XLOC_026231 (spsb3a)


Basic Information

Item Value
gene id XLOC_026231
gene name spsb3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 16018202 ~ 16039619 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051161
GCGGGACTTACTAAAGCATTGTTTACGTCTGTCGTGAAAGTAGGTCACAGGAAAGTGTGACAGTTAGCTGGTGGACAGAATCCGATTGCTTTTTGCAGATCCACACATTATTACAGTGCCACAATACAACCTGTAGGTGTACGAGGCTTTAACGGTCGCGGTGGTATCCCTGAAAGACGGGTGCGGAGGCTCCAGGTTGGCATGTCAAGGCGGAGCAGAAACAGCAGGGCGTGGAGGTACGTGTGGAGTGGAATAAGACGGGATGCAGATGCAAGAGCGCTGGTGCTTGCCTCCGAGAGTGACGAGTGGAGCTACGATCGACAGCAGTACAGTGACTCTGATTCTGAAGCCGAGTATCCTGCCATTGTTCCGGCGGTCCCCAGTGCGGTGCCGGTGACTGGAGAGTCCTACTGCAGCTGTGATTCACAGATGGAGCTCAGCTGTAACCCGCGCCTCAGAGGTTACACACACTTACGGGACTGCCACTGTGGAGAAGATGACCAAGATTTTGACTGGGTGTGGGACGAGGGCAGCCGGTCGTCTGCGACGCTGCTGAGCTGTGAGAACAGGAAAGTGAGCTTCCACTCAGAATACAGCTGTGGGACGGCGGCCATCCGTGGCTCCAGAGAGCTCTCAGAGGGACAACACTTCTGGGAGATTAAAATGACTTCTCCTGTCTACGGCACAGACATGATGGTTGGCATTGGCACCTCAGATGTGAATCTGGACAAATACAGACACACGTTCTGCAGTCTGCTGGGTAAAGATGAAGACAGCTGGGGTTTGTCTTACACAGGTCTGTTACATCATAACGGTGACAAAGTGAGCTTTTCGTCACGTTTCGGACAGGGCTCCATTATCGGGGTTCACCTGGACACGTGGCATGGCACCCTCACGTTCTACAAAAACCGCAAGTGCATTGgtgtaGCAGCCACAGAGATGAAGAACAAGCATGTGTTTCCGATGGCCTGCTCCACCGCGGCCAAGAGCAGCATGAAGGTGATTCGCTCTGTCTCCGCTCCCACGTCCCTCCAGTACCTGTGCTGCTCTCGGCTCCGCAAGCTGCTGCCGTCCGGCGTGGATGCGCTGCGCGTCCTGCCGCTGCCGCCAGGCCTCAGACACCTGCTCCACTCCAAACTGGGCTGGGTGCTGAGTCTggatcacacacactcacactccagCCCGCACACCCCACCGGGACCCTCGTCAGGCAGTGACTCCGAGGGATGCTCCTCGGACCCGGAGGCCTGCCAGCGCAAACGCTGCCGCTGGACCTGAGGCTCGGCTCATGACGCACACTTCCCAAAAAACAGAGACACTCCACATGTAGAAACACTGGACGTGTGCTGTCAAGTCACATCAGTGGAGAACGGGAGCCTCCAGGTCAGTCCAGCCTGTTTTACTAGACGCATCGCTGGTAAATACTCATCATTCAAAGCTCTAAAGGTAGTTCGCAATATCAGGAAACCATTGGGATATATGTATATCGCAGTATTCATAGTCAGTTTTTATACTGTCAGATGAAAGAGAGAAAATGAGCCTGTTTTAAAACGAGGCATCTGAAACACACATGCTGTGTGGATTCAGAAATCAAAAATGCTAATACGTGACGCTTTACTGAGGGGAAGAAAGACACAAGTTGAGCTGATCTCCTGTGaccttttgttttgggttttctTAATGACATATTCACGTGTCATTTACGCTTCATCAAACATCTCAGCACTTCAAATCATTTCCAGTGTAAGTTTCCAACAATCACTGTATgttttttactctttattttattccgacagacagacagtaagCGAGTGATGTTGTCtacataaatgtgttttaaacaccATTATGGGCAAATGATGAGGAAAACACTTTGTCTTGACAGTCGTTGTCTGTAAGGATCCCTTTGGGCAATGGGTGATgctcaaagtgtgtgtgtgtgtgtgtgtgcgtacttgtttatgtggtttatgaggacagggaattgtataatgacatgggtatgacttaAGCCCAGGTCAGATCACACGAATTTGTCATGATTTCAGCACTGTTTCCTTGAAACAGGGTGTCTTGGTGAGTCGTAAACGACAAATGGATGTTGTGACACAAGatttaatcgttttttttttctcgtgtAATTATGTGGCGACGTGTGGATGAAATTTCTCTGTTTTATCAGCGGGTGCTGAGGTTTATGCGCCGGTCAGGTAATTaaaaaataggctgcatatttacttatgggtgggtcaCAGGTGGATAAGATCAGTCAtaggcagggccagacggaatctgtggacgttttttgctatttctgcggagaattttggtaaaaatctgcggatttctgcagaattattttgggagtatccagcggagtatcataactaaaatcttaatatattaaataaaaagtaataaattactgaataaaaactgaataaattcagatttacacatttactcaagcaaataaacagaattaataatgggctaaaaatctgcagaaaatctccggaaaatctgcggaattctgcacgcgcagattccgtgtgggcctagtcatgggTTAACCAAACTTTAACTACCTTGTCTAAAATATGAATGCTTCTCTAAAACTGtgaatatttaacttttaattgtatttaacaaAGCAAcaaaatctcacggcaattcgtattCTGGCACATATTTCAGACTTGTTTTAAAGAGcatcacctcaaatgttattcattattcttgtttaaagataactgaccaacaaaagatgcattaaaattaagatacaaatgaAAGCAAACGAAATCCACTACTCCACTGTgcgggtggatgatttgtttcgctctgtggaaaataaggatttaatgaatgcttcactGTAATTGTATCACAATCCTCTGTCATGTATTTGTTAattttgtataatgtcattattttgAAGAtcatgtcttgagcatctgatttttccttgctACTGCCAGTGTGCTTCATTTTCTCCGTCTCACTCGCGGCAAGTTCAGGCGAAGTGTTTAATAAGAAACCCATGGCAGGAAAATATACATGTAGATTTTAAGAAAtgatcttaatattaaaaatgaatcataagtagggccagacgaaatctgcggacgttttttgctatttctgctgagaattttggttaaggtctgcggatttctgcaaattattttgagagtatcataactaaaaccttaatatatgaaataaaaaataatatcttttaaacttctatttaatgtttaaaatgcaaatccaattagattcacttcatttggtaaataaagcaagtttgtcatataatatgtcTAGTAAAAAATCACTGTACAAACAGCATTGCTCATAAATCAGATgaatattttcacattagtcaataatattactgaaattaattaaaaaactgaaaaatatagatttacacacatttactcaagtaaataaacagaattaatgatgggctaaaaatctgcagaaaatctgaggaattctgcgcgcgcagatttcgGGTGGGCCTAATCATAAGTTTAATCCTACCCATGTGGtaacgaatgcccttaaataatatatttattagttgtcagcaaaaaatctatatttattgagattgaaataagatCTGGAAaccattgaaaaaaataaaatttagataataaatataaaaaagggggctgaatatgtttttgtttgttctttttataaagatttttaaaaatccactTGCTCTTATTATTACACTGGATTTAAAGTACACTTTTCATCAAaattaaccaacacaatctcacaccAAGTcgttacttttttatttagtgactaattcgtatgaattcgtcaGATCTCATTCGCACAATTTAGTGCAATTAGCTCATCCACCAATGACGGTTAGGcttgggtgccacgccttcttttaaaaactgtacattttcgtacaactgaactagcacgaattcatataaataaatctgCCTTTCTGCTGCACACGACAAGCTACAGCCTctaagtcattcatttccaatggagagtagtccgggagctgagtggagttccgatcatctccctatgcggaaaattcggatccgttGAAATACAAATGCCATCAAATAATGTAGTTATTAGTTGTCAGCAAGCATCAATATTTATTGAGGttgaaataagataaaaaaatgtaattgagaTAAGAAATATGGTTATAGCAACACTTGGGAAATAACGCTCGTCGTAGACGTCACGGTATGACTGATCGTGAAGgaacgtgtagtctggcacatttgttactcacaacaagtcaagattttatcaagaaaaaaaaatcacataatctgacatagtgactttcgtAACCGTCAATAAACATCATGTGATCTGACCGGAGCTTTAGTTTTACTATATTacggtggtttatgaggacatgccttgtcctcctaattcaaaatgcttaaaaagcCCACTTAACAGGGTGTTTTCACATTCAAAATTTGGTAGAGGCCATATAAGAAGCAGTTTTAGTATGAAATACATTACGCCTATAGAGAGTCCTCATTAACCATATATACAAGTGTGTGTATTGTATGTGTATTTCCAGAGACTTTTCTGTTTCCCTGAAAATACCTTGATGCAGTTTTGTCAAACTGACTGATGCGAACTGGAGGTGGATTCAGTTTTCAATCTGTGCAACACCATCTATCTCTCTACATGAGGTTCATATTGAATTCATATGGGGTTTATATTGCAGGTTTTGTAATtcgttgttttaaaaaacaaaaaagaagagcAAATCATCTTTTTGTTATGCATTAAGCACTTTCTGCGCTTATTATATGTATAGAAATGTATACAGGTCCTATACTGTGTTTTACGCGTGTTGTATGTCATAAgcgctatctctctctctctctctctctctctctctcttttgtctgTCTTCTCTCGCTTCTTCAACAACTTACATTAAGCATGGCCTTTTATACGAGTCAAAAttatatatgcattttaaaaaaggggctgaatatgtttttgtttgttctttttgaGATCTTAATAAAGGTTTTCAAAAATC

Function

symbol description
spsb3a Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in membrane. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human SPSB3 (splA/ryanodine receptor domain and SOCS box containing 3).

GO:

id name namespace
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4182 Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in membrane. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human SPSB3 (splA/ryanodine receptor domain and SOCS box containing 3).

Ensembl:

ensembl_id ENSDARG00000077737

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051161 True 5071 mRNA 0.41 7 16018202 16039619

Neighbor

gene id symbol gene type direction distance location
XLOC_026230 mrps34 coding downstream 7234 16003122 ~ 16010968 (-)
XLOC_026229 nme3 coding downstream 18034 15990547 ~ 16000168 (-)
XLOC_026228 cramp1 coding downstream 128694 15859612 ~ 15889508 (-)
XLOC_026227 dhrs7b coding downstream 158805 15849391 ~ 15859397 (-)
XLOC_026226 mvp coding downstream 283672 15708419 ~ 15734530 (-)
XLOC_026232 atp6v0ca coding upstream 5061 16044680 ~ 16055463 (-)
XLOC_026233 NA coding upstream 25254 16064873 ~ 16068537 (-)
XLOC_026234 lasp1 coding upstream 33347 16072966 ~ 16110351 (-)
XLOC_026235 arl5c coding upstream 94757 16134376 ~ 16142057 (-)
XLOC_026236 cacnb1 coding upstream 117501 16157120 ~ 16227683 (-)
XLOC_026225 NA non-coding downstream 311435 15685784 ~ 15706767 (-)
XLOC_026221 NA non-coding downstream 382694 15627269 ~ 15635508 (-)
XLOC_026220 NA non-coding downstream 392682 15618257 ~ 15625520 (-)
XLOC_026205 CR788308.1 non-coding downstream 1130034 14888052 ~ 14888168 (-)
XLOC_026204 NA non-coding downstream 1142932 14873503 ~ 14875270 (-)
XLOC_026237 NA non-coding upstream 192890 16232509 ~ 16289826 (-)
XLOC_026241 NA non-coding upstream 592491 16632110 ~ 16664028 (-)
XLOC_026245 BX470185.2 non-coding upstream 860624 16900243 ~ 16903280 (-)
XLOC_026246 NA non-coding upstream 1562867 17602486 ~ 17604149 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000035_00333437_00337528 SPSB3, SPSB3A coding CI01000035 null 333437 ~ 337528 (-)