XLOC_026228 (cramp1)


Basic Information

Item Value
gene id XLOC_026228
gene name cramp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 15859612 ~ 15889508 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051156
ATGGTGAAGAACAAGGAGCAGGTGCGCCATTTCTACTACCGGACTTGGCACAAGATCTCAAAACACATCGATTTCAACAATGTGTATTCACGTGTGCTGAAAAAGTCCTCTCAGGAGCTCTATGGCCTCATCTGTTATGCTGAACTCAGGAAGAAGGTTGGAGGATTGATGGATGACAAAAACGTGGCCAAACTAAATGAGCTTATCCAACAGGGGGCCACCACAGTGCGTTCCAAAGGCAGAAACCTGAGGATCAAAGCTCCCATGTGCCGCGCACTGAAGAAAATCTGCGACCCTGATGGTGTGAGTGATGAGGAGGATCAGAAGCCTGTACGTTTACCCTTGAAAGTGGCCGTGGAACTTCAACCCCGGAGCAATCACTCTTGGGCTCGGGTTCAGAGTCTAGCCCATAATCCTCGGCTCAGgaTGGTCATCGAATTGCACCGGAAGGTCTCCACTCTTATTGAATTCCTGAAGCAAAAGTGGGCCGTCCAAGATCAGCGAATTCGCAAGAGCTTGGCAGAACGAGAAGCTCTTGATGGCCTGGCCCAGTCTAGCGAGTCCGAGGAGCTGTTCTTGTTTCCAGCAGAGAGCAGCACAGTTACTGCTTTGCCTGGTGTTGCTCGAGTCGTGCACTCAAAAGCTTCCTGCACGGTACATTGGCAGGAGAGTGGACGAGGACGGACGGGTATTAGAGACTTGCCTGCCGCTCACATTCTGGGAATTCAGCCTGCTAGAGGAAAATCTGGCAAGCCTGGCCCAGTAGGAGGAGACTCGAAAAGAACCGACGGACATCCCGTTGAAGGTTCTGATAGTAGTAGCACTTCAGCTGCCGGTTTAGAGACCAGTGCAAATCCAAACGTGAACACTACCTCTCCAGTCAGTCCAACCATCACTTCATTGCTGCCCATTGGCCCTGAGGGAAATCCAGCAGGGTCTGCAGAGCAAGAGCCTGCAAGTCAGACTCAGACCGATGCTGGTGGGGGGGACAAACAAATTGAGACTGTCACTCAGGGAGACCCCGCCTCTTCAGAGGGCCGGACGGATGAGCCTGGAACAGCAGGAGGGGTTGCGTCAGAAAAAGCACTGCCACAATCAGAAGCTCAAGGACGTGTTGAGGAAGTGGTCGGGACTGGACGATCTCCTCAACAGATCCGAGAGGAAGGCTGGAGCTCACAGGTCTCTGAGAATGTGACGCTGGCAGAACTCTACCTCATGCTGGGCAAGCCAGGGAAACTACAACTGGAGTATGAATGGCAGTCCAAGCCAAACCCCCCCTCAGTTCTACCCAACTCTCAAAATGTGCTTCGGTGTCTCCTGAGGCTTGTGTCATCAGAGGTCAACCCTAAACCTACCCCAGAGGTGTGTTCAGTTGGTACTTCACCACTCAAGTCAGGTCAAGAGGAGTCATCTGTGACTCCTCCAGGCAGGACTCCAGCTGGGGCCAACCGCAGTCCTAGCTGGGGTCGACAGCAGCATGCAGCACGCTCAAAAATACTTCTGAACAATCCAGGTGGAAGGAACCTGCCGCGCTCATTGCTGGCCTCCGGAGGAGACAGTGAAGGGTTTGCTGTCCCGACGACCCTGCCTCCAAACAGCTCCCGTCAATCACGGATGTTCTCCCCTAATAAGGAGGCAGAGCTCGCTTTTCGCCAACAGCTGGACTCCATCAGTTCAGATATATTTTCGAAGCAGCGGAAAATAGGGAGGGGTCGTCCACTGAGGAAACCTCTGGTGGTTCAGAGAACATTGCTGCCACGAACAGCAGGAGACACCTCGCCTCATGTGTGCTCCTTCTCCATCCTCTCAAATTCATCTGCTACAGGCACTGGATCTTTTCGTCCGATACAAACACGTCTTGCCCCAAACCGCCAACCCTCCTCAAAAGCATCATCCTCTACCGGTAGTCCTGCACCTGTTACTCAGCTCTCCAGTGCAATTGATCTGGCAGCAAAATCTGCAGGCATTATCCCTGGCAGTCCCTGTCGTGAAGTAGAGGCCCCTAGTATAGACAAGGCCATTGTGGAGTCTGAGGACGCCATGGGCTCTGCACCTGCAGCACCTGAGATGGAGCCTGATATACTGGACCAGGAGCCTTCTGAGGAATCCCTGCAGAATGGCGTTTCTCCACCATCACCAGGAGGCGGAGAGTCTCTTTTAGCCCCACCTAGTGTTGCCTCCCTACTGGATATCTCCCTGCCAGGCCCCCCAGAGGAGTCTCTTCCTTCTGGAGAGCCACAAACTCAAATTAGCGACTCCATTATTGAGCTCGCCATCAACTCGCACTATGGAGATGGATCATTGCTCTCACCTCCTAAGCTGAATGGGAGTGATAGATCTAAGCTCCTTCCCTCTTCATGTGACAGCTGGATGCCGTCCCCCACTCACGACCCTCAGTGGTACCCCAATGACTCTACGGATTCAAGCCTGGGCTGTCTGCTCTCAAGTCTGGCATCTCCTGATAAGACGAGAAGGACAGCCCTGCCCCCATCCAGTAGCACAGCCTTACTTGGGCCCAGTTTACTAGACAGCAACTCCCACGATTGTTTTCAGTCCCGCGGCCTGCCGGACGCAGCCGAGGTGGATACCCAGCTGGCCTGTATGATGAGCGAGAGCAGCGTCGACTACATCGCCCGCTTCAATGACCTCGCGCAGGAACTGTCCGTCACAGAGACGACCCTCCCACCTCCTCATGGAGACTGATGCATGAGGTGGAGCCCATCACTGCCTCGCCTCTTTCATATTGGACCGAAGAATGTTAACCAGAGTGCGACAGAGCTGTAGGAAGTGCAATAGACTGGCAGGGTCCACGACAGCCTTTGGgctctaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgatcattCTGTGGCTGTTGTCTTATGAGTCACACCCAGGAcacttaaacaacaacaaaatctccAGTTTACAGCGCGACCTCATGTATAGAAAACATAAGACCTGCCATATTGTCTGTATATCCGTCTTTTCTTGTCTTTGTCTTTTGTTTGCATGCGTGTGCATGCATCTGTAAGTGGAGCCGCGGATTGTACGCGTGTTTTGTCTTTGTGACTTTCAATtgtacaaaacacatttttgaaaaaCCCTCTAAAGCCATAGGAGATTGTGTGGACACACTCCGTGTATGAGACGCGCTTTACTCTGACCTCACAATCTGGTTGGGTTATTTTTACCTGAATGTTTGAGTTGGTGAAAGCCACACTACTAAAAGGGACAAGGGCTCCTTTTCGTGCGATTATTATCATTACAGGGACTGAATATCTAACAAACTCTAAACACAATGACTGATAACACAAATGCAGTGTAGTTGCATCAAAGGTAGGGTTGAACTTGTTACCTTAAATTTATTACGCTATTGTTCCCACGACACTAGGATTTTTGTTTCCTGCCGAATGAATATGAAGCCAATAAGTGGTAGATTCTGAAACTAAGTTTTCCAGACtttaagcgtgtgtgtgtgtacataattGTGAGTGTTTGCACAGATGTAAATATACAATAACAGAACCCAGTATTTACTGCTTTTGTAACATATTGTAAATGAttgtcatttgaattatttattgataactcaatgaggcagtgtttttttgtttgtttaacaagCCACATGCAGGCATTTAGGAGCTAAACTCCTGTTTTAAAGAGTTCTGTGTTGTTAAAAGAGGGGTTTGACCCTGATGTGTATAAATAGAGCTACAACAACTCCACCTTGCGTCTGGTCAGTTTTCATTTACTATCACTGAGATACTATTGAAGTTATTAATAATTTGCATTCacttttatttgacatatttgtctgttaaatcatttttttcaacTTGGTTTTTtgggtttaatttttttagttcatCTTATTGAAAGCATAAAATTCCATTACAAATATTTTCaagtaactgttttttttttttagcttgaaaAGGGTTAAAATATGTGCCCTCTCTTAATTTTTAAtatcttaattttgacttatttcttctaaaagtgaaaacaaaataatacttttacttgctctacaaattttttaacatttggactagaaatgagacgaAGCAAAGCAAGAAACATTATCGCAATAtcacatttttccaatattgcgcagctctaatatatataaagtagggcttaacaatatatcatttaagcatcaatattgcaatgtgtacCACAATGTGCATGAGGccgtataagattctgacagtatgataaccttgaataaaaataacagttttatgctattgtgattactgctgtaaaatttataaaactataaattatatatatatatataaaagatttcattttgagaaacatGTTTTGAGTGAACAtgtctggctaaataattcaaatgaatcattgacatctgctgtcttcattaggcTCAAAACACAGATtccattacaatttaaaatggcatcttggatatccttttctgctggagataccgttgttttaaaaacttaaaaaaaaaaaaaaaaaaaaaaaaaaaactcatatcgTAGGAACAGTACTGCAGAagattttggtggttttaaaaccttgactttttcaaaccgcagtataccttgaaaacggttatcatcccatgcctagtctacaatagtcacattgcaagatatgcaatgtcgaGTCATTATTATAGTTGAGCAGGAGCTACAGACTTGCATAAGACTGAATTACTTTATACAGAATTTatgcataaaaatgtttttgtcatttaaaattagtctcgtttctagtccaaatatcgacATTTCGACAAacagaaaacaagattattttatgtACCGCATTGGCagtcaatttgtttgttttaaggaaaaactcttaattttggcTTATTTCTAAAACAATACTTTTACTTGCTCTACAAATTATTTGGATAGTTGGACTAAAAACGAGACATTTTCACAAGAAACATTTTCGCAATAtcacatttttccaatattgcgcagctctaatatatatgaAGTAGGGCtctacaatatatcatttcagcatcgaaatcACAATGCGTGCGTCCACAATGGGCAtaagccggtataagattctgacagtatgagaaccttggataaaaatctcacgttatgtaaaaaatatgttttatggaattgtgattactgctctaaaatatattatttttaaatgtctggttaaaaaaaacaacaacctttgaacacaaaagatttcATTTTGAGAACATTTTGAGAAACTTttctaatattttggaacagtaaacatgtcaggctgaataattcaaatgaatcattgacttctgctgtcttcattaggttcaaaaacacagattttattacaatttaaaatggcatcctGGATATACATGTATGGACGTATATCGTAGGAACAGTACTGCAGAagattttggcggttttaaaaccttgactttttcaaaccttgtataccttgaaaacggttatcatcccatgcttaGTCTACATGATATGCAATGTCGAGTCAttattatagttgaccaggagctacagaattgcatttaattactttatttatacggaattaatgtacaaaaatgtttttgttatttaaaattagtctcgtttctagtccaaatatcaaaatttcgacaaactgaaaacaagattattttacgtACCGCATTGGAagtcaatttgtttttgttttttgaggaAAACTTTTAAATTTTGACTAatttcttctgaaggtgaaaacaaaaactatatttttacttgctctacaaatcttttgatatttggactacaaagtAAAAAGCAAGAAACATTTTCGCAATATCACAtcacaatattgtgcagccctaatatatatgaaatagggattgcaatgtgtgcatcgaCAACAGTCACATAGCAGAGTCGGGATTATGTATGACCAGAAACCACAGGTCAtaaacacatgagatttgtgaaGTCACTGCAGGATtgaaccataatagagtgaaggTTTATTATCTGCATGTGTTGTTAGAGCCTGTGCCTATATGagcattttaatgttattgaattatttatatgatgaagAAGACTAgcagtgttattttaataattctaattcactactacacttgattttggttttattgtaagaaaacaaaacaaaaaaactataagaaaacatgttaaatgagaatctcaAATACTTGATGGCATACTTcaataaataaagattatttagtattcaaaaatgttttatttgagttatttttggAAATAAATTGGTCTCACGCTTAATATTTTTCAGACTTTTCATAGCAAATGTTttaattccggtacttttaccataaaccgac
>TCONS_00051157
AAAAGCAGAACTGCCGGGGTTCGGCTGAATCCGCGTGTTTGGTCCTAAACGTATGCTTAGATGACAGGTGTTTGTTGTTGTGGTAAAACTAGTGAGTTTGTGAGTCGGAGTTGCTGTGGCTACGAAAGCTCCCAGTTGTGCTGCGCGGAGTTGAACCCCAGTAGGAGCAGCAGCCAGGAGAGGACGACTTTGCCTGACCTCGTTTGCGCTTTGAATATGTTCAAATCCGTCAAGTTTTGCTCTCGAGAACCTCCGAACTCATGGTGAAGAGAAAGAAGACGCCGTCCGCGTCCGAAGAGCTCGAGAATGGGATGACAGTGGGCCAAGGGGGCGGTTCGGGAGTCGAGGGGCCGAGCAAACCGGACCGAAAGCCCGAAGGAGGCGAGGATGGAGAGAGCGCAGATCAGGCGAGCGAGGAGACGAGTACAAAGAGAGTCGGAGAGGAAACACTTAATCCATCCAGCACGGCCAGCCCCGGTTCGGCTCCCACTCCTTCCACACAAACGTCAAGCCCACCCGGACCACAGGTGAACCCGACAGCTCTTTCTCCGGGGCTGGCCGTCCCGAACAACCAGGACCAGCATCATTTTCTCCGCTCCAGTGTGCGACCTCCGAGCAAGCGGATACGGAAAGATGCCTCGTCCCCGGCGCTGAACGGTCACGGCGGTGCGAAAGCGAAAGGTGCAGAAGCAGGTCCCTCTGTGTGCGTGGCAGCCGCTGCAGGTTCAGCTGGAGGCTCTGGGGCAGGTGGGACATCCAGATCGGCCCCAAAGGGCCAGGGCCCTGCAGAGAAGGAGGAAGGGGGGAGTCAGAAACGAGTGCGCAGACAGTGGGAGTCCTGGAGCACGGAGGACAAGAACAGCTTTTTTGAAGGACTTTATGAGCATGGGAAGGACTTCGAAGCTATTCAGAACAACATTGCTCTTAAATATAAGAAGAAGGGAAAGCCTGCAAGTATGGTGAAGAACAAGGAGCAGGTGCGCCATTTCTACTACCGGACTTGGCACAAGATCTCAAAACACATCGATTTCAACAATGTGTATTCACGTGTGCTGAAAAAGTCCTCTCAGGAGCTCTATGGCCTCATCTGTTATGCTGAACTCAGGAAGAAGGTTGGAGGATTGATGGATGACAAAAACGTGGCCAAACTAAATGAGCTTATCCAACAGGGGGCCACCACAGTGCGTTCCAAAGGCAGAAACCTGAGGATCAAAGCTCCCATGTGCCGCGCACTGAAGAAAATCTGCGACCCTGATGGTGTGAGTGATGAGGAGGATCAGAAGCCTGTACGTTTACCCTTGAAAGTGGCCGTGGAACTTCAACCCCGGAGCAATCACTCTTGGGCTCGGGTTCAGAGTCTAGCCCATAATCCTCGGCTCAGgaTGGTCATCGAATTGCACCGGAAGGTCTCCACTCTTATTGAATTCCTGAAGCAAAAGTGGGCCGTCCAAGATCAGCGAATTCGCAAGAGCTTGGCAGAACGAGAAGCTCTTGATGGCCTGGCCCAGTCTAGCGAGTCCGAGGAGCTGTTCTTGTTTCCAGCAGAGAGCAGCACAGTTACTGCTTTGCCTGGTGTTGCTCGAGTCGTGCACTCAAAAGCTTCCTGCACGGTACATTGGCAGGAGAGTGGACGAGGACGGACGGGTATTAGAGACTTGCCTGCCGCTCACATTCTGGGAATTCAGCCTGCTAGAGGAAAATCTGGCAAGCCTGGCCCAGTAGGAGGAGACTCGAAAAGAACCGACGGACATCCCGTTGAAGGTTCTGATAGTAGTAGCACTTCAGCTGCCGGTTTAGAGACCAGTGCAAATCCAAACGTGAACACTACCTCTCCAGTCAGTCCAACCATCACTTCATTGCTGCCCATTGGCCCTGAGGGAAATCCAACCCCAGAGGTGTGTTCAGTTGGTACTTCACCACTCAAGTCAGGTCAAGAGGAGTCATCTGTGACTCCTCCAGGCAGGACTCCAGCTGGGGCCAACCGCAGTCCTAGCTGGGGTCGACAGCAGCATGCAGCACGCTCAAAAATACTTCTGAACAATCCAGGTGGAAGGAACCTGCCGCGCTCATTGCTGGCCTCCGGAGGAGACAGTGAAGGGTTTGCTGTCCCGACGACCCTGCCTCCAAACAGCTCCCGTCAATCACGGATGTTCTCCCCTAATAAGGAGGCAGAGCTCGCTTTTCGCCAACAGCTGGACTCCATCAGTTCAGATATATTTTCGAAGCAGCGGAAAATAGGGAGGGGTCGTCCACTGAGGAAACCTCTGGTGGTTCAGCAGAGAACATTGCTGCCACGAACAGCAGGAGACACCTCGCCTCATGTGTGCTCCTTCTCCATCCTCTCAAATTCATCTGCTACAGGCACTGGATCTTTTCGTCCGATACAAACACGTCTTGCCCCAAACCGCCAACCCTCCTCAAAAGCATCATCCTCTACCGGTAGTCCTGCACCTGTTACTCAGCTCTCCAGTGCAATTGATCTGGCAGCAAAATCTGCAGGCATTATCCCTGGCAGTCCCTGTCGTGAAGTAGAGGCCCCTAGTATAGACAAGGCCATTGTGGAGTCTGAGGACGCCATGGGCTCTGCACCTGCAGCACCTGAGATGGAGCCTGATATACTGGACCAGGAGCCTTCTGAGGAATCCCTGCAGAATGGCGTTTCTCCACCATCACCAGGAGGCGGAGAGTCTCTTTTAGCCCCACCTAGTGTTGCCTCCCTACTGGATATCTCCCTGCCAGGCCCCCCAGAGGAGTCTCTTCCTTCTGGAGAGCCACAAACTCAAATTAGCGACTCCATTATTGAGCTCGCCATCAACTCGCACTATGGAGATGGATCATTGCTCTCACCTCCTAAGCTGAATGGGAGTGATAGATCTAAGCTCCTTCCCTCTTCATGTGACAGCTGGATGCCGTCCCCCACTCACGACCCTCAGTGGTACCCCAATGACTCTACGGATTCAAGCCTGGGCTGTCTGCTCTCAAGTCTGGCATCTCCTGATAAGACGAGAAGGACAGCCCTGCCCCCATCCAGTAGCACAGCCTTACTTGGGCCCAGTTTACTAGACAGCAACTCCCACGATTGTTTTCAGTCCCGCGGCCTGCCGGACGCAGCCGAGGTGGATACCCAGCTGGCCTGTATGATGAGCGAGAGCAGCGTCGACTACATCGCCCGCTTCAATGACCTCGCGCAGGAACTGTCCGTCACAGAGACGACCCTCCCACCTCCTCATGGAGACTGATGCATGAGGTGGAGCCCATCACTGCCTCGCCTCTTTCATATTGGACCGAAGAATGTTAACCAGAGTGCGACAGAGCTGTAGGAAGTGCAATAGACTGGCAGGGTCCACGACAGCCTTTGGgctctaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

symbol description
cramp1 Predicted to enable chromatin binding activity. Predicted to be involved in pattern specification process. Predicted to be active in nucleus. Orthologous to human CRAMP1 (cramped chromatin regulator homolog 1).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003682 chromatin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8255 Predicted to enable chromatin binding activity. Predicted to be involved in pattern specification process. Predicted to be active in nucleus. Orthologous to human CRAMP1 (cramped chromatin regulator homolog 1).

Ensembl:

ensembl_id ENSDARG00000079616

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051156 False 6374 mRNA 0.42 17 15859612 15886658
TCONS_00051157 True 3424 mRNA 0.54 20 15863098 15889508

Neighbor

gene id symbol gene type direction distance location
XLOC_026227 dhrs7b coding downstream 215 15849391 ~ 15859397 (-)
XLOC_026226 mvp coding downstream 125082 15708419 ~ 15734530 (-)
XLOC_026225 NA coding downstream 152845 15685784 ~ 15706767 (-)
XLOC_026224 zgc:66443 coding downstream 180505 15669952 ~ 15679107 (-)
XLOC_026223 zgc:66474 coding downstream 191179 15646192 ~ 15668433 (-)
XLOC_026229 nme3 coding upstream 101039 15990547 ~ 16000168 (-)
XLOC_026230 mrps34 coding upstream 113614 16003122 ~ 16010968 (-)
XLOC_026231 spsb3a coding upstream 128694 16018202 ~ 16039619 (-)
XLOC_026232 atp6v0ca coding upstream 155172 16044680 ~ 16055463 (-)
XLOC_026233 NA coding upstream 175365 16064873 ~ 16068537 (-)
XLOC_026221 NA non-coding downstream 224104 15627269 ~ 15635508 (-)
XLOC_026220 NA non-coding downstream 234092 15618257 ~ 15625520 (-)
XLOC_026205 CR788308.1 non-coding downstream 971444 14888052 ~ 14888168 (-)
XLOC_026204 NA non-coding downstream 984342 14873503 ~ 14875270 (-)
XLOC_026237 NA non-coding upstream 343001 16232509 ~ 16289826 (-)
XLOC_026241 NA non-coding upstream 742602 16632110 ~ 16664028 (-)
XLOC_026245 BX470185.2 non-coding upstream 1010735 16900243 ~ 16903280 (-)
XLOC_026246 NA non-coding upstream 1712978 17602486 ~ 17604149 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000035_00262446_00277494 CRAMP1 coding CI01000035 null 262198 ~ 277494 (-)