XLOC_026232 (atp6v0ca)


Basic Information

Item Value
gene id XLOC_026232
gene name atp6v0ca
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 16044680 ~ 16055463 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051162
AGAAGCGGAAATGGACCCTGCACTCATGTCTTGATCATGTGACTCTCTTCATTTCGCCATTTTCTTCCTCTCCGCCGGCGACCAGCCTCCTGTCGGTTTTAGTCTCCCGAACGCGCGAGAAGAATGGACACCCAGAACCCCCAGTACTCTCCCTTCTTCGCAGTGATGGGTGCCTCCTCAGCGATGGTGTTCAGCGCGTTGGGTGCTGCATACGGGACTGCTAAGAGCGGCACAGGCATTGCTGCCATGTCAGTGATGCGGCCAGAGCTGATCATGAAGTCCATCATTCCCGTGGTCATGGCGGGTATCATTGCCATCTACGGCCTGGTGGTGGCTGTACTTATTGCCAACAATATCGGTGATAAAATCTCGCTCTACAAgagttTCCTGCATCTGGGAGCGGGTCTGAGTGTGGGTCTGAGCGGTCTCGCTGCCGGCTTCGCCATCGGGATCGTGGGAGACGCAGGTGTGAGAGGAACGGCCCAGCAGCCGCGTCTGTTCGTGGGCATGATCCTCATCTTGATCTTTGCAGAGGTGCTGGGGCTCTACGGCCTGATCGTCGCCCTCATCCTGTCCACTAAGGGTTAATCGTTGCTCCTATCCTCTCTTacacatgaacaaacacacacacagacacacacaccaacacaaatGATATACAACGAGTAAACTTCACCGCCTGAATAACGACGAGAGGAATTTTTGCGTGCATGCGTGTATCGTGAGTGTGCTGTTTGCGATGAGTGAGCGTGAGATTGATCTTCCTCTCTGTGTAAAGTAGcccgatgtgtgtgtgtttttctttcccCCCTGTAAATGCGCTGTGTAGCTATCGCTCTcgtcccgtgtgtgtgtgtgtgtgcgtgcgtgtgtttaaATATAGACGCCCTCTTTCTCATACGCTACACTTTTTGTTTGTCATCCTCttttatttagttataattttacTCTCCTTTAAAGAACAAATCAACTGTTTTTGTTTAGTTCGTTTCTCACTTTTGGGACCATTCATTCCAATTATTAAAACACTGATGTTGAGgacctaaatgtaaaaaaaaaaagatggattattgctgtttgtttgttttgttttctgttccTGATGATTATTTATGAAGATTTTGAGATGTTCATTAAACAGTTTAAGTGGATCAAAGTCTTTATCGAGAATCCTGACTATATATAAATGGTGTGAGCGTGtatcagaaaatatatatatgaatatatctGTATAGGTGAGTTGCACTGTGGAAAATTTGTCAGTTCTTCGGGTATGTAATCACTGATTGCCATTGAGAGAGTTGTCTTAATCAAGATATAGATGTGCAAGTTTAGTACCTGTGTGTGTGAAACGAATGAATgcacatgtgtgtttgtgagagcgcatgtgtgcgtgtgtgtttaaaCGTGACATTTCTTCTTACATGTAGCGTTTTACCTGTAGTtgatactgtttctgggtccgtTCATGGGTGAACACCAGCGCAGCTTGTCCAGTTTCCGAATAAAACTTCCTCAACCt
>TCONS_00051163
TGATCATGTGACTCTCTTCATTTCGCCATTTTCTTCCTCTCCGCCGGCGACCAGCCTCCTGTCGGGTTCGTGACCGTCTCTCCTGCTCCTGCAAGACCTGTCAGCCAAAAGAAGACCTCACTCAGAGTCTAAACCTGCTAGACTGAAGCTTTCCTCCCTTTTCTGCCTTTAGTTTTAGTCTCCCGAACGCGCGAGAAGAATGGACACCCAGAACCCCCAGTACTCTCCCTTCTTCGCAGTGATGGGTGCCTCCTCAGCGATGGTGTTCAGCGCGTTGGGTGCTGCATACGGGACTGCTAAGAGCGGCACAGGCATTGCTGCCATGTCAGTGATGCGGCCAGAGCTGATCATGAAGTCCATCATTCCCGTGGTCATGGCGGGTATCATTGCCATCTACGGCCTGGTGGTGGCTGTACTTATTGCCAACAATATCGGTGATAAAATCTCGCTCTACAAgagttTCCTGCATCTGGGAGCGGGTCTGAGTGTGGGTCTGAGCGGTCTCGCTGCCGGCTTCGCCATCGGGATCGTGGGAGACGCAGGTGTGAGAGGAACGGCCCAGCAGCCGCGTCTGTTCGTGGGCATGATCCTCATCTTGATCTTTGCAGAGGTGCTGGGGCTCTACGGCCTGATCGTCGCCCTCATCCTGTCCACTAAGGGTTAATCGTTGCTCCTATCCTCTCTTacacatgaacaaacacacacacagacacacacaccaacacaaatGATATACAACGAGTAAACTTCACCGCCTGAATAACGACGAGAGGAATTTTTGCGTGCATGCGTGTATCGTGAGTGTGCTGTTTGCGATGAGTGAGCGTGAGATTGATCTTCCTCTCTGTGTAAAGTAGcccgatgtgtgtgtgtttttctttcccCCCTGTAAATGCGCTGTGTAGCTATCGCTCTcgtcccgtgtgtgtgtgtgtgtgcgtgcgtgtgtttaaATATAGACGCCCTCTTTCTCATACGCTACACTTTTTGTTTGTCATCCTCttttatttagttataattttacTCTCCTTTAAAGAACAAATCAACTGTTTTTGTTTAGTTCGTTTCTCACTTTTGGGACCATTCATTCCAATTATTAAAACACTGATGTTGAGgacctaaatgtaaaaaaaaaaagatggattattgctgtttgtttgttttgttttctgttccTGATGATTATTTATGAAGATTTTGAGATGTTCATTAAACAGTTTAAGTGGATCAAAGTCTT

Function

symbol description
atp6v0ca Predicted to enable proton transmembrane transporter activity. Acts upstream of or within embryonic retina morphogenesis in camera-type eye; notochord cell vacuolation; and response to yeast. Predicted to be located in vacuolar membrane. Predicted to be part of proton-transporting V-type ATPase, V0 domain. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; gonad; integument; nervous system; and unfertilized egg. Human ortholog(s) of this gene implicated in thyroid gland carcinoma. Orthologous to human ATP6V0C (ATPase H+ transporting V0 subunit c).

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0001878 response to yeast biological_process
GO:0006811 ion transport biological_process
GO:0060036 notochord cell vacuolation biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0005773 vacuole cellular_component
GO:0005774 vacuolar membrane cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0033179 proton-transporting V-type ATPase, V0 domain cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020419-23 Predicted to enable proton transmembrane transporter activity. Acts upstream of or within embryonic retina morphogenesis in camera-type eye; notochord cell vacuolation; and response to yeast. Predicted to be located in vacuolar membrane. Predicted to be part of proton-transporting V-type ATPase, V0 domain. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; gonad; integument; nervous system; and unfertilized egg. Human ortholog(s) of this gene implicated in thyroid gland carcinoma. Orthologous to human ATP6V0C (ATPase H+ transporting V0 subunit c).

Ensembl:

ensembl_id ENSDARG00000057853

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051162 False 1522 mRNA 0.46 4 16044680 16055463
TCONS_00051163 True 1237 mRNA 0.48 3 16045041 16055432

Neighbor

gene id symbol gene type direction distance location
XLOC_026231 spsb3a coding downstream 5061 16018202 ~ 16039619 (-)
XLOC_026230 mrps34 coding downstream 33712 16003122 ~ 16010968 (-)
XLOC_026229 nme3 coding downstream 44512 15990547 ~ 16000168 (-)
XLOC_026228 cramp1 coding downstream 155172 15859612 ~ 15889508 (-)
XLOC_026227 dhrs7b coding downstream 185283 15849391 ~ 15859397 (-)
XLOC_026233 NA coding upstream 9410 16064873 ~ 16068537 (-)
XLOC_026234 lasp1 coding upstream 17503 16072966 ~ 16110351 (-)
XLOC_026235 arl5c coding upstream 78913 16134376 ~ 16142057 (-)
XLOC_026236 cacnb1 coding upstream 101657 16157120 ~ 16227683 (-)
XLOC_026237 NA coding upstream 177046 16232509 ~ 16289826 (-)
XLOC_026225 NA non-coding downstream 337913 15685784 ~ 15706767 (-)
XLOC_026221 NA non-coding downstream 409172 15627269 ~ 15635508 (-)
XLOC_026220 NA non-coding downstream 419160 15618257 ~ 15625520 (-)
XLOC_026205 CR788308.1 non-coding downstream 1156512 14888052 ~ 14888168 (-)
XLOC_026204 NA non-coding downstream 1169410 14873503 ~ 14875270 (-)
XLOC_026241 NA non-coding upstream 576647 16632110 ~ 16664028 (-)
XLOC_026245 BX470185.2 non-coding upstream 844780 16900243 ~ 16903280 (-)
XLOC_026246 NA non-coding upstream 1547023 17602486 ~ 17604149 (-)

Expression


Co-expression Network