XLOC_026218 (nfatc2ip)


Basic Information

Item Value
gene id XLOC_026218
gene name nfatc2ip
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 15476536 ~ 15487111 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051138
AAGTCCAAATTTGTTCTGTGACGTCACGTCGAGAGCGCGCACGGGAATGAGCCCGCACAAAAGGACTATGGCTGAAACGATATCGGACAGTGATCTCCCAGTGTCAGACCCTCCAAAACAACCTCCCAAACGCCGCCGCATCATCGACGCCTCATCCATCCAAACAGTACCTGTTTACTCCAACAAGgtGAACAGATCCTTGAATCTGAAGCCAGaattatttaaacaaaccaaTCTTACAGAAGAGGAAAAGGGTGGTCCTCTGTGGTCTCCTTCCCCACCCCGTAAAGAGAAACCGCCAATCAGTATTGATCTAAGTAGCTCAGAGGAGGAGCCAGAACAGACTGAACCTCAGGAAATCCTTCGTTCCCCTTCTCCACCTCCTCCACCATGTAGTCCGCCAGTGAAACGGAGCAGGCGGGCCAACCAAAAAATGCGAGAAATCAACCGGAAACTGGATGCGATCGGCTCTCTTGTGTGTATGTCTCCTGAGCCTCAAGACCCCGTCGTCGAATACAGAAACTCTCCTTCGCCTGTCAATgactatgatgatgatgatgacatcaTCATCGTTTCATCTAACAGCAAACACAAACGTCGTCCCTGCAATACTGAGGGCAGAGACTCTGCGCGAGAAATTTCATTAAAGTTTCGCTGCCGAACAGAGTTGTTCAAAATCCCAATACTGTCTACGGCTCCTTTGAGTAAAGCTGTGGAACAACTGGCCATCAAACTCAATGTCCCTTCCAGCCAAATTCTGTTATTAAAGAAAGATATCGACCTTCCCATTCACTCGTCTGTCAGTGAGCTCGGCCTCGGCATAGCTGACATTATAGATTGTGTTGTAACCGAAAAAATACAAGAAGAGACTGACAAAAGTGATGTCATCACTGTGCGACTGCAAGGCAAAGAGAAATCATCTGTGCAGGTGTATTCACTGAAGAAGacTGCTCCTATCGGGTCCATTCTGTCTCAGTATGTCTCTAGTATGGATGTGAGTGCAAGACGGAGGGCTAAATTCCTCTTTGACGGGTCAAGGGTCTCCAATAATCAGACTCCGGCTGAGCTGGACATGGAGGACGGTGATGTCATTGAAGTCTGGGCCTAAACGCATGCAACTATTGATGTTTGTCCTTTTTGTACTTGCGCCATGTTCTGTATGCAATGTGGTGTGAAAATTGTGTGGTTTGCAAAAAGAAAATGtctttgaattgaattgactttTTACTTGTGATGAGTTTGGTCTACACTGTTATTTTGGGGCAGGGGTTTCATAAACGATACACATTTGACTTGTGTTTGCAGCCATGTGAAAGTTAccttttacaattttacattgtGTATATACTATTtaagatttgatttattttaatgtaaagaattaacttcaattaaaataatttgataaaataACAAA
>TCONS_00051139
ATATCGGACAGTGATCTCCCAGTGTCAGACCCTCCAAAACAACCTCCCAAACGCCGCCGCATCATCGACGCCTCATCCATCCAAACAGTACCTGTTTACTCCAACAAGGTGGGAATTTCTTGGCTGTTTAAGAAGAGGAAAAGGGTGGTCCTCTGTGGTCTCCTTCCCCACCCCGTAAAGAGAAACCGCCAATCAGTATTGATCTAAGTAGCTCAGAGGAGGAGCCAGAACAGACTGAACCTCAGGAAATCCTTCGTTCCCCTTCTCCACCTCCTCCACCATGTAGTCCGCCAGTGAAACGGAGCAGGCGGGCCAACCAAAAAATGCGAGAAATCAACCGGAAACTGGATGCGATCGGCTCTCTTGTGTGTATGTCTCCTGAGCCTCAAGACCCCGTCGTCGAATACAGAAACTCTCCTTCGCCTGTCAATgactatgatgatgatgatgacatcaTCATCGTTTCATCTAACAGCAAACACAAACGTCGTCCCTGCAATACTGAGGGCAGAGACTCTGCGCGAGAAATTTCATTAAAGTTTCGCTGCCGAACAGAGTTGTTCAAAATCCCAATACTGTCTACGGCTCCTTTGAGTAAAGCTGTGGAACAACTGGCCATCAAACTCAATGTCCCTTCCAGCCAAATTCTGTTATTAAAGAAAGATATCGACCTTCCCATTCACTCGTCTGTCAGTGAGCTCGGCCTCGGCATAGCTGACATTATAG

Function

symbol description
nfatc2ip Predicted to be involved in positive regulation of transcription by RNA polymerase II. Orthologous to human NFATC2IP (nuclear factor of activated T cells 2 interacting protein).

GO:

id name namespace
GO:0001816 cytokine production biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9520 Predicted to be involved in positive regulation of transcription by RNA polymerase II. Orthologous to human NFATC2IP (nuclear factor of activated T cells 2 interacting protein).

Ensembl:

ensembl_id ENSDARG00000011360

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051138 False 1417 mRNA 0.44 9 15476536 15487111
TCONS_00051139 True 726 lncRNA 0.49 5 15477964 15486391

Neighbor

gene id symbol gene type direction distance location
XLOC_026217 spns1 coding downstream 1456 15455319 ~ 15475080 (-)
XLOC_026215 lat coding downstream 25439 15425785 ~ 15451097 (-)
XLOC_026216 si:dkey-56d12.4 coding downstream 32140 15442412 ~ 15444396 (-)
XLOC_026214 pitpnbl coding downstream 124098 15332268 ~ 15352438 (-)
XLOC_026213 sez6l2 coding downstream 211804 15232181 ~ 15264732 (-)
XLOC_026219 sgf29 coding upstream 2614 15489725 ~ 15496610 (-)
XLOC_026220 NA coding upstream 131146 15618257 ~ 15625520 (-)
XLOC_026221 NA coding upstream 140158 15627269 ~ 15635508 (-)
XLOC_026222 si:dkey-93n13.1 coding upstream 148835 15635946 ~ 15645405 (-)
XLOC_026223 zgc:66474 coding upstream 159081 15646192 ~ 15668433 (-)
XLOC_026205 CR788308.1 non-coding downstream 588368 14888052 ~ 14888168 (-)
XLOC_026204 NA non-coding downstream 601266 14873503 ~ 14875270 (-)
XLOC_026203 NA non-coding downstream 674572 14800662 ~ 14801964 (-)
XLOC_026202 NA non-coding downstream 737907 14738389 ~ 14738629 (-)
XLOC_026198 NA non-coding downstream 1158658 14301000 ~ 14317878 (-)
XLOC_026225 NA non-coding upstream 198673 15685784 ~ 15706767 (-)
XLOC_026233 NA non-coding upstream 577762 16064873 ~ 16068537 (-)
XLOC_026237 NA non-coding upstream 745398 16232509 ~ 16289826 (-)

Expression


Co-expression Network