G708736


Basic Information

Item Value
gene id G708736
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 41974081 ~ 42291085 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU805967
CTCGGTTCTTTTGTTCAGTAGTGTGtatagcagtggttctcaaccttttTTTGGGGTACTGGAACCACTGCATATTTTGAGGCAAGGCAGGCAAGGTTTTGAGCAGTCCTTAGGGACCTTCACCCCCTCTATATTGTATGTAAAGTTAGTGGAAACCTTGTGGTACTGAATACATTCATTATACTTTTTGATTTCACGGACCCCTAGGTGTCCATGGAcgatgtagtttggtcctctacggtttgaatggaatagaggagatttcacgttgtaacttttttatgttgcagtgtttttgtacatgagttgttgtattttggtactgtcaacactgaaagcacctagcaatgtattggggatgtgtgttttaccttgctcctgtgtagaacaacttgtcagatggGGACTGATGTGtttctgtcctgtcttttcacaatactattgGAGATCAACATAAAGCCTAAAAGACAGCCGTGGTgtcgctcttcatttcttggttctcctgtggtaCATAAGAAACCCGCTACACTTTGGCATATGATTGCTGTAAataagtgtgttagctagcatacaccgatgtaattgtcccttctaagttgatatcagattttagcccctgctagggcagatggcacacagacagcagaactggggacagatatgcagggacagagagtctcaggtaagtttgttgcaccccatatacagtcagtgtacagtaccattgccacctactgtccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctggttgtaaaagcacatatacctgcatacatactggactgataaggaacactgcttttaactattattagtagtagtattaaaatgatttgaacaagttgggacaacccttcagttcactactgtacctatcaattatccagtagtagtgattatggttcctcaatatacatttaacatattacagcactacttttggtgttttttcaggaattgctcttgagaaaatgtcatgtaattgtcccctccaaagttgatatcagattttagcccctgctagggcagatggcacacagacaacagaactggggacagatatgcagggacagactggcagagacagggagtctcaggtaagtttgttgcaccccatatacagtcagtgtacagtaccattgccacctactgtccagtatgtatgcaggtatatgtgctacaaccagcaataccaagaaaggctgggtgtaagcacatatacctgcacacatactggactgataaggagcactgcttttaactattattactgtccagtatgtatgcaggtatatgtactacaaccagcaataacaagaaaggctggttgtaaaagcacatatacctgcatacatactggactgataaggaacactgttTTTAATTttgattagtagtagtattaaaatgatttgaacaagttgggacaacccttcagttcactactgtacctatcaattatccagtagtagtgattatggttcctcaatatacatttaacatattacagcgtaggctatgtgttacagcactacttttggtgttttttcaggaattgctcttgagaaaatgtcatgtaattgtcccttctaagttgatatcagattttagcccctgctagggcagatggcacacagacagcagaactggggacagatatgcagggacagactggcagagacagggagtctcaggtaagtttgttgcaccccatatacagtaccattgccacctactgtccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctgggtgtaagcacatatacctgcacacatactggactgataaggagcactgcttttaactattattagtagtagtattataatgatttgaacaagttgggacaacccttcagttcactactgtacctatcaattatccagtagtagttattatggttcctcaatatacatttaacatattacagcgtaggctatgtgttacagcactact
>TU805959
ACACCACAACCTGTTACCGGCTATCCTACCTAGTAACAGTACAGACCAATCAAAATAACCTAAGCCACCTggcccacacatgcacacaccagaGAGGTAGCGCTCCTCACAACTTTACAGGGAGACCACTGGACAGGCAGCATTTCGCTCCACACACCCAACCAGGACTACATTCAAGttgatatcagattttagcccctgctagggcagatggcacacagacagcagaactggggacagatatgcagggacagactggcagagacagggagtctcaggacctgagccctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctggctgtgctgctgctccagtttcaactgacctgagccataggaccatgccccaggaatacctgacatgatgactccttgctgtccccagtccacctgactgtgctgctgctccagtttcaactattctgccttattattattcgaccatgctggtcatttatgaacatttgaacatcttgaccatgttttgttataatctccacccggcacagccagaagaggactggccaccccacatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccgccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttatgtacagcactttgagatatcagccgatgtacgaagggctatataaaataaatttgattgatttgattgattatggttcctcaatatacatttaacatattacagcgtaggctatgtgttacagcactacttttaggtttttcctttcctttaacaaaacaataaaaccatttcatgttcatatttaacaacactatggttgaatgaatctctcaccacatcgacttctgcactgccacccagaaaaagagggaacttggaacttacctcagtttaatttatgatcctaggaggacatctacgggcctttttaagtactacacctattatattCGATCAGAAAcgggagggataaacaggagataggcctgtgcaccttaaaactaaccagttgaaacgaaacacaattatattcaaaacctaac
>TU805964
ACACCACAACCTGTTACCGGCTATCCTACCTAGTAACAGTACAGACCAATCAAAATAACCTAAGCCACCTggcccacacatgcacacaccagaGAGGTAGCACTCCTCACAACTTTACAGGGAGACCACTGGACAGgcagcatttcgctacacacacCCAACCAGGACTACATTCAAGcccctgctagggcagatggcacacagacagcagaactggggacagatatgcagggacagactggcagagacagggagtctcagGGGCGTAACAACAGCACCACTTGTCCCTGCACTACttggtcctctacggtttgaatggaatagaggagatttcacgttgtaactttTTTATGTTGCAGTGTTTATGTACATGAGTTGTATTTTTGTACTGTCAACCTGAAAGCACCTAGCAATGTATTGGGGATGTGTTTTTACCTTCCTCCTCTGTAGAACAACTTGTCAGATATGTTCACCATTGTTGCAGctattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttgatgcactctg

Function

NR:

description
PREDICTED: basic immunoglobulin-like variable motif-containing protein isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU805967 False 2042 lncRNA 0.41 4 41974081 42221908
TU805959 False 1126 lncRNA 0.46 3 42179267 42291085
TU805964 True 549 lncRNA 0.46 5 42219636 42291085

Neighbor

gene id symbol gene type direction distance location
LOC118965611 NA coding downstream 245094 41725469 ~ 41728987 (-)
LOC110529916 LOC106571797 coding downstream 1004603 40958142 ~ 40969478 (-)
LOC118965517 NA coding downstream 1174044 40779851 ~ 40800037 (-)
LOC110529912 LOC106571799 coding downstream 1194450 40724397 ~ 40779631 (-)
armc2 armc2 coding downstream 1304580 40638271 ~ 40669501 (-)
klhl18 klhl18 coding upstream 49597 42340682 ~ 42420087 (-)
puf60a puf60 coding upstream 140706 42431791 ~ 42526586 (-)
mycb myc coding upstream 1308669 43599754 ~ 43602305 (-)
LOC118965613 NA coding upstream 1468244 43759329 ~ 43763318 (-)
efr3a efr3a coding upstream 1893908 44184993 ~ 44436559 (-)
G708769 NA non-coding downstream 31625 41932539 ~ 41942456 (-)
G708762 NA non-coding downstream 42560 41883351 ~ 41931521 (-)
G708764 NA non-coding downstream 44129 41911585 ~ 41929952 (-)
G708761 NA non-coding downstream 89655 41870434 ~ 41884426 (-)
G708758 NA non-coding downstream 106799 41850901 ~ 41867282 (-)
G708852 NA non-coding upstream 35257 42326342 ~ 42326630 (-)
G709096 NA non-coding upstream 138333 42429418 ~ 42430176 (-)
G709197 NA non-coding upstream 289190 42580275 ~ 42627363 (-)
G709263 NA non-coding upstream 420458 42711543 ~ 42711868 (-)
G709282 NA non-coding upstream 439813 42730898 ~ 42741496 (-)
slc22a16 LOC106571810 other downstream 2014468 39956961 ~ 40017167 (-)
G706683 stxbp5 other downstream 2747768 39219644 ~ 39226313 (-)
G704874 NA other downstream 3660278 38313489 ~ 38313803 (-)
G704702 NA other downstream 3935735 38037725 ~ 38038346 (-)
LOC110530908 otof other downstream 4481924 37474229 ~ 37626960 (-)
G709272 NA other upstream 428686 42719771 ~ 42720699 (-)
G709454 NA other upstream 879675 43170760 ~ 43171082 (-)
G711133 NA other upstream 2247708 44538793 ~ 44539504 (-)
G712814 NA other upstream 3166692 45457777 ~ 45458248 (-)
crfb16 LOC106568648 other upstream 4020045 46309732 ~ 46325685 (-)

Expression


Co-expression Network