XLOC_026225


Basic Information

Item Value
gene id XLOC_026225
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 15685784 ~ 15706767 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052978
GCAGTGAGGGAGAAGAACAGCGGGCGCGAGTGTGAAACAGAACCGCAGTGGATCACATGCAGAAGAACAGCCCACGTTTATATTGTAGTGATACAAAAAAGACACAAGATAGAATAAACTAATTCTTCATTCTGGTAAATCTCAATTCTGTAGCACCTCTTTAAACTTTCACGTGCCTGCGGATTCATTTCAATTCAAAATGAGAAGGATTATGCTGATTTTCGCACTGGATTAAGTTCTCAACCACTAAATTCCCACAGTTCATACGGACTAAACAAAACGCTTGATACATAAAAGTTCACACAAGCATCTTGGGAATGGATCCAAACCCTGACCCCAGCGTTCCCACTGCTGCCCCTGCAGAACAGCAACAACCAGAGCAAGAGACCAGCAGTCAGCAGCCGGGCACAGATACAGAGATCGCCGCCAACACCACTCAGCCGATCAAGAGTGAGCAACAAGATCCACCCCCTCCCACAACACCTACTCCTGCTGTGGTAGACTCCGCCCACATTCAAGAAGCCCCACCCAAAGACCACCTGACAGTCATTGACGAGAACATGGAAACAAGTAATGGTGTTTGCTCGGCTCCTAAGGACAGTTCGCCGAGTGCTTCTTCCCCTCCTCGCCAGCTTCACGCCAAACCCAATCACGCGCACGCTAACGGCCGTGCCAGGCTGAGCAGCCGCTCTGGGTCAGTGAGTCATGCTGGGTCACCTCGACCGTCGCTCAGCCGTCAGCCCAGCGCAGCCACTGACGCTGGAGGAGACGGATCCAAACCCAACGACTTTCTGGTATGGGCAATTCTGGCCTGCCTCTGCCCTGTCTGGCCCATCAACATCGTAGGCTTGACCTTCTCAGTGatgTCTCGGAACAGCCTTCAGCAGGGTAATGTGGATGGTGCACGTCGTCTTGGCAAGAATGCAAAGATCCTGTCTATCGTGTCACTGGTGGGGGGGATTGTCATCATCGTTGTTACTATCGTCATCAACTGGGGTGTAATACTGAAGACCTGATGGCCATCAGAGTTCTTTAACCTCAACAGACCCCAGTGACCATCATTTCTTCATCATTCTTCTCTACATCTGAATGCTCTTGAATGCTTTTCCAGTTTGTTTTATTCTCGGTCTGAGAAGCTGGATGCTATCTTTACCTTCTATCATCTCAGAACTATcaaaaaaaaccaacaacattGATTCTTCATCTCTTCGAATGCCCTGGATCACGACCAAAGgcatgcatgtttgttttttcctctgttttttttaaacaaaggagATGATGTCAGCGAGGAGACCACCAACATGATCTCATTCCATTCGTCACAGGCCCCACGAGGATGTGAAGGAGGAGAAGAAGCAGAACGAAAACCATTGATCAGTTTATGAGACGTATTTTCATGCATAGGATCTCTCGGAAGCCAGAATCCATCCAGAAAAGATGGGATCGATTACATAAAACAGCAGATGGCTTCTGCATTGGCATCAACCCACAGATTTACTATTAAAGCTGCTCTCGGTTTTCATATTTCCTCCAAAACTGAGATTTTTTTCTTGGCTTAAACGTTTCTTATTGGACACACTGATTGTATCTAAGGTGTGAAAGAACTGCATCAGATCTTCGTTTTGTTCCCACACAGATATTACGATGCAGGTTATCACAAATAGATGGAAAAAAAAACGATGTATCAGAGACTGAAGGAGGGAGAGGTGAAGAGAAGGCGAGGCTGCGGTCTTTTGTTTCATACAGAAGGAgggataaagagagagagagagagagggatacaGGAGGAAAGGAGGGGCTTCAGATGAAAAGATACCCCAGAGATGAGGAGATGGAGGGAATGCAGTAGAGGGATCTGGGCGGCTTCTGATTGGctagctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagtgtgaaGAATCCAATACCGTGATTCTCTCCAACATGCCCTCCCTTCTTCCTTACAGCAGTGCTCAGCCAGATCCTTCAAGGCTAACAAAAAAAGACGaagaaatcattaattcattGTGTTTCAACTGTAATGTTTACAATAGAATCAGACTCTTGAACGTTATGGGATGTTTTACATGAGCTTACAAGCTGTTTGTTCGCATTTGTTTTAGGTTAACAGAATGATACCTGGATTATTCCTGGTCAggccacacaccacacacacaccaactGTGCCAAACGTCAGAATCTTGCCAAGACTCCAGCTGTTTGTGACTGAAAGAGGAAACGAGCGCATGAATGCATATTAAGAAGGCATTTGTGTAGGGATGCACTGATTTTAACAAATCTAGCCCCATACTGATAATGCTGATTAGTTGACACTGacgaaaaatatttgtaaaagatcAATGTCGTTTTtatctaaatcagtgtttcttaaccacgttcctggagaagCAACAGCACTGCACATTTGCATGCCTCCTTACCCAAACCCACCTGAATCAGATCATCACCTTGTTAGCAGAAACtgatgctgcgtcccaatttgcatacttatacttcgccctaaaagtatgttctttttttgtggaggaaaagtatgtacttttgagtgtgtaacagaagagtatgcaagctttgggacatactaattcctTGTTAATAAATCGTTGTCCACATTTCATATTCAGTTACCTAcattattggagaagcagcagcaggataatctcACATTCacgcagagaaatctcctcaggtcttctTTAGATAATTAAACAGAATTCATTCAGAAGTCCGAACATATCTTGACTTGACTTCACATTGTTGTTGTAGATGAAATATAACATGGAAATCGTGATTTAAATATGTTCCAGTTGGCTATATGTTGATTTTCAGGCATTCAAACAACTTTATGAAGCCTTTCTAATTGATCATTGGTCTTGTgcatccgccatgtttgtagtttattcaCACTTTTTACCCGattttgtagttctaatcaaatttatGTCCAACGCGCactgtattgtgggcaatatcatCGGTTAGAGTATGGATGGTTTGAATATTTAGGGAATAGTAAACCgtccgggaacctttggcatactctttccAACATACTATGGTGTGGGAtttactaattctattttcgaatACTTTTAGGATGGATggtatgcgaattgggacacaGCATGAAAGACCTGAAATGGGTGTGACATACAAAGGAGATGTCCAAAACATGCAGTTCCGGTtttcctccaggaacgtggttgagaaacactgacttaaATTAATGATATAAATAAAGACTAAAAGTACATTTAGGCTTGAAAATAATTGAGAAATTCTAAAATTGTCAAAATTGAGCATTTCTAAAgggttatttaatgtttttttaaagattaagtgAGATGATTTTGATGATGTAAAGTAgtttaaaatgatctaaaatgtattaaatgagcAGActggataaaaataaaaactgcagatACTTTCAATATCATTTCAAATAGGAtgactgataaataaataaataaataaataaataaataaatattgagctAACTAATAGATTACAGATGACTCAGATGATTAGACTCCAATATCAGCTAAAAagtcaaaaatacaaaataaaagaaattaggATTCATAATTTATCgctcatacaataaaaaaataaattattggcCCTTATGtgaaattttaatacatttttaactagCGCTGGGCCGATAAACGAAATCATATCCAAAGGCGacaaaatttatgtcaataacaatgataagtcctggatttttttactctatattgatctaagagcgaAAAAATGTGCAGCAATGGGAGTCTAAAAGTGTGTTCATATCAGATGTAACAAATTTATTggctgaaaatatgttatgccatttaatgcaGCCTCTAAtatttgtggcttcagtcattgctgtggtactcttttaaatctggaagcattaacaaatgatattgaaatatatatcattatcgttcaatatggaaaataattatcgtgattgcatttttgccatatcacccagccctttttttttttaactatttcccaagtgttgtttaacagTGAAATGATTCTTAAACATAAGggtttttaataactaatttctttttaatttgccTTGATGGCAGTACCTAATATTTCACCAgtcattttgcaagatactagtattcacctTAACAAGGTTAACTATGTTAATCAGTTAATctggcaagtcattggacaagagtagtttgttctgtagccaattgaagAGCTACATTTCATAAtaacattttcagttttaattttcaatatttatttagtccagtcaaactaaaaagaaattagactttctccagaagaaaaaataaaataggaaaataTTGAACAAAAGAATTGAACAACTTGCTCAATCACATATGCAATATCAGGAAAATAACCCATCCAACAGCAAATCAAAAAATAGGACCAaactataaatgtaaaaaaaaatcagccaaCAACCAAATATGACTCCTGCTATCGTGCATCCCTTcatatatttgtaattctttcaCAGATAACATCACAAATCCCTCATTCTCATGACTTCAGGTTTCTCGCACACAGAATGTGATGATGTTtacagtttttcccagagacgaGGGCACTTCCTTACTCTTCTAAAATCAAGTACTCTTATTTTTTTACGAGGCAAAACCTTTGCTGTGTAGCACTTTGTAAATGTGCATCTTCCTCACTATCAAAGTGTTTTGGGTAGTGAGAGTCTGACATTTTTATGGCTTGCAGTGGGTTTGGTTTTCATGAACGGACGGGGCTACAATcttcattttaatacatttcagtTAGCCATTAAATATGAATGAGCGTAGCATGCACATTTGATCCATCTCGGCGTGCGGTCAGTGAATGCCAGCTTGACTTTTGTTCTCTTGAATAGTTCTGCTCAGCTATTTAAATTTAACCTGCAGCTTACACATTCACGCTTGTATATATATAGAGTATATACACAAcgtatgtatatatgtgtctgTACATATTTGAACCGCGTCTGGTGATCACAATCTCTCTTTCCGTGGGGATGAACAGTGTCCATAAAATGCAAATCTTGACTGTTAACACTGCAGTGCTTTCACAAATTTGATCACCgttcagtattttttattattatcggTGTGTATTTTGAGATCGCCCTCTCTGTTTTGTATGCCGTTTGTGCTTTGCTAAACATTTCGACTTTACAAGCATGTTTACACAGCGATTTCAGATGGCCTATGCTGCACAAGTGTGATAAATATATGAAGAAATGTTTCAGACACCAGCCGAGTTGTCCAATTCTCTGGGTTACAAATTCTACCTGCTGTTTagagtatatagtatatatatataagcatatatATGTGTCGATAATAAATGCGTTTTTGTGTTTCGCAAACATGCCatcccatatagaaatctgatggATACATAGCGGGGGAAGGTGCAACGGAGGCCGGCTAGCAAATTGCTATAAAGGTGACAGATGCTAGAGACCAAAGTCTTTAGACTcgttgttagagcaaccgactccagttcgatcccagctcagaatgGGATGTAGTAGGACCgatgggttacatgtgggggctcgtccgggatgggagtgaggtttaggggggtgagtataacgaaggccagctagcgaagtgttATGCAAGTAATCCcattcctctgacctctaaaggttctctagcaacagacgctaaaGGTCTAGTCCTTAGCgcccttgttagagcaaccaatgCCGATACAAAGAATCaccagttcaatcccagctcagatcGTAATGGATGtagtaggaccagtgggttacacatGAGGGcttgtccgggatgggagtgaggtttagggaggTGAGTGTAACGAAGGCCAGATAGCGAAGTGTTATGCAGGTAATCTCACCTCTCTGACCTCATAAGGTGCCCTAGCGACAGACCCTAGAGGCCATTGTCTTTAGcctcttgttagagcaactgactcccatacaaagaatcaccagttcaatcccagctcagatcGTGTTGGatgcagtaggaccagtgggttacacatGAGGGcttgtccgggatgggagtgaggtttagggaggTGAGTGTAACGAAGGCCAGATAGCGAAGTGTTATGCAGGTAATCTCACCCCTCTGACCTCATAAGGTGCCCTAGCGACAGACCCTAGAGGCCATTGTCTTTAGcctcttgttagagcaactgactcccatacaaagaatcaccagttcgatcccagctcagaccgggaTGGGTAAAGTAGGACCGGTGTTTTatatgtgggggctcgtccgggatgagagtgaggtttagggggtgaatGTAGCAGAGGCAGGCTAGTGacgtgctatgcaggtaaacctcactcctctgaccttaaAAGGTGATTAGCAATGAACGCTAGGGGCCATGGACTTTAGCTAACTTGTAAGAGGAACCGTCGTCCATGCAAAGTATTTCTGGTTCGATTCCTGCTCAGAACCGTATGGGTAAAGTAGGACTGGTGTTTTAcatttgggggctcgtccgggatgggagtaaggtttaggggtGTGATTGTAACAGAGTCcggctagcgaagtgctatggaggtaaacctcactcctctgaccttaaAAGTTGATTAGCAACGGACGCTAGGGGCCATGGACTTTAGCTACCTTGTAAAAGCAACCGTCGCCAATGCAAAGTATTGCTGGTTTGATTCCTGCTCAGAACGGTATGGGTAAAGTAGGACTGGTGTTTTACTTtagggggctcgtccgggatgggggGTAAGGTTTAGGGGTGTGACTGTAACAGAGGCTGACTAGCGAAGTGCTAtggaggtaaacctcactcctctgaccttaaaaggtgctctagcaacagaggctagaggccatggtctttagcctccttgttagagcaaccgactcccatacaaagaatctctggttcgatcccagctcagaccggaATAGGTGCAATAGGACCGATGGGACAATAAATGCTGCATGTTTAAGCAATTATTCCATTTGAAATGATGACAATAGTAATTATATTCATGTTTGTCATGTGTGACAGTGAAAATGCAACATCATCTCAACAACCCACATATAAATTATACAAgggaaatccaaatatgaacttgtatatcATTTATGCGATTTGCATAAATCACCATACATCAGATTTCCATGTGGGTCTTGCcaatttaactgcattttggtGAAAGCACCCGTGCTACTCAAGACTTTTTCCTCTGTGACATGAATAGATTTGAGAGGCATTATGATTACTCCTATTCTTGCAAATATAATCCTGAGTTTGTGCAGATCTGCCTGTGCATGCCTTAATGAATTGCTTTGGAACAACAATATGTGACGATGTACACTGTATCGGAAGCCAAGCGTTTGATAGGTCTTGCGGTATTGATGCTTATTCTGCTCTGTACTGACAGTGAATAAACTGACCCTCATTATGCC
>TCONS_00051151
GTCTGGCCCATCAACATCGTAGGCTTGACCTTCTCAGTGatgTCTCGGAACAGCCTTCAGCAGGGTAATGTGGATGGTGCACGTCGTCTTGGCAAGAATGCAAAGATCCTGTCTATCGTGTCACTGGTGGGGGGGATTGTCATCATCGTTGTTACTATCGTCATCAACTGGGGTGGTGAGTATGCTTACCGTGAGTAA
>TCONS_00052450
AGTTCTCAACCACTAAATTCCCACAGTTCATACGGACTAAACAAAACGCTTGATACATAAAAGTTCACACAAGCATCTTGGGAATGGATCCAAACCCTGACCCCAGCGTTCCCACTGCTGCCCCTGCAGAACAGCAACAACCAGAGCAAGAGACCAGCAGTCAGCAGCCGGGCACAGATACAGAGATCGCCGCCAACACCACTCAGCCGATCAAGAGTGAGCAACAAGATCCACCCCCTCCCACAACACCTACTCCTGCTGTGGTAGACTCCGCCCACATTCAAGAAGCCCCACCCAAAGACCACCTGACAGTCATTGACGAGAACATGGAAACAAGTAATGGTGTTTGCTCGGCTCCTAAGGACAGTTCGCCGAGTGCTTCTTCCCCTCCTCGCCAGCTTCACGCCAAACCCAATCACGCGCACGCTAACGGCCGTGCCAGGCTGAGCAGCCGCTCTGGGTCAGTGAGTCATGCTGGGTCACCTCGACCGTCGCTCAGCCGTCAGCCCAGCGCAGCCACTGACGCTGGAGGAGACGGATCCAAACCCAACGACTTTCTGGTATGGGCAATTCTGGCCTGCCTCTGCCCTGTCTGGCCCATCAACATCGTAGGCTTGACCTTCTCAGTGatggtgagtgtgtttgtgtgttcaggaGCTGTATGGATACAATTTCTGCAAAGTAAAAGCTGGTCACCTTTTCACTTCATTATGCAAAACAAGGCAAGtttatatagcatatttcatacactatggtaatttaaagtgctttgca
>TCONS_00051152
GCAGTGAGGGAGAAGAACAGCGGGCGCGAGTGTGAAACAGAACCGCAGTGGATCACATGCAGAAGAACAGCCCACGTTTATATTGTAGTGATACAAAAAAGACACAAGATAGAATAAACTAATTCTTCATTCTGGTAAATCTCAATTCTGTAGCACCTCTTTAAACTTTCACGTGCCTGCGGATTCATTTCAATTCAAAATGAGAAGGATTATGCTGATTTTCGCACTGGATTAAGTTCTCAACCACTAAATTCCCACAGTTCATACGGACTAAACAAAACGCTTGATACATAAAAGTTCACACAAGCATCTTGGGAATGGATCCAAACCCTGACCCCAGCGTTCCCACTGCTGCCCCTGCAGAACAGCAACAACCAGAGCAAGAGACCAGCAGTCAGCAGCCGGGCACAGATACAGAGATCGCCGCCAACACCACTCAGCCGATCAAGAGTGAGCAACAAGATCCACCCCCTCCCACAACACCTACTCCTGCTGTGGTAGACTCCGCCCACATTCAAGAAGCCCCACCCAAAGACCACCTGACAGTCATTGACGAGAACATGGAAACAAGTAATGGTGTTTGCTCGGCTCCTAAGGACAGTTCGCCGAGTGCTTCTTCCCCTCCTCGCCAGCTTCACGCCAAACCCAATCACGCGCACGCTAACGGCCGTGCCAGGCTGAGCAGCCGCTCTGGGTCAGTGAGTCATGCTGGGTCACCTCGACCGTCGCTCAGCCGTCAGCCCAGCGCAGCCACTGACGCTGGAGGAGACGGATCCAAACCCAACGACTTTCTGGTATGGGCAATTCTGGCCTGCCTCTGCCCTGTCTGGCCCATCAACATCGTAGGCTTGACCTTCTCAGTGatggtgagtgtgtttgtgtgttcaggaGCTGTATGGATACAATTTCTGCAAAGTAAAAGCTGGTCACCTTTTCACTTCATTATGCAAAACAAGGCAAGtttatatagcatatttcatacactatggtaatt

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0045161 neuronal ion channel clustering biological_process
GO:0045162 clustering of voltage-gated sodium channels biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0051234 establishment of localization biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0007601 visual perception biological_process
GO:0042551 neuron maturation biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0007626 locomotory behavior biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0006812 cation transport biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0051648 vesicle localization biological_process
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0070032 synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0099513 polymeric cytoskeletal fiber cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0022804 active transmembrane transporter activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0005215 transporter activity molecular_function
GO:0015662 ion transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function
GO:0008017 microtubule binding molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0016887 ATPase activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0015399 primary active transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000081299

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052978 False 7486 lncRNA 0.41 5 15685784 15706767
TCONS_00051151 False 198 processed_transcript 0.51 2 15694215 15697300
TCONS_00052450 False 774 lncRNA 0.52 2 15697117 15703664
TCONS_00051152 True 994 processed_transcript 0.50 3 15697131 15706767

Neighbor

gene id symbol gene type direction distance location
XLOC_026224 zgc:66443 coding downstream 6677 15669952 ~ 15679107 (-)
XLOC_026223 zgc:66474 coding downstream 17351 15646192 ~ 15668433 (-)
XLOC_026222 si:dkey-93n13.1 coding downstream 40379 15635946 ~ 15645405 (-)
XLOC_026221 NA coding downstream 50276 15627269 ~ 15635508 (-)
XLOC_026220 NA coding downstream 60264 15618257 ~ 15625520 (-)
XLOC_026226 mvp coding upstream 1652 15708419 ~ 15734530 (-)
XLOC_026227 dhrs7b coding upstream 142624 15849391 ~ 15859397 (-)
XLOC_026228 cramp1 coding upstream 152845 15859612 ~ 15889508 (-)
XLOC_026229 nme3 coding upstream 283780 15990547 ~ 16000168 (-)
XLOC_026230 mrps34 coding upstream 296355 16003122 ~ 16010968 (-)
XLOC_026205 CR788308.1 non-coding downstream 797616 14888052 ~ 14888168 (-)
XLOC_026204 NA non-coding downstream 810514 14873503 ~ 14875270 (-)
XLOC_026203 NA non-coding downstream 883820 14800662 ~ 14801964 (-)
XLOC_026233 NA non-coding upstream 358106 16064873 ~ 16068537 (-)
XLOC_026237 NA non-coding upstream 525742 16232509 ~ 16289826 (-)
XLOC_026241 NA non-coding upstream 925343 16632110 ~ 16664028 (-)
XLOC_026245 BX470185.2 non-coding upstream 1193476 16900243 ~ 16903280 (-)
XLOC_026246 NA non-coding upstream 1895719 17602486 ~ 17604149 (-)

Expression


Co-expression Network