XLOC_026229 (nme3)


Basic Information

Item Value
gene id XLOC_026229
gene name nme3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 15990547 ~ 16000168 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051158
CTCTCGTCTCCTCCTCCTTTCTGCCGAAAACTCTTGAGGATTCCTGCACGGAGAAGATGATCATACTTTGCTTAACCATATTTGCGAACATCTTCAAGCCAGGATGGACTGGTGCAAATGAGCGCACGTTCCTGGCAGTGAAGCCGGATGGAGTTCAGCGCAGACTGGTGGGTGAAATCATCCGCCGATTCGAACGCAAAGGTTTTAAACTGGTCGGCATGAAGCTCCTGCAGGCATCAGAGGCGCAGCTCAGACAGCATTACTGGGAGCTGAGAGAGAAACCTTTCTACAACGGCTTGGTCAAATACATGAGCTCTGGACCCATTGTTGCAATGgTTTGGCAGGGGCTGGATGTGGTGAAGACGGCCAGAAAAATGCTTGGAGAGACAAACCCAGCAGACTCCCTGCCAGGCACTATCAGAGGAGACTACTGTGTGGAAGTGGGCAGGAATGTGATTCACGGCAGTGACTCTGTTGAAAGTGCTGCTCGGGAAATCTCCCTGTGGTTCGAGGATCATGAGCTGTTCTGCTATGAAGAGTGCGGTCAGCACTGGATCTACGCTTGAAATCATTCATCAAACACTCTTGCGTTCATCATCAATCACACACAGCTTTATCTGATAGCTGCTTATCAAAGTCAGCTCTGCACGAGCTATTAAGTGACCAAAATATAAAAACGCTGGCTTATGTTGACAAGGTAATTGATCTGAAATCCAATTATTGGTCAAGCTTGAATGTGCGGCTTACTTGCTGCTTTTGTAAACGTGTATTTAGGCTTAGTTTGCATTTTCAGAAAGTTGGTCAATCCTGCACTAAAGTGTTTACATCCATCTGAAagacactgtttacatttttaaatccaaCTTTTGATATAGACATGTTTGTCATCTTGATgcactatgaaaaaaaaaacgacattTCCAAATCAAGACTTCTTAATCAGGACTCATGAAAGCAATAATGAATGAAGGGCCAGCATGCTCTGATAACTGACTTGAACATCACATAATGCTTTGTTTCAGTGCTTGGAACTCACCTGACCAAAGGGCCGCCttactttaataaattattactCTCACTTTGA
>TCONS_00051159
gcacacacacacacacacacgtttataaTGGACTCCAAAAGGTCATTATCTGATGCAGAAGAGCTCGCGGATTTAGCCACAAAACACGCGAGGATTATTGAGTCAGGATGGACTGGTGCAAATGAGCGCACGTTCCTGGCAGTGAAGCCGGATGGAGTTCAGCGCAGACTGGTGGGTGAAATCATCCGCCGATTCGAACGCAAAGGTTTTAAACTGGTCGGCATGAAGCTCCTGCAGGCATCAGAGGCGCAGCTCAGACAGCATTACTGGGAGCTGAGAGAGAAACCTTTCTACAACGGCTTGGTCAAATACATGAGCTCTGGACCCATTGTTGCAATGgTTTGGCAGGGGCTGGATGTGGTGAAGACGGCCAGAAAAATGCTTGGAGAGACAAACCCAGCAGACTCCCTGCCAGGCACTATCAGAGGAGACTACTGTGTGGAAGTGGGCAGGAATGTGATTCACGGCAGTGACTCTGTTGAAAGTGCTGCTCGGGAAATCTCCCTGTGGTTCGAGGATCATGAGCTGTTCTGCTATGAAGAGTGCGGTCAGCACTGGATCTACGCTTGAAATCATTCATCAAACACTCTTGCGTTCATCATCAATCACACACAGCTTTATCTGATAGCTGCTTATCAAAGTCAGCTCTGCACGAGCTATTAAGTGACCAAAATATAAAAACGCTGGCTTATGTTGACAAGGTAATTGATCTGAAATCCAATTATTGGTCAAGCTTGAATGTGCGGCTTACTTGCTGCTTTTGTAAACGTGTATTTAGGCTTAGTTTGCATTTTCAGAAAGTTGGTCAATCCTGCACTAAAGTGTTTACATCCATCTGAAagacact

Function

symbol description
nme3 Predicted to enable nucleoside diphosphate kinase activity. Acts upstream of or within positive regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway. Is expressed in several structures, including brain; digestive system; male organism; pleuroperitoneal region; and tail bud. Orthologous to human NME3 (NME/NM23 nucleoside diphosphate kinase 3).

GO:

id name namespace
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0006183 GTP biosynthetic process biological_process
GO:0106071 positive regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0006228 UTP biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000210-34 Predicted to enable nucleoside diphosphate kinase activity. Acts upstream of or within positive regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway. Is expressed in several structures, including brain; digestive system; male organism; pleuroperitoneal region; and tail bud. Orthologous to human NME3 (NME/NM23 nucleoside diphosphate kinase 3).

Ensembl:

ensembl_id ENSDARG00000100990

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051158 False 1084 mRNA 0.44 5 15990547 16000168
TCONS_00051159 True 847 mRNA 0.47 5 15990788 15999501

Neighbor

gene id symbol gene type direction distance location
XLOC_026228 cramp1 coding downstream 101039 15859612 ~ 15889508 (-)
XLOC_026227 dhrs7b coding downstream 131150 15849391 ~ 15859397 (-)
XLOC_026226 mvp coding downstream 256017 15708419 ~ 15734530 (-)
XLOC_026225 NA coding downstream 283780 15685784 ~ 15706767 (-)
XLOC_026224 zgc:66443 coding downstream 311440 15669952 ~ 15679107 (-)
XLOC_026230 mrps34 coding upstream 2954 16003122 ~ 16010968 (-)
XLOC_026231 spsb3a coding upstream 18034 16018202 ~ 16039619 (-)
XLOC_026232 atp6v0ca coding upstream 44512 16044680 ~ 16055463 (-)
XLOC_026233 NA coding upstream 64705 16064873 ~ 16068537 (-)
XLOC_026234 lasp1 coding upstream 72798 16072966 ~ 16110351 (-)
XLOC_026221 NA non-coding downstream 355039 15627269 ~ 15635508 (-)
XLOC_026220 NA non-coding downstream 365027 15618257 ~ 15625520 (-)
XLOC_026205 CR788308.1 non-coding downstream 1102379 14888052 ~ 14888168 (-)
XLOC_026204 NA non-coding downstream 1115277 14873503 ~ 14875270 (-)
XLOC_026237 NA non-coding upstream 232341 16232509 ~ 16289826 (-)
XLOC_026241 NA non-coding upstream 631942 16632110 ~ 16664028 (-)
XLOC_026245 BX470185.2 non-coding upstream 900075 16900243 ~ 16903280 (-)
XLOC_026246 NA non-coding upstream 1602318 17602486 ~ 17604149 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000035_00324893_00327404 NME3 coding CI01000035 null 324310 ~ 327404 (-)