G708827


Basic Information

Item Value
gene id G708827
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 42246963 ~ 42310645 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU806086
CCTTTATCATGTAACACATCTCTTCCACTATATGTGTCACAGAAAAGTAGTCAGGGTTATGAGGTATTTTCCTCTGTCTAGGCAGCAAGTGCCCTTCTCCCAGTTTACAAACGAGATCTATTATGTCAATAGGATTTGAAAATTCACCTTGTACCAAGTCATTACATACGTAACTGcctaaccttacctaaccctaaacctaacttaaccattctaaaaaactataccttaccctaaacctaaccctaagcttaactattctaaaaaactataccttaccctaaccctaacccagactacaGCAAATCATCCACCTCTTAACCTTAACCTCAATcctactcctaaccttaacccctccccaaacctcacgcctaaccttaacctttccctTAACCCCACACCTAACCTTTCCCTTAACCCCACGCCTAACCCTAAATGTGTACCATCTCCCTAACCAGGGTTCTCATCCTAGCTCCCCTCCCTCACACTAATCCTGACCCCCCTATGGAAAGTGATCTGCACCAATCACTAAACCAAAACACTTCCTGTCTCTTCTCCCTTGTCATCAATAGTCAATCAACAGACAATTATCATACCCCTAGTAACCACATTTTCACATAGAATTAGACccctacatcaatcaatcaaacaactTCTCTACAGTTCAGCACACTTACATACCACTCAAACCATACAGAATCATTTCAGCATTTAGAAAGAACAAAAACTTAAAGGACCTCCTCACCAAAGCAAGATTcagtagtaagccaccacaagacctcaattacatgtacactttgcaacaatacattggagaaaccaaacacaccatagaaaccagactcaaacacctgtataac
>TU806087
CCTTTATCATGTAACACATCTCTTCCACTATATGTGTCACAGAAAAGTAGTCAGGGTTATGAGGTATTTTCCTCTGTCTAGGCAGCAAGTGCCCTTCTCCCAGTTTACAAACGAGATCTATTATGTCAATAGGATTTGAAAATTCACCTTGTACCAAGTCATTACATACGTAACTGcctaaccttacctaaccctaaacctaacttaaccattctaaaaaactataccttaccctaaacctaaccctaagcttaactattctaaaaaactataccttaccctaaccctaacccagactacaGCAAATCATCCACCTCTTAACCTTAACCTCAATcctactcctaaccttaacccctccccaaacctcacgcctaaccttaacctttccctTAACCCCACACCTAACCTTTCCCTTAACCCCACGCCTAACCCTAAATGTGTACCATCTCCCTAACCAGGGTTCTCATCCTAGCTCCCCTCCCTCACACTAATCCTGACCCCCCTATGGAAAGTGATCTGCACCAATCACTAAACCAAAACACTTCCTGTCTCTTCTCCCTTGTCATCAATAGTCAATCAACAGACAATTATCATACCCCTAGTAACCACATTTTCACATAGAATTAGACccctacatcaatcaatcaaacaactTCTCTACAGTTCAGCACACTTACATACCACTCAAACCATACAGAATCATTTCAGCATTTAGAAAGAACAAAAACTTAAAGGACCTCCTCACCAAAGCAAGATTcagtagtaagccaccacaagacctcaattacatgtacactttgcaacaatacattggagaaaccaaacacaccatagaaaccagactcaaacacctgtataac
>TU806088
CCTTTATCATGTAACACATCTCTTCCACTATATGTGTCACAGAAAAGTAGTCAGGGTTATGAGGTATTTTCCTCTGTCTAGGCAGCAAGTGCCCTTCTCCCAGTTTACAAACGAGATCTATTATGTCAATAGGATTTGAAAATTCACCTTGTACCAAGTCATTACATACGTAACTGcctaaccttacctaaccctaaacctaacttaaccattctaaaaaactataccttaccctaaacctaaccctaagcttaactattctaaaaaactataccttaccctaaccctaacccagactacaGCAAATCATCCACCTCTTAACCTTAACCTCAATcctactcctaaccttaacccctccccaaacctcacgcctaaccttaacctttccctTAACCCCACACCTAACCTTTCCCTTAACCCCACGCCTAACCCTAAATGTGTACCATCTCCCTAACCAGGGTTCTCATCCTAGCTCCCCTCCCTCACACTAATCCTGACCCCCCTATGGAAAGTGATCTGCACCAATCACTAAACCAAAACACTTCCTGTCTCTTCTCCCTTGTCATCAATAGTCAATCAACAGACAATTATCATACCCCTAGTAACCACATTTTCACATAGAATTAGACccctacatcaatcaatcaaacaactTCTCTACAGTTCAGCACACTTACATACCACTCAAACCATACAGAATCATTTCAGCATTTAGAAAGAACAAAAACTTAAAGGACCTCCTCACCAAAGCAAGATTcagtagtaagccaccacaagacctcaattacatgtacactttgcaacaatacattggagaaaccaaacacaccatagaaaccagactcaaacacctgtataac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU806086 False 860 lncRNA 0.41 3 42246963 42310645
TU806087 False 860 lncRNA 0.41 3 42253104 42310645
TU806088 True 860 lncRNA 0.41 3 42254573 42310645
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118965611 NA coding downstream 517976 41725469 ~ 41728987 (-)
LOC110529916 LOC106571797 coding downstream 1277485 40958142 ~ 40969478 (-)
LOC118965517 NA coding downstream 1446926 40779851 ~ 40800037 (-)
LOC110529912 LOC106571799 coding downstream 1467332 40724397 ~ 40779631 (-)
armc2 armc2 coding downstream 1577462 40638271 ~ 40669501 (-)
klhl18 klhl18 coding upstream 30037 42340682 ~ 42420087 (-)
puf60a puf60 coding upstream 121146 42431791 ~ 42526586 (-)
mycb myc coding upstream 1289109 43599754 ~ 43602305 (-)
LOC118965613 NA coding upstream 1448684 43759329 ~ 43763318 (-)
efr3a efr3a coding upstream 1874348 44184993 ~ 44436559 (-)
G708820 NA non-coding downstream 28465 42216344 ~ 42218498 (-)
G708810 NA non-coding downstream 65096 42174275 ~ 42181867 (-)
G708804 NA non-coding downstream 72137 42140957 ~ 42174826 (-)
G708796 NA non-coding downstream 120243 42115738 ~ 42126720 (-)
G708735 NA non-coding downstream 244885 41976502 ~ 42002078 (-)
G708852 NA non-coding upstream 15697 42326342 ~ 42326630 (-)
G709096 NA non-coding upstream 118773 42429418 ~ 42430176 (-)
G709197 NA non-coding upstream 269630 42580275 ~ 42627363 (-)
G709263 NA non-coding upstream 400898 42711543 ~ 42711868 (-)
G709282 NA non-coding upstream 420253 42730898 ~ 42741496 (-)
slc22a16 LOC106571810 other downstream 2287350 39956961 ~ 40017167 (-)
G706683 stxbp5 other downstream 3020650 39219644 ~ 39226313 (-)
G704874 NA other downstream 3933160 38313489 ~ 38313803 (-)
G704702 NA other downstream 4208617 38037725 ~ 38038346 (-)
LOC110530908 otof other downstream 4754806 37474229 ~ 37626960 (-)
G709272 NA other upstream 409126 42719771 ~ 42720699 (-)
G709454 NA other upstream 860115 43170760 ~ 43171082 (-)
G711133 NA other upstream 2228148 44538793 ~ 44539504 (-)
G712814 NA other upstream 3147132 45457777 ~ 45458248 (-)
crfb16 LOC106568648 other upstream 4000485 46309732 ~ 46325685 (-)

Expression

G708827 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 1.
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G708827 Expression in each Bioproject

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G708827 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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Co-expression Network