 NA coding upstream 152189 15627269 ~ 15635508 (-)
XLOC_026222 si:dkey-93n13.1 coding upstream 160866 15635946 ~ 15645405 (-)
XLOC_026205 CR788308.1 non-coding downstream 567151 14888052 ~ 14888168 (-)
XLOC_026204 NA non-coding downstream 580049 14873503 ~ 14875270 (-)
XLOC_026203 NA non-coding downstream 653355 14800662 ~ 14801964 (-)
XLOC_026202 NA non-coding downstream 716690 14738389 ~ 14738629 (-)
XLOC_026198 NA non-coding downstream 1137441 14301000 ~ 14317878 (-)
XLOC_026225 NA non-coding upstream 210704 15685784 ~ 15706767 (-)
XLOC_026233 NA non-coding upstream 589793 16064873 ~ 16068537 (-)
XLOC_026237 NA non-coding upstream 757429 16232509 ~ 16289826 (-)

Expression


Co-expression Network